RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 LCA10Q71F78 164 aa7.86□□□□□ -1.15
LSM1-204ENST00000522515 KRTAP10-6P60371 365 aaPredicted RBP7.85□□□□□ -1.15
LSM1-204ENST00000522515 SPANXA2-OT1Q8N9U9 137 aa7.85□□□□□ -1.15
LSM1-204ENST00000522515 LORP23490 312 aaPredicted RBP7.83□□□□□ -1.16
LSM1-204ENST00000522515 KRTAP3-3Q9BYR6 98 aa7.81□□□□□ -1.16
LSM1-204ENST00000522515 ACYP2P14621 99 aa7.78□□□□□ -1.16
LSM1-204ENST00000522515 CSAG1Q6PB30 78 aa7.76□□□□□ -1.17
LSM1-204ENST00000522515 ATP5EP56381 51 aaPredicted RBP7.75□□□□□ -1.17
LSM1-204ENST00000522515 KRTAP9-8Q9BYQ0 159 aa7.74□□□□□ -1.17
LSM1-204ENST00000522515 RPS28P62857 69 aaKnown RBP7.73□□□□□ -1.17
LSM1-204ENST00000522515 SVIPQ8NHG7 77 aa7.71□□□□□ -1.17
LSM1-204ENST00000522515 MT2AP02795 61 aa7.68□□□□□ -1.18
LSM1-204ENST00000522515 CHKB-CPT1BH3BT56 60 aa7.64□□□□□ -1.19
LSM1-204ENST00000522515 MT1FP04733 61 aa7.63□□□□□ -1.19
LSM1-204ENST00000522515 COA5Q86WW8 74 aa7.63□□□□□ -1.19
LSM1-204ENST00000522515 SERP1Q9Y6X1 66 aa7.62□□□□□ -1.19
LSM1-204ENST00000522515 KRTAP10-10P60014 251 aa7.59□□□□□ -1.19
LSM1-204ENST00000522515 SPTSSBQ8NFR3 76 aa7.56□□□□□ -1.2
LSM1-204ENST00000522515 H0YAA0 97 aa7.54□□□□□ -1.2
LSM1-204ENST00000522515 ADM2Q7Z4H4 148 aa7.49□□□□□ -1.21
LSM1-204ENST00000522515 KRTAP9-3Q9BYQ3 159 aa7.48□□□□□ -1.21
LSM1-204ENST00000522515 LCE2DQ5TA82 110 aaPredicted RBP7.46□□□□□ -1.21
LSM1-204ENST00000522515 KRTAP3-2Q9BYR7 98 aa7.43□□□□□ -1.22
LSM1-204ENST00000522515 SMIM26A0A096LP01 95 aa7.41□□□□□ -1.22
LSM1-204ENST00000522515 P0C880 135 aa7.41□□□□□ -1.22
LSM1-204ENST00000522515 KRTAP9-2Q9BYQ4 174 aa7.41□□□□□ -1.22
LSM1-204ENST00000522515 LCE2BO14633 110 aa7.34□□□□□ -1.23
LSM1-204ENST00000522515 KRTAP19-1Q8IUB9 90 aa7.34□□□□□ -1.23
LSM1-204ENST00000522515 CRIPTQ9P021 101 aa7.34□□□□□ -1.23
LSM1-204ENST00000522515 SPRR2GQ9BYE4 73 aa7.32□□□□□ -1.24
LSM1-204ENST00000522515 SEC61GP60059 68 aa7.27□□□□□ -1.25
LSM1-204ENST00000522515 Q1T7F1 81 aa7.27□□□□□ -1.25
LSM1-204ENST00000522515 R4GN34 69 aa7.25□□□□□ -1.25
LSM1-204ENST00000522515 M0QZ58 72 aa7.22□□□□□ -1.25
LSM1-204ENST00000522515 V9GYY9 64 aa7.22□□□□□ -1.25
LSM1-204ENST00000522515 USH2AO75445 5202 aa7.21□□□□□ -1.25
LSM1-204ENST00000522515 A0A1B0GU69 56 aa7.21□□□□□ -1.25
LSM1-204ENST00000522515 LINC01558Q9Y6Z2 57 aa7.19□□□□□ -1.26
LSM1-204ENST00000522515 KRTAP19-8Q3LI54 63 aa7.18□□□□□ -1.26
LSM1-204ENST00000522515 FSIP2Q5CZC0 6907 aa7.16□□□□□ -1.26
LSM1-204ENST00000522515 PRO0628Q9UI54 55 aa7.16□□□□□ -1.26
LSM1-204ENST00000522515 PSPHP1O15172 72 aa7.15□□□□□ -1.27
LSM1-204ENST00000522515 PRR15LQ9BU68 103 aa7.14□□□□□ -1.27
LSM1-204ENST00000522515 MT1BP07438 61 aa7.13□□□□□ -1.27
LSM1-204ENST00000522515 KRTAP13-4Q3LI77 160 aa7.13□□□□□ -1.27
LSM1-204ENST00000522515 Q5VV11 94 aa7.13□□□□□ -1.27
LSM1-204ENST00000522515 A0A1B0GU33 70 aa7.12□□□□□ -1.27
LSM1-204ENST00000522515 LINC01554Q52M75 96 aa7.11□□□□□ -1.27
LSM1-204ENST00000522515 CRCT1Q9UGL9 99 aa7.08□□□□□ -1.28
LSM1-204ENST00000522515 SSPOA2VEC9 5147 aa7.06□□□□□ -1.28
LSM1-204ENST00000522515 SPATA8Q6RVD6 105 aa7.05□□□□□ -1.28
LSM1-204ENST00000522515 KRTAP9-6A0A140TA67 174 aa6.99□□□□□ -1.29
LSM1-204ENST00000522515 BRK1Q8WUW1 75 aa6.99□□□□□ -1.29
LSM1-204ENST00000522515 KRTAP19-6Q3LI70 58 aa6.98□□□□□ -1.29
LSM1-204ENST00000522515 PLAC4Q8WY50 150 aa6.96□□□□□ -1.29
LSM1-204ENST00000522515 A0A0D9SG42 100 aa6.95□□□□□ -1.3
LSM1-204ENST00000522515 A6NN06 94 aa6.94□□□□□ -1.3
LSM1-204ENST00000522515 A6NED7 52 aa6.92□□□□□ -1.3
LSM1-204ENST00000522515 UQCR11O14957 56 aa6.91□□□□□ -1.3
LSM1-204ENST00000522515 A8MU10 97 aa6.9□□□□□ -1.31
LSM1-204ENST00000522515 KRTAP10-5P60370 271 aa6.85□□□□□ -1.31
LSM1-204ENST00000522515 KRTAP12-1P59990 96 aa6.82□□□□□ -1.32
LSM1-204ENST00000522515 FCGBPQ9Y6R7 5405 aaPredicted RBP6.82□□□□□ -1.32
LSM1-204ENST00000522515 MT1XP80297 61 aa6.81□□□□□ -1.32
LSM1-204ENST00000522515 MIR22HGQ0VDD5 57 aa6.81□□□□□ -1.32
LSM1-204ENST00000522515 SPINT4Q6UDR6 99 aa6.81□□□□□ -1.32
LSM1-204ENST00000522515 CDC42SE1Q9NRR8 79 aa6.81□□□□□ -1.32
LSM1-204ENST00000522515 KRTAP12-2P59991 146 aa6.79□□□□□ -1.32
LSM1-204ENST00000522515 PRO2289Q9P1D8 64 aa6.76□□□□□ -1.33
LSM1-204ENST00000522515 CAMK2N1Q7Z7J9 78 aa6.74□□□□□ -1.33
LSM1-204ENST00000522515 PMAIP1Q13794 54 aa6.68□□□□□ -1.34
LSM1-204ENST00000522515 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.57□□□□□ -1.36
LSM1-204ENST00000522515 KTN1-AS1Q86SY8 53 aa6.57□□□□□ -1.36
LSM1-204ENST00000522515 K7ERS5 55 aa6.55□□□□□ -1.36
LSM1-204ENST00000522515 KRTAP10-7P60409 375 aaPredicted RBP6.52□□□□□ -1.36
LSM1-204ENST00000522515 MACF1Q9UPN3 7388 aaKnown RBP6.51□□□□□ -1.37
LSM1-204ENST00000522515 C10orf95Q9H7T3 257 aa6.48□□□□□ -1.37
LSM1-204ENST00000522515 KRTAP10-12P60413 245 aa6.46□□□□□ -1.38
LSM1-204ENST00000522515 KMT2DO14686 5537 aa6.4□□□□□ -1.39
LSM1-204ENST00000522515 KRTAP4-8A0A0G2JLE6 195 aa6.39□□□□□ -1.39
LSM1-204ENST00000522515 KRTAP4-8Q9BYQ9 185 aa6.39□□□□□ -1.39
LSM1-204ENST00000522515 SYNE2Q8WXH0 6885 aaKnown RBP6.36□□□□□ -1.39
LSM1-204ENST00000522515 KRTAP9-7A8MTY7 169 aa6.34□□□□□ -1.39
LSM1-204ENST00000522515 TNP1P09430 55 aa6.34□□□□□ -1.39
LSM1-204ENST00000522515 KRTAP8-1Q8IUC2 63 aa6.3□□□□□ -1.4
LSM1-204ENST00000522515 KRTAP6-3Q3LI67 103 aa6.29□□□□□ -1.4
LSM1-204ENST00000522515 ROMO1P60602 79 aa6.23□□□□□ -1.41
LSM1-204ENST00000522515 KRTAP25-1Q3LHN0 102 aa6.23□□□□□ -1.41
LSM1-204ENST00000522515 KRTAP5-9P26371 169 aa6.22□□□□□ -1.41
LSM1-204ENST00000522515 LCE3AQ5TA76 89 aa6.18□□□□□ -1.42
LSM1-204ENST00000522515 SPRR2FQ96RM1 72 aa6.17□□□□□ -1.42
LSM1-204ENST00000522515 PRAC1Q96KF2 57 aa6.1□□□□□ -1.43
LSM1-204ENST00000522515 KRTAP19-7Q3SYF9 63 aa6.08□□□□□ -1.44
LSM1-204ENST00000522515 MUC12Q9UKN1 5478 aa6.06□□□□□ -1.44
LSM1-204ENST00000522515 KRTAP19-5Q3LI72 72 aa6.06□□□□□ -1.44
LSM1-204ENST00000522515 KRTAP23-1A1A580 65 aa6□□□□□ -1.45
LSM1-204ENST00000522515 MT1EP04732 61 aa6□□□□□ -1.45
LSM1-204ENST00000522515 MDN1Q9NU22 5596 aa5.97□□□□□ -1.45
LSM1-204ENST00000522515 LCE1AQ5T7P2 110 aa5.95□□□□□ -1.46
LSM1-204ENST00000522515 SPRR2EP22531 72 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms