RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 XP32Q5T750 250 aa9.31□□□□□ -0.92
CCHCR1-228ENST00000509552 DMBT1Q9UGM3 2413 aaPredicted RBP9.26□□□□□ -0.93
CCHCR1-228ENST00000509552 RYR1P21817 5038 aa9.25□□□□□ -0.93
CCHCR1-228ENST00000509552 KRTAP3-3Q9BYR6 98 aa9.18□□□□□ -0.94
CCHCR1-228ENST00000509552 RYR3Q15413 4870 aa9.17□□□□□ -0.94
CCHCR1-228ENST00000509552 S4R3F8 94 aa9.17□□□□□ -0.94
CCHCR1-228ENST00000509552 CSAG1Q6PB30 78 aa9.16□□□□□ -0.94
CCHCR1-228ENST00000509552 K7ERS5 55 aa9.15□□□□□ -0.94
CCHCR1-228ENST00000509552 MT1HL1P0DM35 61 aa9.15□□□□□ -0.94
CCHCR1-228ENST00000509552 KRTAP17-1Q9BYP8 105 aa9.15□□□□□ -0.94
CCHCR1-228ENST00000509552 MYCBP2O75592 4640 aa9.14□□□□□ -0.95
CCHCR1-228ENST00000509552 LINC01554Q52M75 96 aa9.11□□□□□ -0.95
CCHCR1-228ENST00000509552 KRTAP10-6P60371 365 aaPredicted RBP9.09□□□□□ -0.95
CCHCR1-228ENST00000509552 KIAA1109Q2LD37 5005 aa9.07□□□□□ -0.96
CCHCR1-228ENST00000509552 KRTAP3-2Q9BYR7 98 aa9.03□□□□□ -0.96
CCHCR1-228ENST00000509552 TPRXLQ17RH7 258 aa9□□□□□ -0.97
CCHCR1-228ENST00000509552 KRTAP13-4Q3LI77 160 aa8.97□□□□□ -0.97
CCHCR1-228ENST00000509552 KRTAP25-1Q3LHN0 102 aa8.94□□□□□ -0.98
CCHCR1-228ENST00000509552 A0A0D9SG42 100 aa8.94□□□□□ -0.98
CCHCR1-228ENST00000509552 P0C880 135 aa8.92□□□□□ -0.98
CCHCR1-228ENST00000509552 ROMO1P60602 79 aa8.88□□□□□ -0.99
CCHCR1-228ENST00000509552 LRP2P98164 4655 aa8.85□□□□□ -0.99
CCHCR1-228ENST00000509552 EPPK1P58107 5090 aaKnown RBP8.84□□□□□ -0.99
CCHCR1-228ENST00000509552 LPAP08519 4548 aa8.84□□□□□ -0.99
CCHCR1-228ENST00000509552 CRIPTQ9P021 101 aa8.79□□□□□ -1
CCHCR1-228ENST00000509552 KRTAP4-5Q9BYR2 181 aa8.73□□□□□ -1.01
CCHCR1-228ENST00000509552 ABCA13Q86UQ4 5058 aa8.73□□□□□ -1.01
CCHCR1-228ENST00000509552 M0QZ58 72 aa8.71□□□□□ -1.01
CCHCR1-228ENST00000509552 KRTAP12-2P59991 146 aa8.7□□□□□ -1.02
CCHCR1-228ENST00000509552 SEC61BP60468 96 aaKnown RBP8.7□□□□□ -1.02
CCHCR1-228ENST00000509552 SPINT4Q6UDR6 99 aa8.67□□□□□ -1.02
CCHCR1-228ENST00000509552 KRTAP12-1P59990 96 aa8.65□□□□□ -1.02
CCHCR1-228ENST00000509552 J3QL48 77 aa8.59□□□□□ -1.03
CCHCR1-228ENST00000509552 R4GN34 69 aa8.52□□□□□ -1.05
CCHCR1-228ENST00000509552 MUC17Q685J3 4493 aa8.51□□□□□ -1.05
CCHCR1-228ENST00000509552 C10orf95Q9H7T3 257 aa8.49□□□□□ -1.05
CCHCR1-228ENST00000509552 KRTAP4-1Q9BYQ7 146 aa8.47□□□□□ -1.05
CCHCR1-228ENST00000509552 HERC2O95714 4834 aa8.4□□□□□ -1.07
CCHCR1-228ENST00000509552 LORP23490 312 aaPredicted RBP8.33□□□□□ -1.08
CCHCR1-228ENST00000509552 KRTAP19-2Q3LHN2 52 aa8.32□□□□□ -1.08
CCHCR1-228ENST00000509552 BIRC6Q9NR09 4857 aa8.17□□□□□ -1.1
CCHCR1-228ENST00000509552 H3BS24 57 aa8.15□□□□□ -1.1
CCHCR1-228ENST00000509552 FLGP20930 4061 aaPredicted RBP8.13□□□□□ -1.11
CCHCR1-228ENST00000509552 KRTAP15-1Q3LI76 137 aa8.11□□□□□ -1.11
CCHCR1-228ENST00000509552 MUC2Q02817 5179 aa8.1□□□□□ -1.11
CCHCR1-228ENST00000509552 CAMK2N1Q7Z7J9 78 aa8.08□□□□□ -1.12
CCHCR1-228ENST00000509552 HMCN2Q8NDA2 5059 aa7.96□□□□□ -1.14
CCHCR1-228ENST00000509552 HERC1Q15751 4861 aa7.95□□□□□ -1.14
CCHCR1-228ENST00000509552 PP632Q6XCG6 107 aa7.92□□□□□ -1.14
CCHCR1-228ENST00000509552 PCLOQ9Y6V0 5065 aa7.91□□□□□ -1.14
CCHCR1-228ENST00000509552 NDUFAF8A1L188 74 aa7.88□□□□□ -1.15
CCHCR1-228ENST00000509552 LCE2CQ5TA81 110 aa7.85□□□□□ -1.15
CCHCR1-228ENST00000509552 PLAC4Q8WY50 150 aa7.85□□□□□ -1.15
CCHCR1-228ENST00000509552 TNP1P09430 55 aa7.78□□□□□ -1.16
CCHCR1-228ENST00000509552 M0R2T5 61 aa7.75□□□□□ -1.17
CCHCR1-228ENST00000509552 SPRR2GQ9BYE4 73 aa7.72□□□□□ -1.17
CCHCR1-228ENST00000509552 FAT4Q6V0I7 4981 aa7.71□□□□□ -1.17
CCHCR1-228ENST00000509552 KRTAP23-1A1A580 65 aa7.68□□□□□ -1.18
CCHCR1-228ENST00000509552 MT1HP80294 61 aa7.66□□□□□ -1.18
CCHCR1-228ENST00000509552 KRTAP19-1Q8IUB9 90 aa7.65□□□□□ -1.18
CCHCR1-228ENST00000509552 RNF213Q63HN8 5207 aa7.63□□□□□ -1.19
CCHCR1-228ENST00000509552 UBR4Q5T4S7 5183 aa7.57□□□□□ -1.2
CCHCR1-228ENST00000509552 KRTAP10-10P60014 251 aa7.56□□□□□ -1.2
CCHCR1-228ENST00000509552 MT2AP02795 61 aa7.53□□□□□ -1.2
CCHCR1-228ENST00000509552 MT1FP04733 61 aa7.51□□□□□ -1.21
CCHCR1-228ENST00000509552 LUZP6Q538Z0 58 aa7.51□□□□□ -1.21
CCHCR1-228ENST00000509552 KRTAP9-8Q9BYQ0 159 aa7.47□□□□□ -1.21
CCHCR1-228ENST00000509552 KRTAP19-8Q3LI54 63 aa7.38□□□□□ -1.23
CCHCR1-228ENST00000509552 LCE3AQ5TA76 89 aa7.32□□□□□ -1.24
CCHCR1-228ENST00000509552 SPRR5A0A1B0GTR4 108 aa7.29□□□□□ -1.24
CCHCR1-228ENST00000509552 MT1BP07438 61 aa7.26□□□□□ -1.25
CCHCR1-228ENST00000509552 KRTAP10-5P60370 271 aa7.21□□□□□ -1.26
CCHCR1-228ENST00000509552 MT1XP80297 61 aa7.19□□□□□ -1.26
CCHCR1-228ENST00000509552 KRTAP9-3Q9BYQ3 159 aa7.16□□□□□ -1.26
CCHCR1-228ENST00000509552 KRTAP8-1Q8IUC2 63 aa7.15□□□□□ -1.26
CCHCR1-228ENST00000509552 KRTAP10-12P60413 245 aa7.09□□□□□ -1.28
CCHCR1-228ENST00000509552 A0A0A0MQY5 61 aa7.07□□□□□ -1.28
CCHCR1-228ENST00000509552 PRO2289Q9P1D8 64 aa7.04□□□□□ -1.28
CCHCR1-228ENST00000509552 KRTAP12-3P60328 96 aa7□□□□□ -1.29
CCHCR1-228ENST00000509552 KRTAP10-7P60409 375 aaPredicted RBP6.99□□□□□ -1.29
CCHCR1-228ENST00000509552 LCE2BO14633 110 aa6.87□□□□□ -1.31
CCHCR1-228ENST00000509552 LCE2AQ5TA79 106 aaPredicted RBP6.79□□□□□ -1.32
CCHCR1-228ENST00000509552 KRTAP19-5Q3LI72 72 aa6.7□□□□□ -1.34
CCHCR1-228ENST00000509552 USH2AO75445 5202 aa6.67□□□□□ -1.34
CCHCR1-228ENST00000509552 LCE3CQ5T5A8 94 aa6.58□□□□□ -1.36
CCHCR1-228ENST00000509552 KRTAP4-8A0A0G2JLE6 195 aa6.54□□□□□ -1.36
CCHCR1-228ENST00000509552 KRTAP4-8Q9BYQ9 185 aa6.54□□□□□ -1.36
CCHCR1-228ENST00000509552 KMT2DO14686 5537 aa6.54□□□□□ -1.36
CCHCR1-228ENST00000509552 INE1O15225 51 aa6.42□□□□□ -1.38
CCHCR1-228ENST00000509552 KRTAP19-7Q3SYF9 63 aa6.41□□□□□ -1.38
CCHCR1-228ENST00000509552 KRTAP19-4Q3LI73 84 aa6.33□□□□□ -1.4
CCHCR1-228ENST00000509552 SSPOA2VEC9 5147 aa6.3□□□□□ -1.4
CCHCR1-228ENST00000509552 KRTAP9-6A8MVA2 160 aa6.27□□□□□ -1.41
CCHCR1-228ENST00000509552 MT1EP04732 61 aa6.25□□□□□ -1.41
CCHCR1-228ENST00000509552 MT1LQ93083 61 aa6.24□□□□□ -1.41
CCHCR1-228ENST00000509552 KRTAP19-6Q3LI70 58 aa6.22□□□□□ -1.41
CCHCR1-228ENST00000509552 KRTAP4-7Q9BYR0 210 aa6.22□□□□□ -1.41
CCHCR1-228ENST00000509552 KRTAP2-3P0C7H8 128 aa6.08□□□□□ -1.44
CCHCR1-228ENST00000509552 KRTAP2-4Q9BYR9 128 aa6.08□□□□□ -1.44
CCHCR1-228ENST00000509552 KRTAP2-1Q9BYU5 128 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 231 ms