RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 PRAC1Q96KF2 57 aa11.03□□□□□ -0.64
VPS28-205ENST00000526204 FAT3Q8TDW7 4589 aa11.02□□□□□ -0.65
VPS28-205ENST00000526204 LRP1Q07954 4544 aaKnown RBP11.02□□□□□ -0.65
VPS28-205ENST00000526204 ADM2Q7Z4H4 148 aa11.02□□□□□ -0.65
VPS28-205ENST00000526204 XP32Q5T750 250 aa11.01□□□□□ -0.65
VPS28-205ENST00000526204 KRTAP17-1Q9BYP8 105 aa10.99□□□□□ -0.65
VPS28-205ENST00000526204 DMBT1Q9UGM3 2413 aaPredicted RBP10.87□□□□□ -0.67
VPS28-205ENST00000526204 MT1HL1P0DM35 61 aa10.87□□□□□ -0.67
VPS28-205ENST00000526204 KRTAP3-3Q9BYR6 98 aa10.87□□□□□ -0.67
VPS28-205ENST00000526204 MYCBP2O75592 4640 aa10.83□□□□□ -0.68
VPS28-205ENST00000526204 S4R3F8 94 aa10.83□□□□□ -0.68
VPS28-205ENST00000526204 K7ERS5 55 aa10.79□□□□□ -0.68
VPS28-205ENST00000526204 CSAG1Q6PB30 78 aa10.78□□□□□ -0.68
VPS28-205ENST00000526204 KRTAP10-6P60371 365 aaPredicted RBP10.77□□□□□ -0.69
VPS28-205ENST00000526204 LINC01554Q52M75 96 aa10.74□□□□□ -0.69
VPS28-205ENST00000526204 TPRXLQ17RH7 258 aa10.7□□□□□ -0.7
VPS28-205ENST00000526204 KRTAP3-2Q9BYR7 98 aa10.7□□□□□ -0.7
VPS28-205ENST00000526204 KRTAP4-5Q9BYR2 181 aa10.62□□□□□ -0.71
VPS28-205ENST00000526204 KRTAP13-4Q3LI77 160 aa10.6□□□□□ -0.71
VPS28-205ENST00000526204 KRTAP25-1Q3LHN0 102 aa10.55□□□□□ -0.72
VPS28-205ENST00000526204 P0C880 135 aa10.54□□□□□ -0.72
VPS28-205ENST00000526204 A0A0D9SG42 100 aa10.51□□□□□ -0.73
VPS28-205ENST00000526204 BIRC6Q9NR09 4857 aa10.5□□□□□ -0.73
VPS28-205ENST00000526204 ROMO1P60602 79 aa10.48□□□□□ -0.73
VPS28-205ENST00000526204 ABCA13Q86UQ4 5058 aa10.46□□□□□ -0.73
VPS28-205ENST00000526204 HERC2O95714 4834 aa10.37□□□□□ -0.75
VPS28-205ENST00000526204 LRP2P98164 4655 aa10.36□□□□□ -0.75
VPS28-205ENST00000526204 LPAP08519 4548 aa10.33□□□□□ -0.76
VPS28-205ENST00000526204 M0QZ58 72 aa10.33□□□□□ -0.76
VPS28-205ENST00000526204 SEC61BP60468 96 aaKnown RBP10.31□□□□□ -0.76
VPS28-205ENST00000526204 CRIPTQ9P021 101 aa10.3□□□□□ -0.76
VPS28-205ENST00000526204 KRTAP12-2P59991 146 aa10.27□□□□□ -0.77
VPS28-205ENST00000526204 KRTAP12-1P59990 96 aa10.24□□□□□ -0.77
VPS28-205ENST00000526204 J3QL48 77 aa10.21□□□□□ -0.77
VPS28-205ENST00000526204 SPINT4Q6UDR6 99 aa10.19□□□□□ -0.78
VPS28-205ENST00000526204 R4GN34 69 aa10.05□□□□□ -0.8
VPS28-205ENST00000526204 PCLOQ9Y6V0 5065 aa10.05□□□□□ -0.8
VPS28-205ENST00000526204 KRTAP4-1Q9BYQ7 146 aa10.03□□□□□ -0.8
VPS28-205ENST00000526204 C10orf95Q9H7T3 257 aa9.98□□□□□ -0.81
VPS28-205ENST00000526204 MUC17Q685J3 4493 aa9.95□□□□□ -0.82
VPS28-205ENST00000526204 HERC1Q15751 4861 aa9.92□□□□□ -0.82
VPS28-205ENST00000526204 KRTAP19-2Q3LHN2 52 aa9.9□□□□□ -0.82
VPS28-205ENST00000526204 LORP23490 312 aaPredicted RBP9.83□□□□□ -0.84
VPS28-205ENST00000526204 HMCN2Q8NDA2 5059 aa9.73□□□□□ -0.85
VPS28-205ENST00000526204 MUC2Q02817 5179 aa9.68□□□□□ -0.86
VPS28-205ENST00000526204 KRTAP15-1Q3LI76 137 aa9.58□□□□□ -0.88
VPS28-205ENST00000526204 H3BS24 57 aa9.55□□□□□ -0.88
VPS28-205ENST00000526204 CAMK2N1Q7Z7J9 78 aa9.52□□□□□ -0.89
VPS28-205ENST00000526204 FLGP20930 4061 aaPredicted RBP9.51□□□□□ -0.89
VPS28-205ENST00000526204 PP632Q6XCG6 107 aa9.4□□□□□ -0.91
VPS28-205ENST00000526204 UBR4Q5T4S7 5183 aa9.35□□□□□ -0.91
VPS28-205ENST00000526204 LCE2CQ5TA81 110 aa9.32□□□□□ -0.92
VPS28-205ENST00000526204 RNF213Q63HN8 5207 aa9.3□□□□□ -0.92
VPS28-205ENST00000526204 NDUFAF8A1L188 74 aa9.26□□□□□ -0.93
VPS28-205ENST00000526204 PLAC4Q8WY50 150 aa9.25□□□□□ -0.93
VPS28-205ENST00000526204 FAT4Q6V0I7 4981 aa9.24□□□□□ -0.93
VPS28-205ENST00000526204 TNP1P09430 55 aa9.19□□□□□ -0.94
VPS28-205ENST00000526204 SPRR2GQ9BYE4 73 aa9.18□□□□□ -0.94
VPS28-205ENST00000526204 KRTAP23-1A1A580 65 aa9.14□□□□□ -0.95
VPS28-205ENST00000526204 M0R2T5 61 aa9.13□□□□□ -0.95
VPS28-205ENST00000526204 MT1HP80294 61 aa9.09□□□□□ -0.95
VPS28-205ENST00000526204 KRTAP19-1Q8IUB9 90 aa9.08□□□□□ -0.96
VPS28-205ENST00000526204 KRTAP10-10P60014 251 aa8.93□□□□□ -0.98
VPS28-205ENST00000526204 MT2AP02795 61 aa8.93□□□□□ -0.98
VPS28-205ENST00000526204 MT1FP04733 61 aa8.91□□□□□ -0.98
VPS28-205ENST00000526204 KRTAP9-8Q9BYQ0 159 aa8.88□□□□□ -0.99
VPS28-205ENST00000526204 LUZP6Q538Z0 58 aa8.84□□□□□ -0.99
VPS28-205ENST00000526204 KRTAP19-8Q3LI54 63 aa8.78□□□□□ -1
VPS28-205ENST00000526204 SPRR5A0A1B0GTR4 108 aa8.66□□□□□ -1.02
VPS28-205ENST00000526204 LCE3AQ5TA76 89 aa8.64□□□□□ -1.03
VPS28-205ENST00000526204 MT1BP07438 61 aa8.61□□□□□ -1.03
VPS28-205ENST00000526204 KRTAP10-5P60370 271 aa8.56□□□□□ -1.04
VPS28-205ENST00000526204 MT1XP80297 61 aa8.54□□□□□ -1.04
VPS28-205ENST00000526204 KRTAP9-3Q9BYQ3 159 aa8.52□□□□□ -1.05
VPS28-205ENST00000526204 KRTAP8-1Q8IUC2 63 aa8.5□□□□□ -1.05
VPS28-205ENST00000526204 LCE2AQ5TA79 106 aaPredicted RBP8.41□□□□□ -1.06
VPS28-205ENST00000526204 KRTAP10-12P60413 245 aa8.38□□□□□ -1.07
VPS28-205ENST00000526204 PRO2289Q9P1D8 64 aa8.35□□□□□ -1.07
VPS28-205ENST00000526204 A0A0A0MQY5 61 aa8.32□□□□□ -1.08
VPS28-205ENST00000526204 KRTAP12-3P60328 96 aa8.27□□□□□ -1.08
VPS28-205ENST00000526204 KRTAP10-7P60409 375 aaPredicted RBP8.26□□□□□ -1.09
VPS28-205ENST00000526204 LCE2BO14633 110 aa8.15□□□□□ -1.11
VPS28-205ENST00000526204 USH2AO75445 5202 aa8.03□□□□□ -1.12
VPS28-205ENST00000526204 KRTAP19-5Q3LI72 72 aa7.92□□□□□ -1.14
VPS28-205ENST00000526204 LCE3CQ5T5A8 94 aa7.79□□□□□ -1.16
VPS28-205ENST00000526204 KRTAP4-8A0A0G2JLE6 195 aa7.73□□□□□ -1.17
VPS28-205ENST00000526204 KRTAP4-8Q9BYQ9 185 aa7.73□□□□□ -1.17
VPS28-205ENST00000526204 LCE2DQ5TA82 110 aaPredicted RBP7.72□□□□□ -1.17
VPS28-205ENST00000526204 FSIP2Q5CZC0 6907 aa7.69□□□□□ -1.18
VPS28-205ENST00000526204 SSPOA2VEC9 5147 aa7.63□□□□□ -1.19
VPS28-205ENST00000526204 KRTAP9-2Q9BYQ4 174 aa7.63□□□□□ -1.19
VPS28-205ENST00000526204 KRTAP19-7Q3SYF9 63 aa7.6□□□□□ -1.19
VPS28-205ENST00000526204 INE1O15225 51 aa7.59□□□□□ -1.19
VPS28-205ENST00000526204 KRTAP19-4Q3LI73 84 aa7.58□□□□□ -1.2
VPS28-205ENST00000526204 KMT2DO14686 5537 aa7.57□□□□□ -1.2
VPS28-205ENST00000526204 KRTAP19-6Q3LI70 58 aa7.46□□□□□ -1.22
VPS28-205ENST00000526204 KRTAP9-6A8MVA2 160 aa7.42□□□□□ -1.22
VPS28-205ENST00000526204 MT1EP04732 61 aa7.41□□□□□ -1.22
VPS28-205ENST00000526204 MT1LQ93083 61 aa7.4□□□□□ -1.23
VPS28-205ENST00000526204 KRTAP9-6A0A140TA67 174 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms