RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 NDUFC1O43677 76 aa7.38□□□□□ -1.23
LSM1-203ENST00000520755 KRTAP3-3Q9BYR6 98 aa7.36□□□□□ -1.23
LSM1-203ENST00000520755 KRTAP9-8Q9BYQ0 159 aa7.35□□□□□ -1.23
LSM1-203ENST00000520755 KRTAP9-2Q9BYQ4 174 aa7.31□□□□□ -1.24
LSM1-203ENST00000520755 MT2AP02795 61 aa7.29□□□□□ -1.24
LSM1-203ENST00000520755 ACYP2P14621 99 aa7.28□□□□□ -1.24
LSM1-203ENST00000520755 LCE2DQ5TA82 110 aaPredicted RBP7.27□□□□□ -1.25
LSM1-203ENST00000520755 MT1FP04733 61 aa7.25□□□□□ -1.25
LSM1-203ENST00000520755 PCP4P48539 62 aa7.24□□□□□ -1.25
LSM1-203ENST00000520755 KRTAP10-10P60014 251 aa7.24□□□□□ -1.25
LSM1-203ENST00000520755 CSAG1Q6PB30 78 aa7.23□□□□□ -1.25
LSM1-203ENST00000520755 TMEM258P61165 79 aa7.19□□□□□ -1.26
LSM1-203ENST00000520755 COA5Q86WW8 74 aa7.19□□□□□ -1.26
LSM1-203ENST00000520755 ATP5EP56381 51 aaPredicted RBP7.17□□□□□ -1.26
LSM1-203ENST00000520755 CHKB-CPT1BH3BT56 60 aa7.14□□□□□ -1.27
LSM1-203ENST00000520755 KRTAP9-3Q9BYQ3 159 aa7.1□□□□□ -1.27
LSM1-203ENST00000520755 H0YAA0 97 aa7.08□□□□□ -1.28
LSM1-203ENST00000520755 SPTSSBQ8NFR3 76 aa7.06□□□□□ -1.28
LSM1-203ENST00000520755 ADM2Q7Z4H4 148 aa7.02□□□□□ -1.29
LSM1-203ENST00000520755 LCE2BO14633 110 aa7.01□□□□□ -1.29
LSM1-203ENST00000520755 KRTAP3-2Q9BYR7 98 aa7.01□□□□□ -1.29
LSM1-203ENST00000520755 FSIP2Q5CZC0 6907 aa7.01□□□□□ -1.29
LSM1-203ENST00000520755 USH2AO75445 5202 aa6.99□□□□□ -1.29
LSM1-203ENST00000520755 P0C880 135 aa6.97□□□□□ -1.29
LSM1-203ENST00000520755 CRCT1Q9UGL9 99 aa6.96□□□□□ -1.3
LSM1-203ENST00000520755 KRTAP9-6A0A140TA67 174 aa6.95□□□□□ -1.3
LSM1-203ENST00000520755 SERP1Q9Y6X1 66 aa6.95□□□□□ -1.3
LSM1-203ENST00000520755 KRTAP19-1Q8IUB9 90 aa6.92□□□□□ -1.3
LSM1-203ENST00000520755 SSPOA2VEC9 5147 aa6.88□□□□□ -1.31
LSM1-203ENST00000520755 SPRR2GQ9BYE4 73 aa6.87□□□□□ -1.31
LSM1-203ENST00000520755 CRIPTQ9P021 101 aa6.87□□□□□ -1.31
LSM1-203ENST00000520755 LINC01558Q9Y6Z2 57 aa6.79□□□□□ -1.32
LSM1-203ENST00000520755 M0QZ58 72 aa6.77□□□□□ -1.33
LSM1-203ENST00000520755 A0A1B0GU69 56 aa6.76□□□□□ -1.33
LSM1-203ENST00000520755 SEC61GP60059 68 aa6.76□□□□□ -1.33
LSM1-203ENST00000520755 RPS28P62857 69 aaKnown RBP6.76□□□□□ -1.33
LSM1-203ENST00000520755 KRTAP19-8Q3LI54 63 aa6.76□□□□□ -1.33
LSM1-203ENST00000520755 Q5VV11 94 aa6.76□□□□□ -1.33
LSM1-203ENST00000520755 R4GN34 69 aa6.76□□□□□ -1.33
LSM1-203ENST00000520755 KRTAP13-4Q3LI77 160 aa6.75□□□□□ -1.33
LSM1-203ENST00000520755 MT1BP07438 61 aa6.73□□□□□ -1.33
LSM1-203ENST00000520755 SMIM26A0A096LP01 95 aa6.7□□□□□ -1.34
LSM1-203ENST00000520755 KRTAP19-6Q3LI70 58 aa6.69□□□□□ -1.34
LSM1-203ENST00000520755 Q1T7F1 81 aa6.68□□□□□ -1.34
LSM1-203ENST00000520755 A0A1B0GU33 70 aa6.67□□□□□ -1.34
LSM1-203ENST00000520755 PRR15LQ9BU68 103 aa6.66□□□□□ -1.34
LSM1-203ENST00000520755 FCGBPQ9Y6R7 5405 aaPredicted RBP6.64□□□□□ -1.35
LSM1-203ENST00000520755 LINC01554Q52M75 96 aa6.63□□□□□ -1.35
LSM1-203ENST00000520755 SPATA8Q6RVD6 105 aa6.63□□□□□ -1.35
LSM1-203ENST00000520755 V9GYY9 64 aa6.63□□□□□ -1.35
LSM1-203ENST00000520755 PSPHP1O15172 72 aa6.59□□□□□ -1.35
LSM1-203ENST00000520755 PLAC4Q8WY50 150 aa6.55□□□□□ -1.36
LSM1-203ENST00000520755 A6NN06 94 aa6.54□□□□□ -1.36
LSM1-203ENST00000520755 A0A0D9SG42 100 aa6.51□□□□□ -1.37
LSM1-203ENST00000520755 A8MU10 97 aa6.5□□□□□ -1.37
LSM1-203ENST00000520755 KRTAP10-5P60370 271 aa6.5□□□□□ -1.37
LSM1-203ENST00000520755 UQCR11O14957 56 aa6.48□□□□□ -1.37
LSM1-203ENST00000520755 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.47□□□□□ -1.37
LSM1-203ENST00000520755 KRTAP12-1P59990 96 aa6.44□□□□□ -1.38
LSM1-203ENST00000520755 MT1XP80297 61 aa6.42□□□□□ -1.38
LSM1-203ENST00000520755 KRTAP12-2P59991 146 aa6.41□□□□□ -1.38
LSM1-203ENST00000520755 MIR22HGQ0VDD5 57 aa6.4□□□□□ -1.38
LSM1-203ENST00000520755 PRO2289Q9P1D8 64 aa6.4□□□□□ -1.38
LSM1-203ENST00000520755 SPINT4Q6UDR6 99 aa6.37□□□□□ -1.39
LSM1-203ENST00000520755 A6NED7 52 aa6.36□□□□□ -1.39
LSM1-203ENST00000520755 MACF1Q9UPN3 7388 aaKnown RBP6.35□□□□□ -1.39
LSM1-203ENST00000520755 KRTAP9-7A8MTY7 169 aa6.29□□□□□ -1.4
LSM1-203ENST00000520755 CAMK2N1Q7Z7J9 78 aa6.28□□□□□ -1.4
LSM1-203ENST00000520755 SYNE2Q8WXH0 6885 aaKnown RBP6.23□□□□□ -1.41
LSM1-203ENST00000520755 CDC42SE1Q9NRR8 79 aa6.22□□□□□ -1.41
LSM1-203ENST00000520755 KRTAP10-7P60409 375 aaPredicted RBP6.14□□□□□ -1.43
LSM1-203ENST00000520755 KRTAP6-3Q3LI67 103 aa6.14□□□□□ -1.43
LSM1-203ENST00000520755 KMT2DO14686 5537 aa6.14□□□□□ -1.43
LSM1-203ENST00000520755 C10orf95Q9H7T3 257 aa6.12□□□□□ -1.43
LSM1-203ENST00000520755 K7ERS5 55 aa6.1□□□□□ -1.43
LSM1-203ENST00000520755 KRTAP10-12P60413 245 aa6.08□□□□□ -1.44
LSM1-203ENST00000520755 KRTAP4-8A0A0G2JLE6 195 aa6.03□□□□□ -1.44
LSM1-203ENST00000520755 BRK1Q8WUW1 75 aa6.03□□□□□ -1.44
LSM1-203ENST00000520755 KRTAP4-8Q9BYQ9 185 aa6.03□□□□□ -1.44
LSM1-203ENST00000520755 KRTAP8-1Q8IUC2 63 aa6.02□□□□□ -1.45
LSM1-203ENST00000520755 KRTAP5-9P26371 169 aa5.98□□□□□ -1.45
LSM1-203ENST00000520755 MUC12Q9UKN1 5478 aa5.97□□□□□ -1.45
LSM1-203ENST00000520755 SPRR2FQ96RM1 72 aa5.94□□□□□ -1.46
LSM1-203ENST00000520755 TNP1P09430 55 aa5.92□□□□□ -1.46
LSM1-203ENST00000520755 ROMO1P60602 79 aa5.86□□□□□ -1.47
LSM1-203ENST00000520755 KRTAP25-1Q3LHN0 102 aa5.84□□□□□ -1.47
LSM1-203ENST00000520755 MDN1Q9NU22 5596 aa5.82□□□□□ -1.48
LSM1-203ENST00000520755 NEBP20929 6669 aa5.81□□□□□ -1.48
LSM1-203ENST00000520755 LCE3AQ5TA76 89 aa5.81□□□□□ -1.48
LSM1-203ENST00000520755 SPRR2EP22531 72 aa5.77□□□□□ -1.49
LSM1-203ENST00000520755 SPRR2BP35325 72 aa5.77□□□□□ -1.49
LSM1-203ENST00000520755 SPRR2AP35326 72 aa5.77□□□□□ -1.49
LSM1-203ENST00000520755 KRTAP19-7Q3SYF9 63 aa5.74□□□□□ -1.49
LSM1-203ENST00000520755 LCE1AQ5T7P2 110 aa5.72□□□□□ -1.49
LSM1-203ENST00000520755 PRO0628Q9UI54 55 aa5.71□□□□□ -1.5
LSM1-203ENST00000520755 KRTAP19-5Q3LI72 72 aa5.69□□□□□ -1.5
LSM1-203ENST00000520755 PMAIP1Q13794 54 aa5.66□□□□□ -1.5
LSM1-203ENST00000520755 KRTAP23-1A1A580 65 aa5.64□□□□□ -1.51
LSM1-203ENST00000520755 MT1EP04732 61 aa5.64□□□□□ -1.51
LSM1-203ENST00000520755 SPRR2DP22532 72 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 197.7 ms