RNA–Protein interactions for RNA: ENST00000523483.5

SDCBP-212, Transcript of syndecan binding protein, humanhuman

TSL 2 BASIC

Gene SDCBP, Length 3,589 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-212ENST00000523483 LCA10Q71F78 164 aa4.62□□□□□ -1.67
SDCBP-212ENST00000523483 KRTAP3-3Q9BYR6 98 aa4.61□□□□□ -1.67
SDCBP-212ENST00000523483 KRTAP3-2Q9BYR7 98 aa4.61□□□□□ -1.67
SDCBP-212ENST00000523483 KRTAP19-2Q3LHN2 52 aa4.6□□□□□ -1.67
SDCBP-212ENST00000523483 LCE2CQ5TA81 110 aa4.57□□□□□ -1.68
SDCBP-212ENST00000523483 CSAG1Q6PB30 78 aa4.55□□□□□ -1.68
SDCBP-212ENST00000523483 SERP1Q9Y6X1 66 aa4.55□□□□□ -1.68
SDCBP-212ENST00000523483 FLGP20930 4061 aaPredicted RBP4.54□□□□□ -1.68
SDCBP-212ENST00000523483 MT1HP80294 61 aa4.53□□□□□ -1.68
SDCBP-212ENST00000523483 SPTSSBQ8NFR3 76 aa4.53□□□□□ -1.68
SDCBP-212ENST00000523483 SEC61GP60059 68 aa4.45□□□□□ -1.7
SDCBP-212ENST00000523483 ADM2Q7Z4H4 148 aa4.45□□□□□ -1.7
SDCBP-212ENST00000523483 SMIM26A0A096LP01 95 aa4.43□□□□□ -1.7
SDCBP-212ENST00000523483 A0A1B0GU69 56 aa4.43□□□□□ -1.7
SDCBP-212ENST00000523483 PSPHP1O15172 72 aa4.43□□□□□ -1.7
SDCBP-212ENST00000523483 RPS28P62857 69 aaKnown RBP4.43□□□□□ -1.7
SDCBP-212ENST00000523483 PRR15LQ9BU68 103 aa4.42□□□□□ -1.7
SDCBP-212ENST00000523483 P0C880 135 aa4.39□□□□□ -1.71
SDCBP-212ENST00000523483 KRTAP10-10P60014 251 aa4.38□□□□□ -1.71
SDCBP-212ENST00000523483 LCE2AQ5TA79 106 aaPredicted RBP4.38□□□□□ -1.71
SDCBP-212ENST00000523483 KRTAP10-6P60371 365 aaPredicted RBP4.38□□□□□ -1.71
SDCBP-212ENST00000523483 LINC01558Q9Y6Z2 57 aa4.35□□□□□ -1.71
SDCBP-212ENST00000523483 V9GYY9 64 aa4.35□□□□□ -1.71
SDCBP-212ENST00000523483 LINC01554Q52M75 96 aa4.34□□□□□ -1.71
SDCBP-212ENST00000523483 LORP23490 312 aaPredicted RBP4.33□□□□□ -1.72
SDCBP-212ENST00000523483 MT2AP02795 61 aa4.33□□□□□ -1.72
SDCBP-212ENST00000523483 Q1T7F1 81 aa4.33□□□□□ -1.72
SDCBP-212ENST00000523483 R4GN34 69 aa4.33□□□□□ -1.72
SDCBP-212ENST00000523483 KRTAP9-8Q9BYQ0 159 aa4.32□□□□□ -1.72
SDCBP-212ENST00000523483 MT1FP04733 61 aa4.32□□□□□ -1.72
SDCBP-212ENST00000523483 A0A1B0GU33 70 aa4.31□□□□□ -1.72
SDCBP-212ENST00000523483 M0QZ58 72 aa4.31□□□□□ -1.72
SDCBP-212ENST00000523483 SPATA8Q6RVD6 105 aa4.3□□□□□ -1.72
SDCBP-212ENST00000523483 H0YAA0 97 aa4.3□□□□□ -1.72
SDCBP-212ENST00000523483 A0A0D9SG42 100 aa4.28□□□□□ -1.72
SDCBP-212ENST00000523483 FSIP2Q5CZC0 6907 aa4.28□□□□□ -1.72
SDCBP-212ENST00000523483 A6NED7 52 aa4.28□□□□□ -1.72
SDCBP-212ENST00000523483 Q5VV11 94 aa4.27□□□□□ -1.73
SDCBP-212ENST00000523483 UQCR11O14957 56 aa4.24□□□□□ -1.73
SDCBP-212ENST00000523483 KRTAP13-4Q3LI77 160 aa4.24□□□□□ -1.73
SDCBP-212ENST00000523483 A8MU10 97 aa4.22□□□□□ -1.73
SDCBP-212ENST00000523483 MIR22HGQ0VDD5 57 aa4.2□□□□□ -1.74
SDCBP-212ENST00000523483 USH2AO75445 5202 aa4.18□□□□□ -1.74
SDCBP-212ENST00000523483 SPINT4Q6UDR6 99 aa4.18□□□□□ -1.74
SDCBP-212ENST00000523483 CRIPTQ9P021 101 aa4.18□□□□□ -1.74
SDCBP-212ENST00000523483 BRK1Q8WUW1 75 aa4.16□□□□□ -1.74
SDCBP-212ENST00000523483 KRTAP19-1Q8IUB9 90 aa4.16□□□□□ -1.74
SDCBP-212ENST00000523483 KRTAP9-3Q9BYQ3 159 aa4.16□□□□□ -1.74
SDCBP-212ENST00000523483 SPRR2GQ9BYE4 73 aa4.13□□□□□ -1.75
SDCBP-212ENST00000523483 LCE2BO14633 110 aa4.1□□□□□ -1.75
SDCBP-212ENST00000523483 PLAC4Q8WY50 150 aa4.09□□□□□ -1.76
SDCBP-212ENST00000523483 CAMK2N1Q7Z7J9 78 aa4.07□□□□□ -1.76
SDCBP-212ENST00000523483 CDC42SE1Q9NRR8 79 aa4.07□□□□□ -1.76
SDCBP-212ENST00000523483 KRTAP12-2P59991 146 aa4.07□□□□□ -1.76
SDCBP-212ENST00000523483 K7ERS5 55 aa4.06□□□□□ -1.76
SDCBP-212ENST00000523483 SVIPQ8NHG7 77 aa4.06□□□□□ -1.76
SDCBP-212ENST00000523483 KRTAP12-1P59990 96 aa4.04□□□□□ -1.76
SDCBP-212ENST00000523483 KRTAP9-2Q9BYQ4 174 aa4.02□□□□□ -1.77
SDCBP-212ENST00000523483 MT1BP07438 61 aa4.02□□□□□ -1.77
SDCBP-212ENST00000523483 KRTAP19-8Q3LI54 63 aa4.01□□□□□ -1.77
SDCBP-212ENST00000523483 A6NN06 94 aa3.98□□□□□ -1.77
SDCBP-212ENST00000523483 SSPOA2VEC9 5147 aa3.97□□□□□ -1.77
SDCBP-212ENST00000523483 PMAIP1Q13794 54 aa3.91□□□□□ -1.78
SDCBP-212ENST00000523483 PRO0628Q9UI54 55 aa3.89□□□□□ -1.79
SDCBP-212ENST00000523483 PRO2289Q9P1D8 64 aa3.89□□□□□ -1.79
SDCBP-212ENST00000523483 MT1XP80297 61 aa3.87□□□□□ -1.79
SDCBP-212ENST00000523483 KRTAP10-5P60370 271 aa3.86□□□□□ -1.79
SDCBP-212ENST00000523483 CRCT1Q9UGL9 99 aa3.85□□□□□ -1.79
SDCBP-212ENST00000523483 C10orf95Q9H7T3 257 aa3.84□□□□□ -1.79
SDCBP-212ENST00000523483 FCGBPQ9Y6R7 5405 aaPredicted RBP3.82□□□□□ -1.8
SDCBP-212ENST00000523483 ROMO1P60602 79 aa3.82□□□□□ -1.8
SDCBP-212ENST00000523483 KRTAP19-6Q3LI70 58 aa3.82□□□□□ -1.8
SDCBP-212ENST00000523483 KMT2DO14686 5537 aa3.8□□□□□ -1.8
SDCBP-212ENST00000523483 TNP1P09430 55 aa3.78□□□□□ -1.8
SDCBP-212ENST00000523483 KRTAP10-7P60409 375 aaPredicted RBP3.76□□□□□ -1.81
SDCBP-212ENST00000523483 MACF1Q9UPN3 7388 aaKnown RBP3.75□□□□□ -1.81
SDCBP-212ENST00000523483 KRTAP9-6A0A140TA67 174 aa3.74□□□□□ -1.81
SDCBP-212ENST00000523483 SYNE2Q8WXH0 6885 aaKnown RBP3.71□□□□□ -1.81
SDCBP-212ENST00000523483 PRAC1Q96KF2 57 aa3.71□□□□□ -1.82
SDCBP-212ENST00000523483 KRTAP10-12P60413 245 aa3.69□□□□□ -1.82
SDCBP-212ENST00000523483 KRTAP4-8A0A0G2JLE6 195 aa3.69□□□□□ -1.82
SDCBP-212ENST00000523483 KRTAP25-1Q3LHN0 102 aa3.69□□□□□ -1.82
SDCBP-212ENST00000523483 KRTAP4-8Q9BYQ9 185 aa3.69□□□□□ -1.82
SDCBP-212ENST00000523483 LCE3AQ5TA76 89 aa3.64□□□□□ -1.83
SDCBP-212ENST00000523483 KTN1-AS1Q86SY8 53 aa3.63□□□□□ -1.83
SDCBP-212ENST00000523483 KRTAP8-1Q8IUC2 63 aa3.6□□□□□ -1.83
SDCBP-212ENST00000523483 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.55□□□□□ -1.84
SDCBP-212ENST00000523483 MUC12Q9UKN1 5478 aa3.53□□□□□ -1.84
SDCBP-212ENST00000523483 SPRR2FQ96RM1 72 aa3.53□□□□□ -1.84
SDCBP-212ENST00000523483 KRTAP19-5Q3LI72 72 aa3.52□□□□□ -1.85
SDCBP-212ENST00000523483 PP632Q6XCG6 107 aa3.52□□□□□ -1.85
SDCBP-212ENST00000523483 KRTAP12-3P60328 96 aa3.49□□□□□ -1.85
SDCBP-212ENST00000523483 MDN1Q9NU22 5596 aa3.45□□□□□ -1.86
SDCBP-212ENST00000523483 KRTAP19-7Q3SYF9 63 aa3.45□□□□□ -1.86
SDCBP-212ENST00000523483 KRTAP23-1A1A580 65 aa3.44□□□□□ -1.86
SDCBP-212ENST00000523483 LOC100996750A0A140TA64 210 aa3.44□□□□□ -1.86
SDCBP-212ENST00000523483 KRTAP4-6Q9BYQ5 205 aa3.44□□□□□ -1.86
SDCBP-212ENST00000523483 KRTAP9-7A8MTY7 169 aa3.43□□□□□ -1.86
SDCBP-212ENST00000523483 MT1EP04732 61 aa3.4□□□□□ -1.87
SDCBP-212ENST00000523483 DSTQ03001 7570 aaKnown RBP3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms