RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 MT-ATP8P03928 68 aa5.93□□□□□ -1.46
VPS28-216ENST00000533806 A8MUN3 132 aa5.92□□□□□ -1.46
VPS28-216ENST00000533806 H3BPC8 53 aa5.92□□□□□ -1.46
VPS28-216ENST00000533806 KRTAP19-6Q3LI70 58 aa5.91□□□□□ -1.46
VPS28-216ENST00000533806 SCGB1A1P11684 91 aa5.9□□□□□ -1.46
VPS28-216ENST00000533806 FAM236AA0A1B0GUQ0 79 aa5.87□□□□□ -1.47
VPS28-216ENST00000533806 FAM236BA0A1B0GV22 79 aa5.87□□□□□ -1.47
VPS28-216ENST00000533806 SPRR2GQ9BYE4 73 aa5.87□□□□□ -1.47
VPS28-216ENST00000533806 NDUFC1O43677 76 aa5.85□□□□□ -1.47
VPS28-216ENST00000533806 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.84□□□□□ -1.47
VPS28-216ENST00000533806 H0YAA0 97 aa5.84□□□□□ -1.47
VPS28-216ENST00000533806 KRTAP19-8Q3LI54 63 aa5.82□□□□□ -1.48
VPS28-216ENST00000533806 TRAV7A0A075B6U4 112 aa5.81□□□□□ -1.48
VPS28-216ENST00000533806 MT1BP07438 61 aa5.81□□□□□ -1.48
VPS28-216ENST00000533806 SMIM20Q8N5G0 67 aa5.81□□□□□ -1.48
VPS28-216ENST00000533806 DMAC1Q96GE9 116 aa5.81□□□□□ -1.48
VPS28-216ENST00000533806 MACF1Q9UPN3 7388 aaKnown RBP5.79□□□□□ -1.48
VPS28-216ENST00000533806 CRIPTQ9P021 101 aa5.78□□□□□ -1.48
VPS28-216ENST00000533806 Q5VV11 94 aa5.74□□□□□ -1.49
VPS28-216ENST00000533806 SYNE2Q8WXH0 6885 aaKnown RBP5.71□□□□□ -1.5
VPS28-216ENST00000533806 KRTAP9-7A8MTY7 169 aa5.71□□□□□ -1.5
VPS28-216ENST00000533806 ADM2Q7Z4H4 148 aa5.71□□□□□ -1.5
VPS28-216ENST00000533806 SERP2Q8N6R1 65 aa5.67□□□□□ -1.5
VPS28-216ENST00000533806 ACYP2P14621 99 aa5.66□□□□□ -1.5
VPS28-216ENST00000533806 KRTAP3-2Q9BYR7 98 aa5.66□□□□□ -1.5
VPS28-216ENST00000533806 SNURFQ9Y675 71 aa5.66□□□□□ -1.5
VPS28-216ENST00000533806 P0C880 135 aa5.64□□□□□ -1.51
VPS28-216ENST00000533806 KRTAP10-5P60370 271 aa5.63□□□□□ -1.51
VPS28-216ENST00000533806 C20orf197Q8N268 126 aa5.62□□□□□ -1.51
VPS28-216ENST00000533806 A6NN06 94 aa5.61□□□□□ -1.51
VPS28-216ENST00000533806 SPANXA2-OT1Q8N9U9 137 aa5.61□□□□□ -1.51
VPS28-216ENST00000533806 PCP4P48539 62 aa5.6□□□□□ -1.51
VPS28-216ENST00000533806 R4GN34 69 aa5.55□□□□□ -1.52
VPS28-216ENST00000533806 SPTSSBQ8NFR3 76 aa5.53□□□□□ -1.52
VPS28-216ENST00000533806 COX7CP15954 63 aa5.52□□□□□ -1.53
VPS28-216ENST00000533806 KRTAP6-3Q3LI67 103 aa5.52□□□□□ -1.53
VPS28-216ENST00000533806 M0QZ58 72 aa5.51□□□□□ -1.53
VPS28-216ENST00000533806 CHKB-CPT1BH3BT56 60 aa5.5□□□□□ -1.53
VPS28-216ENST00000533806 ANAPC13Q9BS18 74 aa5.49□□□□□ -1.53
VPS28-216ENST00000533806 MT1XP80297 61 aa5.47□□□□□ -1.53
VPS28-216ENST00000533806 PLAC4Q8WY50 150 aa5.45□□□□□ -1.54
VPS28-216ENST00000533806 CYSTM1Q9H1C7 97 aa5.45□□□□□ -1.54
VPS28-216ENST00000533806 H7BZZ5 65 aa5.44□□□□□ -1.54
VPS28-216ENST00000533806 COA5Q86WW8 74 aa5.41□□□□□ -1.54
VPS28-216ENST00000533806 PRO2289Q9P1D8 64 aa5.4□□□□□ -1.54
VPS28-216ENST00000533806 CCDC179H3BU77 68 aa5.39□□□□□ -1.55
VPS28-216ENST00000533806 LINC01554Q52M75 96 aa5.39□□□□□ -1.55
VPS28-216ENST00000533806 MUC12Q9UKN1 5478 aa5.37□□□□□ -1.55
VPS28-216ENST00000533806 NEBP20929 6669 aa5.36□□□□□ -1.55
VPS28-216ENST00000533806 KRTAP5-9P26371 169 aa5.35□□□□□ -1.55
VPS28-216ENST00000533806 KMT2DO14686 5537 aa5.35□□□□□ -1.55
VPS28-216ENST00000533806 KRTAP13-4Q3LI77 160 aa5.34□□□□□ -1.55
VPS28-216ENST00000533806 KRTAP12-2P59991 146 aa5.31□□□□□ -1.56
VPS28-216ENST00000533806 MDN1Q9NU22 5596 aa5.29□□□□□ -1.56
VPS28-216ENST00000533806 SEC61GP60059 68 aa5.22□□□□□ -1.57
VPS28-216ENST00000533806 KRTAP10-7P60409 375 aaPredicted RBP5.21□□□□□ -1.58
VPS28-216ENST00000533806 SERP1Q9Y6X1 66 aa5.21□□□□□ -1.58
VPS28-216ENST00000533806 KRTAP10-12P60413 245 aa5.2□□□□□ -1.58
VPS28-216ENST00000533806 KRTAP4-8A0A0G2JLE6 195 aa5.18□□□□□ -1.58
VPS28-216ENST00000533806 A0A1B0GU33 70 aa5.18□□□□□ -1.58
VPS28-216ENST00000533806 KRTAP4-8Q9BYQ9 185 aa5.18□□□□□ -1.58
VPS28-216ENST00000533806 KRTAP8-1Q8IUC2 63 aa5.17□□□□□ -1.58
VPS28-216ENST00000533806 SPATA8Q6RVD6 105 aa5.16□□□□□ -1.58
VPS28-216ENST00000533806 ATP5EP56381 51 aaPredicted RBP5.15□□□□□ -1.59
VPS28-216ENST00000533806 TMEM258P61165 79 aa5.14□□□□□ -1.59
VPS28-216ENST00000533806 SPRR2FQ96RM1 72 aa5.14□□□□□ -1.59
VPS28-216ENST00000533806 A0A0D9SG42 100 aa5.11□□□□□ -1.59
VPS28-216ENST00000533806 A0A1B0GU69 56 aa5.11□□□□□ -1.59
VPS28-216ENST00000533806 CAMK2N1Q7Z7J9 78 aa5.09□□□□□ -1.59
VPS28-216ENST00000533806 KRTAP12-1P59990 96 aa5.08□□□□□ -1.6
VPS28-216ENST00000533806 LCE1AQ5T7P2 110 aa5.04□□□□□ -1.6
VPS28-216ENST00000533806 SPRR2EP22531 72 aa5.03□□□□□ -1.6
VPS28-216ENST00000533806 SPRR2BP35325 72 aa5.03□□□□□ -1.6
VPS28-216ENST00000533806 SPRR2AP35326 72 aa5.03□□□□□ -1.6
VPS28-216ENST00000533806 LINC01558Q9Y6Z2 57 aa5.03□□□□□ -1.6
VPS28-216ENST00000533806 SPINT4Q6UDR6 99 aa5.02□□□□□ -1.61
VPS28-216ENST00000533806 RPS28P62857 69 aaKnown RBP5.01□□□□□ -1.61
VPS28-216ENST00000533806 SMIM26A0A096LP01 95 aa5□□□□□ -1.61
VPS28-216ENST00000533806 KRTAP20-1Q3LI63 56 aa5□□□□□ -1.61
VPS28-216ENST00000533806 A8MU10 97 aa4.99□□□□□ -1.61
VPS28-216ENST00000533806 PRR15LQ9BU68 103 aa4.97□□□□□ -1.61
VPS28-216ENST00000533806 KRTAP2-3P0C7H8 128 aa4.94□□□□□ -1.62
VPS28-216ENST00000533806 KRTAP2-4Q9BYR9 128 aa4.94□□□□□ -1.62
VPS28-216ENST00000533806 KRTAP19-7Q3SYF9 63 aa4.9□□□□□ -1.63
VPS28-216ENST00000533806 SPRR2DP22532 72 aa4.86□□□□□ -1.63
VPS28-216ENST00000533806 UQCR11O14957 56 aa4.85□□□□□ -1.63
VPS28-216ENST00000533806 C10orf95Q9H7T3 257 aa4.85□□□□□ -1.63
VPS28-216ENST00000533806 MT1EP04732 61 aa4.83□□□□□ -1.64
VPS28-216ENST00000533806 Q1T7F1 81 aa4.78□□□□□ -1.64
VPS28-216ENST00000533806 LCE5AQ5TCM9 118 aa4.78□□□□□ -1.64
VPS28-216ENST00000533806 KRTAP2-2Q9BYT5 123 aa4.78□□□□□ -1.64
VPS28-216ENST00000533806 KRTAP2-1Q9BYU5 128 aa4.78□□□□□ -1.64
VPS28-216ENST00000533806 KRTAP19-5Q3LI72 72 aa4.77□□□□□ -1.65
VPS28-216ENST00000533806 TNP1P09430 55 aa4.75□□□□□ -1.65
VPS28-216ENST00000533806 KRTAP19-3Q7Z4W3 81 aa4.75□□□□□ -1.65
VPS28-216ENST00000533806 V9GYY9 64 aa4.75□□□□□ -1.65
VPS28-216ENST00000533806 MIR22HGQ0VDD5 57 aa4.74□□□□□ -1.65
VPS28-216ENST00000533806 LCE3BQ5TA77 95 aa4.73□□□□□ -1.65
VPS28-216ENST00000533806 PSPHP1O15172 72 aa4.72□□□□□ -1.65
VPS28-216ENST00000533806 LCE3AQ5TA76 89 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms