RNA–Protein interactions for RNA: ENST00000525428.5

CLNS1A-204, Transcript of chloride nucleotide-sensitive channel 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLNS1A, Length 2,993 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLNS1A-204ENST00000525428 KRTAP3-1Q9BYR8 98 aa6.08□□□□□ -1.44
CLNS1A-204ENST00000525428 EPPK1P58107 5090 aaKnown RBP6.08□□□□□ -1.44
CLNS1A-204ENST00000525428 APOBP04114 4563 aaKnown RBP6.06□□□□□ -1.44
CLNS1A-204ENST00000525428 KIAA1109Q2LD37 5005 aa6.05□□□□□ -1.44
CLNS1A-204ENST00000525428 C9orf92A6NGG3 77 aa6.03□□□□□ -1.44
CLNS1A-204ENST00000525428 RPL37P61927 97 aaKnown RBP6□□□□□ -1.45
CLNS1A-204ENST00000525428 KRTAP15-1Q3LI76 137 aa6□□□□□ -1.45
CLNS1A-204ENST00000525428 A0A0A0MQY5 61 aa5.99□□□□□ -1.45
CLNS1A-204ENST00000525428 KRTAP17-1Q9BYP8 105 aa5.96□□□□□ -1.46
CLNS1A-204ENST00000525428 KRTAP1-4P0C5Y4 121 aa5.96□□□□□ -1.46
CLNS1A-204ENST00000525428 KRTAP13-4Q3LI77 160 aa5.96□□□□□ -1.46
CLNS1A-204ENST00000525428 HSPG2P98160 4391 aa5.96□□□□□ -1.46
CLNS1A-204ENST00000525428 LRP1Q07954 4544 aaKnown RBP5.93□□□□□ -1.46
CLNS1A-204ENST00000525428 RYR1P21817 5038 aa5.91□□□□□ -1.46
CLNS1A-204ENST00000525428 MYCBP2O75592 4640 aa5.9□□□□□ -1.46
CLNS1A-204ENST00000525428 KRTAP10-4P60372 401 aaPredicted RBP5.87□□□□□ -1.47
CLNS1A-204ENST00000525428 KRTAP10-6P60371 365 aaPredicted RBP5.87□□□□□ -1.47
CLNS1A-204ENST00000525428 Q5VSD8 79 aa5.85□□□□□ -1.47
CLNS1A-204ENST00000525428 S4R3F8 94 aa5.82□□□□□ -1.48
CLNS1A-204ENST00000525428 KRTAP12-2P59991 146 aa5.81□□□□□ -1.48
CLNS1A-204ENST00000525428 KRTAP4-5Q9BYR2 181 aa5.8□□□□□ -1.48
CLNS1A-204ENST00000525428 PKHD1L1Q86WI1 4243 aa5.78□□□□□ -1.48
CLNS1A-204ENST00000525428 KRTAP3-2Q9BYR7 98 aa5.77□□□□□ -1.49
CLNS1A-204ENST00000525428 KRTAP3-3Q9BYR6 98 aa5.76□□□□□ -1.49
CLNS1A-204ENST00000525428 LUZP6Q538Z0 58 aa5.75□□□□□ -1.49
CLNS1A-204ENST00000525428 ABCA13Q86UQ4 5058 aa5.73□□□□□ -1.49
CLNS1A-204ENST00000525428 LCE2DQ5TA82 110 aaPredicted RBP5.71□□□□□ -1.49
CLNS1A-204ENST00000525428 FAT3Q8TDW7 4589 aa5.7□□□□□ -1.5
CLNS1A-204ENST00000525428 HERC2O95714 4834 aa5.69□□□□□ -1.5
CLNS1A-204ENST00000525428 BIRC6Q9NR09 4857 aa5.69□□□□□ -1.5
CLNS1A-204ENST00000525428 TNXBP22105 4242 aa5.68□□□□□ -1.5
CLNS1A-204ENST00000525428 KRTAP12-1P59990 96 aa5.67□□□□□ -1.5
CLNS1A-204ENST00000525428 XP32Q5T750 250 aa5.65□□□□□ -1.51
CLNS1A-204ENST00000525428 RPS29P62273 56 aaKnown RBP5.64□□□□□ -1.51
CLNS1A-204ENST00000525428 KRTAP10-8P60410 259 aa5.62□□□□□ -1.51
CLNS1A-204ENST00000525428 MT1HL1P0DM35 61 aa5.6□□□□□ -1.51
CLNS1A-204ENST00000525428 PCLOQ9Y6V0 5065 aa5.59□□□□□ -1.52
CLNS1A-204ENST00000525428 PLAC4Q8WY50 150 aa5.57□□□□□ -1.52
CLNS1A-204ENST00000525428 HERC1Q15751 4861 aa5.53□□□□□ -1.52
CLNS1A-204ENST00000525428 LPAP08519 4548 aa5.52□□□□□ -1.53
CLNS1A-204ENST00000525428 J3QL48 77 aa5.49□□□□□ -1.53
CLNS1A-204ENST00000525428 LRP2P98164 4655 aa5.49□□□□□ -1.53
CLNS1A-204ENST00000525428 M0QZ58 72 aa5.43□□□□□ -1.54
CLNS1A-204ENST00000525428 R4GN34 69 aa5.36□□□□□ -1.55
CLNS1A-204ENST00000525428 MUC2Q02817 5179 aa5.34□□□□□ -1.55
CLNS1A-204ENST00000525428 HMCN2Q8NDA2 5059 aa5.26□□□□□ -1.57
CLNS1A-204ENST00000525428 LORP23490 312 aaPredicted RBP5.23□□□□□ -1.57
CLNS1A-204ENST00000525428 RNF213Q63HN8 5207 aa5.22□□□□□ -1.57
CLNS1A-204ENST00000525428 UBR4Q5T4S7 5183 aa5.22□□□□□ -1.57
CLNS1A-204ENST00000525428 CAMK2N1Q7Z7J9 78 aa5.18□□□□□ -1.58
CLNS1A-204ENST00000525428 KRTAP4-1Q9BYQ7 146 aa5.16□□□□□ -1.58
CLNS1A-204ENST00000525428 SEC61BP60468 96 aaKnown RBP5.15□□□□□ -1.58
CLNS1A-204ENST00000525428 PP632Q6XCG6 107 aa5.14□□□□□ -1.59
CLNS1A-204ENST00000525428 FAT4Q6V0I7 4981 aa5.1□□□□□ -1.59
CLNS1A-204ENST00000525428 MUC17Q685J3 4493 aa5.06□□□□□ -1.6
CLNS1A-204ENST00000525428 TNP1P09430 55 aa4.94□□□□□ -1.62
CLNS1A-204ENST00000525428 SPRR5A0A1B0GTR4 108 aa4.94□□□□□ -1.62
CLNS1A-204ENST00000525428 PRO2289Q9P1D8 64 aa4.93□□□□□ -1.62
CLNS1A-204ENST00000525428 KRTAP19-2Q3LHN2 52 aa4.9□□□□□ -1.63
CLNS1A-204ENST00000525428 FLGP20930 4061 aaPredicted RBP4.85□□□□□ -1.63
CLNS1A-204ENST00000525428 LCE2CQ5TA81 110 aa4.83□□□□□ -1.64
CLNS1A-204ENST00000525428 M0R2T5 61 aa4.77□□□□□ -1.65
CLNS1A-204ENST00000525428 INE1O15225 51 aa4.72□□□□□ -1.65
CLNS1A-204ENST00000525428 MT1HP80294 61 aa4.72□□□□□ -1.65
CLNS1A-204ENST00000525428 KRTAP23-1A1A580 65 aa4.72□□□□□ -1.65
CLNS1A-204ENST00000525428 LCE3AQ5TA76 89 aa4.67□□□□□ -1.66
CLNS1A-204ENST00000525428 LCE2BO14633 110 aa4.55□□□□□ -1.68
CLNS1A-204ENST00000525428 KRTAP10-10P60014 251 aa4.55□□□□□ -1.68
CLNS1A-204ENST00000525428 MT1FP04733 61 aa4.55□□□□□ -1.68
CLNS1A-204ENST00000525428 KRTAP9-8Q9BYQ0 159 aa4.55□□□□□ -1.68
CLNS1A-204ENST00000525428 MT2AP02795 61 aa4.54□□□□□ -1.68
CLNS1A-204ENST00000525428 FSIP2Q5CZC0 6907 aa4.51□□□□□ -1.69
CLNS1A-204ENST00000525428 LCE2AQ5TA79 106 aaPredicted RBP4.5□□□□□ -1.69
CLNS1A-204ENST00000525428 USH2AO75445 5202 aa4.5□□□□□ -1.69
CLNS1A-204ENST00000525428 KRTAP19-1Q8IUB9 90 aa4.43□□□□□ -1.7
CLNS1A-204ENST00000525428 KRTAP8-1Q8IUC2 63 aa4.41□□□□□ -1.7
CLNS1A-204ENST00000525428 LOC100996750A0A140TA64 210 aa4.41□□□□□ -1.7
CLNS1A-204ENST00000525428 KRTAP4-6Q9BYQ5 205 aa4.41□□□□□ -1.7
CLNS1A-204ENST00000525428 KRTAP12-3P60328 96 aa4.39□□□□□ -1.71
CLNS1A-204ENST00000525428 SPRR2GQ9BYE4 73 aa4.38□□□□□ -1.71
CLNS1A-204ENST00000525428 KRTAP9-3Q9BYQ3 159 aa4.36□□□□□ -1.71
CLNS1A-204ENST00000525428 KRTAP10-12P60413 245 aa4.36□□□□□ -1.71
CLNS1A-204ENST00000525428 KMT2DO14686 5537 aa4.31□□□□□ -1.72
CLNS1A-204ENST00000525428 MT1BP07438 61 aa4.26□□□□□ -1.73
CLNS1A-204ENST00000525428 KRTAP10-5P60370 271 aa4.21□□□□□ -1.74
CLNS1A-204ENST00000525428 KRTAP19-8Q3LI54 63 aa4.21□□□□□ -1.74
CLNS1A-204ENST00000525428 SSPOA2VEC9 5147 aa4.21□□□□□ -1.74
CLNS1A-204ENST00000525428 KRTAP10-7P60409 375 aaPredicted RBP4.2□□□□□ -1.74
CLNS1A-204ENST00000525428 MT1XP80297 61 aa4.2□□□□□ -1.74
CLNS1A-204ENST00000525428 LCE3CQ5T5A8 94 aa4.13□□□□□ -1.75
CLNS1A-204ENST00000525428 KRTAP9-6A8MVA2 160 aa4.1□□□□□ -1.75
CLNS1A-204ENST00000525428 KRTAP19-5Q3LI72 72 aa4.08□□□□□ -1.76
CLNS1A-204ENST00000525428 FCGBPQ9Y6R7 5405 aaPredicted RBP4.02□□□□□ -1.77
CLNS1A-204ENST00000525428 KRTAP9-2Q9BYQ4 174 aa4.01□□□□□ -1.77
CLNS1A-204ENST00000525428 KRTAP4-7Q9BYR0 210 aa3.99□□□□□ -1.77
CLNS1A-204ENST00000525428 KRTAP2-3P0C7H8 128 aa3.97□□□□□ -1.77
CLNS1A-204ENST00000525428 KRTAP2-4Q9BYR9 128 aa3.97□□□□□ -1.77
CLNS1A-204ENST00000525428 KRTAP2-1Q9BYU5 128 aa3.97□□□□□ -1.77
CLNS1A-204ENST00000525428 KRTAP4-8Q9BYQ9 185 aa3.97□□□□□ -1.77
CLNS1A-204ENST00000525428 KRTAP4-8A0A0G2JLE6 195 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms