RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 S4R3F8 94 aa10.19□□□□□ -0.78
LSM6-207ENST00000515311 NDUFC1O43677 76 aa10.18□□□□□ -0.78
LSM6-207ENST00000515311 SPANXA2-OT1Q8N9U9 137 aa10.18□□□□□ -0.78
LSM6-207ENST00000515311 KRTAP10-6P60371 365 aaPredicted RBP10.15□□□□□ -0.78
LSM6-207ENST00000515311 LCA10Q71F78 164 aa10.13□□□□□ -0.79
LSM6-207ENST00000515311 CCDC179H3BU77 68 aa10.12□□□□□ -0.79
LSM6-207ENST00000515311 CYSTM1Q9H1C7 97 aa10.11□□□□□ -0.79
LSM6-207ENST00000515311 H7BZZ5 65 aa10.1□□□□□ -0.79
LSM6-207ENST00000515311 ACYP2P14621 99 aa10.06□□□□□ -0.8
LSM6-207ENST00000515311 CSAG1Q6PB30 78 aa10.04□□□□□ -0.8
LSM6-207ENST00000515311 KRTAP9-8Q9BYQ0 159 aa9.99□□□□□ -0.81
LSM6-207ENST00000515311 KRTAP4-8Q9BYQ9 185 aa9.99□□□□□ -0.81
LSM6-207ENST00000515311 MT2AP02795 61 aa9.91□□□□□ -0.82
LSM6-207ENST00000515311 CHKB-CPT1BH3BT56 60 aa9.87□□□□□ -0.83
LSM6-207ENST00000515311 ATP5EP56381 51 aaPredicted RBP9.85□□□□□ -0.83
LSM6-207ENST00000515311 SPTSSBQ8NFR3 76 aa9.84□□□□□ -0.83
LSM6-207ENST00000515311 MT1FP04733 61 aa9.83□□□□□ -0.84
LSM6-207ENST00000515311 TMEM258P61165 79 aa9.82□□□□□ -0.84
LSM6-207ENST00000515311 COA5Q86WW8 74 aa9.82□□□□□ -0.84
LSM6-207ENST00000515311 KRTAP9-2Q9BYQ4 174 aa9.81□□□□□ -0.84
LSM6-207ENST00000515311 KRTAP10-10P60014 251 aa9.8□□□□□ -0.84
LSM6-207ENST00000515311 H0YAA0 97 aa9.79□□□□□ -0.84
LSM6-207ENST00000515311 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.78□□□□□ -0.84
LSM6-207ENST00000515311 PCP4P48539 62 aa9.77□□□□□ -0.85
LSM6-207ENST00000515311 KRTAP9-6A0A140TA67 174 aa9.76□□□□□ -0.85
LSM6-207ENST00000515311 H3BS24 57 aa9.67□□□□□ -0.86
LSM6-207ENST00000515311 KRTAP4-12Q9BQ66 201 aa9.67□□□□□ -0.86
LSM6-207ENST00000515311 ADM2Q7Z4H4 148 aa9.66□□□□□ -0.86
LSM6-207ENST00000515311 KRTAP9-3Q9BYQ3 159 aa9.65□□□□□ -0.86
LSM6-207ENST00000515311 KRTAP19-1Q8IUB9 90 aa9.6□□□□□ -0.87
LSM6-207ENST00000515311 LCE3BQ5TA77 95 aa9.58□□□□□ -0.88
LSM6-207ENST00000515311 CRIPTQ9P021 101 aa9.57□□□□□ -0.88
LSM6-207ENST00000515311 P0C880 135 aa9.52□□□□□ -0.89
LSM6-207ENST00000515311 SERP1Q9Y6X1 66 aa9.5□□□□□ -0.89
LSM6-207ENST00000515311 SPRR2GQ9BYE4 73 aa9.48□□□□□ -0.89
LSM6-207ENST00000515311 SEC61GP60059 68 aa9.42□□□□□ -0.9
LSM6-207ENST00000515311 R4GN34 69 aa9.37□□□□□ -0.91
LSM6-207ENST00000515311 KRTAP9-9Q9BYP9 154 aa9.33□□□□□ -0.92
LSM6-207ENST00000515311 KRTAP9-4Q9BYQ2 154 aa9.33□□□□□ -0.92
LSM6-207ENST00000515311 A0A1B0GU69 56 aa9.31□□□□□ -0.92
LSM6-207ENST00000515311 M0QZ58 72 aa9.31□□□□□ -0.92
LSM6-207ENST00000515311 KRTAP19-8Q3LI54 63 aa9.31□□□□□ -0.92
LSM6-207ENST00000515311 LINC01558Q9Y6Z2 57 aa9.28□□□□□ -0.92
LSM6-207ENST00000515311 USH2AO75445 5202 aa9.26□□□□□ -0.93
LSM6-207ENST00000515311 RPS28P62857 69 aaKnown RBP9.25□□□□□ -0.93
LSM6-207ENST00000515311 Q5VV11 94 aa9.24□□□□□ -0.93
LSM6-207ENST00000515311 PRR15LQ9BU68 103 aa9.23□□□□□ -0.93
LSM6-207ENST00000515311 A0A1B0GU33 70 aa9.19□□□□□ -0.94
LSM6-207ENST00000515311 MT1BP07438 61 aa9.19□□□□□ -0.94
LSM6-207ENST00000515311 FSIP2Q5CZC0 6907 aa9.19□□□□□ -0.94
LSM6-207ENST00000515311 SMIM26A0A096LP01 95 aa9.18□□□□□ -0.94
LSM6-207ENST00000515311 CRCT1Q9UGL9 99 aa9.16□□□□□ -0.94
LSM6-207ENST00000515311 V9GYY9 64 aa9.16□□□□□ -0.94
LSM6-207ENST00000515311 KRTAP13-4Q3LI77 160 aa9.15□□□□□ -0.94
LSM6-207ENST00000515311 Q1T7F1 81 aa9.13□□□□□ -0.95
LSM6-207ENST00000515311 LINC01554Q52M75 96 aa9.13□□□□□ -0.95
LSM6-207ENST00000515311 KRTAP4-8A0A0G2JLE6 195 aa9.12□□□□□ -0.95
LSM6-207ENST00000515311 KRTAP19-4Q3LI73 84 aa9.09□□□□□ -0.95
LSM6-207ENST00000515311 SSPOA2VEC9 5147 aa9.05□□□□□ -0.96
LSM6-207ENST00000515311 KRTAP19-6Q3LI70 58 aa9.04□□□□□ -0.96
LSM6-207ENST00000515311 A6NN06 94 aa9.03□□□□□ -0.96
LSM6-207ENST00000515311 SPATA8Q6RVD6 105 aa9.03□□□□□ -0.96
LSM6-207ENST00000515311 PLAC4Q8WY50 150 aa9.02□□□□□ -0.97
LSM6-207ENST00000515311 PSPHP1O15172 72 aa8.96□□□□□ -0.98
LSM6-207ENST00000515311 UQCR11O14957 56 aa8.94□□□□□ -0.98
LSM6-207ENST00000515311 LCE1DQ5T752 114 aa8.94□□□□□ -0.98
LSM6-207ENST00000515311 LCE4AQ5TA78 99 aa8.94□□□□□ -0.98
LSM6-207ENST00000515311 A0A0D9SG42 100 aa8.92□□□□□ -0.98
LSM6-207ENST00000515311 KRTAP10-5P60370 271 aa8.86□□□□□ -0.99
LSM6-207ENST00000515311 A8MU10 97 aa8.83□□□□□ -1
LSM6-207ENST00000515311 PRO2289Q9P1D8 64 aa8.8□□□□□ -1
LSM6-207ENST00000515311 KRTAP9-7A8MTY7 169 aa8.79□□□□□ -1
LSM6-207ENST00000515311 KRTAP12-1P59990 96 aa8.79□□□□□ -1
LSM6-207ENST00000515311 MT1XP80297 61 aa8.78□□□□□ -1
LSM6-207ENST00000515311 MIR22HGQ0VDD5 57 aa8.78□□□□□ -1
LSM6-207ENST00000515311 KRTAP4-7Q9BYR0 210 aa8.78□□□□□ -1
LSM6-207ENST00000515311 FCGBPQ9Y6R7 5405 aaPredicted RBP8.77□□□□□ -1
LSM6-207ENST00000515311 SPINT4Q6UDR6 99 aa8.75□□□□□ -1.01
LSM6-207ENST00000515311 KRTAP12-2P59991 146 aa8.73□□□□□ -1.01
LSM6-207ENST00000515311 A6NED7 52 aa8.71□□□□□ -1.02
LSM6-207ENST00000515311 CAMK2N1Q7Z7J9 78 aa8.71□□□□□ -1.02
LSM6-207ENST00000515311 KRTAP4-9Q9BYQ8 210 aa8.65□□□□□ -1.02
LSM6-207ENST00000515311 K7ERS5 55 aa8.51□□□□□ -1.05
LSM6-207ENST00000515311 CDC42SE1Q9NRR8 79 aa8.49□□□□□ -1.05
LSM6-207ENST00000515311 LCE5AQ5TCM9 118 aa8.42□□□□□ -1.06
LSM6-207ENST00000515311 MACF1Q9UPN3 7388 aaKnown RBP8.41□□□□□ -1.06
LSM6-207ENST00000515311 KRTAP4-2Q9BYR5 136 aa8.39□□□□□ -1.07
LSM6-207ENST00000515311 KRTAP4-11Q9BYQ6 195 aa8.38□□□□□ -1.07
LSM6-207ENST00000515311 KRTAP10-7P60409 375 aaPredicted RBP8.37□□□□□ -1.07
LSM6-207ENST00000515311 KRTAP10-12P60413 245 aa8.36□□□□□ -1.07
LSM6-207ENST00000515311 C10orf95Q9H7T3 257 aa8.34□□□□□ -1.07
LSM6-207ENST00000515311 TNP1P09430 55 aa8.21□□□□□ -1.1
LSM6-207ENST00000515311 BRK1Q8WUW1 75 aa8.21□□□□□ -1.1
LSM6-207ENST00000515311 SYNE2Q8WXH0 6885 aaKnown RBP8.17□□□□□ -1.1
LSM6-207ENST00000515311 KRTAP6-3Q3LI67 103 aa8.17□□□□□ -1.1
LSM6-207ENST00000515311 KRTAP8-1Q8IUC2 63 aa8.14□□□□□ -1.11
LSM6-207ENST00000515311 KMT2DO14686 5537 aa8.11□□□□□ -1.11
LSM6-207ENST00000515311 KRTAP25-1Q3LHN0 102 aa8.09□□□□□ -1.11
LSM6-207ENST00000515311 KRTAP5-9P26371 169 aa8.07□□□□□ -1.12
LSM6-207ENST00000515311 ROMO1P60602 79 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms