RNA–Protein interactions for RNA: ENST00000525428.5

CLNS1A-204, Transcript of chloride nucleotide-sensitive channel 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLNS1A, Length 2,993 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLNS1A-204ENST00000525428 NISCHQ9Y2I1 1504 aa22.31■■□□□ 1.16
CLNS1A-204ENST00000525428 CCDC180Q9P1Z9 1646 aa19.16■□□□□ 0.66
CLNS1A-204ENST00000525428 HRCP23327 699 aa19.13■□□□□ 0.65
CLNS1A-204ENST00000525428 DCAF8L2P0C7V8 631 aa19.08■□□□□ 0.64
CLNS1A-204ENST00000525428 PPARGC1BQ86YN6 1023 aaKnown RBP18.96■□□□□ 0.63
CLNS1A-204ENST00000525428 PCGF6Q9BYE7 350 aa18.79■□□□□ 0.6
CLNS1A-204ENST00000525428 PELP1Q8IZL8 1130 aaKnown RBP18.78■□□□□ 0.6
CLNS1A-204ENST00000525428 ABCC9O60706 1549 aa18.75■□□□□ 0.59
CLNS1A-204ENST00000525428 SHROOM4Q9ULL8 1493 aa18.72■□□□□ 0.59
CLNS1A-204ENST00000525428 ZCCHC6Q5VYS8 1495 aaKnown RBP18.67■□□□□ 0.58
CLNS1A-204ENST00000525428 SUPT5HO00267 1087 aaKnown RBP18.54■□□□□ 0.56
CLNS1A-204ENST00000525428 SCAF1Q9H7N4 1312 aaKnown RBP18.36■□□□□ 0.53
CLNS1A-204ENST00000525428 MYO15BQ96JP2 1530 aa18.27■□□□□ 0.52
CLNS1A-204ENST00000525428 DCAF1Q9Y4B6 1507 aa18.18■□□□□ 0.5
CLNS1A-204ENST00000525428 CHIC1Q5VXU3 224 aa18.12■□□□□ 0.49
CLNS1A-204ENST00000525428 MYT1Q01538 1121 aa18.07■□□□□ 0.48
CLNS1A-204ENST00000525428 SCRIBQ14160 1630 aa18.04■□□□□ 0.48
CLNS1A-204ENST00000525428 NACADO15069 1562 aa17.99■□□□□ 0.47
CLNS1A-204ENST00000525428 LOC105371045A0A1W2PR82 267 aa17.94■□□□□ 0.46
CLNS1A-204ENST00000525428 RB1CC1Q8TDY2 1594 aa17.9■□□□□ 0.46
CLNS1A-204ENST00000525428 TRIM26Q12899 539 aaPredicted RBP17.89■□□□□ 0.45
CLNS1A-204ENST00000525428 PABPN1Q86U42 306 aaKnown RBP eCLIP17.87■□□□□ 0.45
CLNS1A-204ENST00000525428 NEUROD1Q13562 356 aa17.77■□□□□ 0.44
CLNS1A-204ENST00000525428 ZEB1P37275 1124 aaPredicted RBP17.76■□□□□ 0.43
CLNS1A-204ENST00000525428 ACIN1Q9UKV3 1341 aaKnown RBP17.75■□□□□ 0.43
CLNS1A-204ENST00000525428 GTF3C3Q9Y5Q9 886 aa17.73■□□□□ 0.43
CLNS1A-204ENST00000525428 CECR2Q9BXF3 1484 aa17.57■□□□□ 0.4
CLNS1A-204ENST00000525428 UNC13AQ9UPW8 1703 aa17.54■□□□□ 0.4
CLNS1A-204ENST00000525428 CENPBP07199 599 aaPredicted RBP17.49■□□□□ 0.39
CLNS1A-204ENST00000525428 BICRAQ9NZM4 1560 aa17.46■□□□□ 0.39
CLNS1A-204ENST00000525428 RSF1Q96T23 1441 aaPredicted RBP17.41■□□□□ 0.38
CLNS1A-204ENST00000525428 MROH2BQ7Z745 1585 aa17.36■□□□□ 0.37
CLNS1A-204ENST00000525428 DIEXFQ68CQ4 756 aaKnown RBP17.34■□□□□ 0.37
CLNS1A-204ENST00000525428 EHMT2Q96KQ7 1210 aa17.34■□□□□ 0.37
CLNS1A-204ENST00000525428 YTHDC1Q96MU7 727 aaKnown RBP17.31■□□□□ 0.36
CLNS1A-204ENST00000525428 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.3■□□□□ 0.36
CLNS1A-204ENST00000525428 CCER1Q8TC90 406 aaPredicted RBP17.24■□□□□ 0.35
CLNS1A-204ENST00000525428 FAM9AQ8IZU1 332 aaPredicted RBP17.22■□□□□ 0.35
CLNS1A-204ENST00000525428 WIZO95785 1651 aa17.19■□□□□ 0.34
CLNS1A-204ENST00000525428 BAZ1AQ9NRL2 1556 aaPredicted RBP17.16■□□□□ 0.34
CLNS1A-204ENST00000525428 BCL11AQ9H165 835 aa17.14■□□□□ 0.33
CLNS1A-204ENST00000525428 SMARCA4P51532 1647 aa17.11■□□□□ 0.33
CLNS1A-204ENST00000525428 TRIM41Q8WV44 630 aa16.97■□□□□ 0.31
CLNS1A-204ENST00000525428 TTBK1Q5TCY1 1321 aaPredicted RBP16.96■□□□□ 0.31
CLNS1A-204ENST00000525428 EIF4G1Q04637 1599 aaKnown RBP16.95■□□□□ 0.3
CLNS1A-204ENST00000525428 ATAD2BQ9ULI0 1458 aa16.94■□□□□ 0.3
CLNS1A-204ENST00000525428 MIER1Q8N108 512 aa16.9■□□□□ 0.3
CLNS1A-204ENST00000525428 ANP32EQ9BTT0 268 aa16.89■□□□□ 0.3
CLNS1A-204ENST00000525428 ZNF316A6NFI3 1004 aaPredicted RBP16.86■□□□□ 0.29
CLNS1A-204ENST00000525428 CCDC88BA6NC98 1476 aa16.86■□□□□ 0.29
CLNS1A-204ENST00000525428 BAZ1BQ9UIG0 1483 aaKnown RBP16.85■□□□□ 0.29
CLNS1A-204ENST00000525428 TOP2AP11388 1531 aaKnown RBP16.84■□□□□ 0.29
CLNS1A-204ENST00000525428 DNAJC5BQ9UF47 199 aa16.84■□□□□ 0.29
CLNS1A-204ENST00000525428 CSRNP3Q8WYN3 585 aa16.82■□□□□ 0.28
CLNS1A-204ENST00000525428 SMARCA2P51531 1590 aa16.77■□□□□ 0.28
CLNS1A-204ENST00000525428 CC2D2AQ9P2K1 1620 aa16.75■□□□□ 0.27
CLNS1A-204ENST00000525428 PEG3Q9GZU2 1588 aa16.75■□□□□ 0.27
CLNS1A-204ENST00000525428 TSHZ2Q9NRE2 1034 aa16.74■□□□□ 0.27
CLNS1A-204ENST00000525428 SUPT16HQ9Y5B9 1047 aaKnown RBP16.72■□□□□ 0.27
CLNS1A-204ENST00000525428 NCAPD3P42695 1498 aa16.72■□□□□ 0.27
CLNS1A-204ENST00000525428 PRKCSHP14314 528 aaPredicted RBP16.63■□□□□ 0.25
CLNS1A-204ENST00000525428 ABCC8Q09428 1581 aa16.58■□□□□ 0.25
CLNS1A-204ENST00000525428 HMGXB3Q12766 1538 aa16.56■□□□□ 0.24
CLNS1A-204ENST00000525428 BCANQ96GW7 911 aa16.55■□□□□ 0.24
CLNS1A-204ENST00000525428 NESP48681 1621 aa16.44■□□□□ 0.22
CLNS1A-204ENST00000525428 HNRNPUL2Q1KMD3 747 aaKnown RBP16.42■□□□□ 0.22
CLNS1A-204ENST00000525428 CADPSQ9ULU8 1353 aa16.4■□□□□ 0.22
CLNS1A-204ENST00000525428 CLSPNQ9HAW4 1339 aa16.4■□□□□ 0.22
CLNS1A-204ENST00000525428 WRNQ14191 1432 aaPredicted RBP eCLIP16.38■□□□□ 0.21
CLNS1A-204ENST00000525428 CFTRP13569 1480 aa16.37■□□□□ 0.21
CLNS1A-204ENST00000525428 RBM19Q9Y4C8 960 aaKnown RBP16.34■□□□□ 0.21
CLNS1A-204ENST00000525428 SOGA1O94964 1423 aa16.32■□□□□ 0.2
CLNS1A-204ENST00000525428 FKBP8Q14318 412 aa16.31■□□□□ 0.2
CLNS1A-204ENST00000525428 RUSC2Q8N2Y8 1516 aa16.29■□□□□ 0.2
CLNS1A-204ENST00000525428 SYNJ1O43426 1573 aa16.28■□□□□ 0.2
CLNS1A-204ENST00000525428 ITGAEP38570 1179 aa16.27■□□□□ 0.2
CLNS1A-204ENST00000525428 KCNH8Q96L42 1107 aa16.26■□□□□ 0.19
CLNS1A-204ENST00000525428 FANCD2Q9BXW9 1451 aa16.23■□□□□ 0.19
CLNS1A-204ENST00000525428 MSH5O43196 834 aa16.22■□□□□ 0.19
CLNS1A-204ENST00000525428 CUX1P39880 1505 aa16.19■□□□□ 0.18
CLNS1A-204ENST00000525428 ERICH6Q7L0X2 663 aa16.18■□□□□ 0.18
CLNS1A-204ENST00000525428 CEP162Q5TB80 1403 aa16.15■□□□□ 0.18
CLNS1A-204ENST00000525428 UBTFP17480 764 aaKnown RBP16.14■□□□□ 0.17
CLNS1A-204ENST00000525428 RANGAP1P46060 587 aaPredicted RBP16.14■□□□□ 0.17
CLNS1A-204ENST00000525428 ANO8Q9HCE9 1232 aaPredicted RBP16.14■□□□□ 0.17
CLNS1A-204ENST00000525428 NEFLP07196 543 aa16.1■□□□□ 0.17
CLNS1A-204ENST00000525428 PDS5BQ9NTI5 1447 aa16.09■□□□□ 0.17
CLNS1A-204ENST00000525428 TOP2BQ02880 1626 aa16.08■□□□□ 0.17
CLNS1A-204ENST00000525428 CEP164Q9UPV0 1460 aa16.07■□□□□ 0.16
CLNS1A-204ENST00000525428 LAMC3Q9Y6N6 1575 aa16.07■□□□□ 0.16
CLNS1A-204ENST00000525428 RAD54L2Q9Y4B4 1467 aa16.06■□□□□ 0.16
CLNS1A-204ENST00000525428 FGD5Q6ZNL6 1462 aa16.04■□□□□ 0.16
CLNS1A-204ENST00000525428 DEKP35659 375 aaKnown RBP16.04■□□□□ 0.16
CLNS1A-204ENST00000525428 URB2Q14146 1524 aaKnown RBP16.03■□□□□ 0.16
CLNS1A-204ENST00000525428 TOPBP1Q92547 1522 aa16.01■□□□□ 0.15
CLNS1A-204ENST00000525428 TRIM52Q96A61 297 aa16.01■□□□□ 0.15
CLNS1A-204ENST00000525428 CUX2O14529 1486 aa16■□□□□ 0.15
CLNS1A-204ENST00000525428 KIF21AQ7Z4S6 1674 aa15.99■□□□□ 0.15
CLNS1A-204ENST00000525428 ERCC6Q03468 1493 aa15.99■□□□□ 0.15
CLNS1A-204ENST00000525428 BIVM-ERCC5R4GMW8 1640 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms