RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 LINC01546A6NGU7 62 aa-0.61□□□□□ -2.51
HMGB1P28-201ENST00000507778 H3BUT2 72 aa-0.61□□□□□ -2.51
HMGB1P28-201ENST00000507778 DEFB4AO15263 64 aa-0.61□□□□□ -2.51
HMGB1P28-201ENST00000507778 MRPL33O75394 65 aaKnown RBP-0.61□□□□□ -2.51
HMGB1P28-201ENST00000507778 S100A8P05109 93 aa-0.61□□□□□ -2.51
HMGB1P28-201ENST00000507778 MT1HL1P0DM35 61 aa-0.61□□□□□ -2.51
HMGB1P28-201ENST00000507778 HMGA1P17096 107 aaKnown RBP-0.61□□□□□ -2.51
HMGB1P28-201ENST00000507778 DNMBPQ6XZF7 1577 aa-0.62□□□□□ -2.51
HMGB1P28-201ENST00000507778 RB1CC1Q8TDY2 1594 aa-0.62□□□□□ -2.51
HMGB1P28-201ENST00000507778 DMXL2Q8TDJ6 3036 aa-0.62□□□□□ -2.51
HMGB1P28-201ENST00000507778 LMO7Q8WWI1 1683 aa-0.62□□□□□ -2.51
HMGB1P28-201ENST00000507778 UACAQ9BZF9 1416 aa-0.62□□□□□ -2.51
HMGB1P28-201ENST00000507778 CLASP1Q7Z460 1538 aa-0.62□□□□□ -2.51
HMGB1P28-201ENST00000507778 H3BVH4 76 aa-0.62□□□□□ -2.51
HMGB1P28-201ENST00000507778 M0QY20 66 aa-0.62□□□□□ -2.51
HMGB1P28-201ENST00000507778 MROH2AA6NES4 1674 aa-0.62□□□□□ -2.51
HMGB1P28-201ENST00000507778 ATMQ13315 3056 aa-0.63□□□□□ -2.51
HMGB1P28-201ENST00000507778 RRBP1Q9P2E9 1410 aaKnown RBP-0.63□□□□□ -2.51
HMGB1P28-201ENST00000507778 ETDCA0A1B0GVM5 59 aa-0.63□□□□□ -2.51
HMGB1P28-201ENST00000507778 KANTRA0A1W2PQU2 76 aa-0.63□□□□□ -2.51
HMGB1P28-201ENST00000507778 PYY3Q5JQD4 70 aa-0.63□□□□□ -2.51
HMGB1P28-201ENST00000507778 MT1MQ8N339 61 aa-0.63□□□□□ -2.51
HMGB1P28-201ENST00000507778 NOP10Q9NPE3 64 aaKnown RBP-0.63□□□□□ -2.51
HMGB1P28-201ENST00000507778 V9GYS6 101 aa-0.63□□□□□ -2.51
HMGB1P28-201ENST00000507778 MED14O60244 1454 aa-0.63□□□□□ -2.51
HMGB1P28-201ENST00000507778 TLN1Q9Y490 2541 aaKnown RBP-0.63□□□□□ -2.51
HMGB1P28-201ENST00000507778 CRYBG3Q68DQ2 2970 aa-0.63□□□□□ -2.51
HMGB1P28-201ENST00000507778 ABCC1P33527 1531 aa-0.64□□□□□ -2.51
HMGB1P28-201ENST00000507778 EFCAB6Q5THR3 1501 aa-0.64□□□□□ -2.51
HMGB1P28-201ENST00000507778 CCDC180Q9P1Z9 1646 aa-0.64□□□□□ -2.51
HMGB1P28-201ENST00000507778 A8MTW9 85 aa-0.64□□□□□ -2.51
HMGB1P28-201ENST00000507778 H3BUA1 57 aa-0.64□□□□□ -2.51
HMGB1P28-201ENST00000507778 MT2AP02795 61 aa-0.64□□□□□ -2.51
HMGB1P28-201ENST00000507778 BVES-AS1Q5T3Y7 98 aa-0.64□□□□□ -2.51
HMGB1P28-201ENST00000507778 ST20Q9HBF5 79 aa-0.64□□□□□ -2.51
HMGB1P28-201ENST00000507778 KAAG1Q9UBP8 84 aa-0.64□□□□□ -2.51
HMGB1P28-201ENST00000507778 HILPDAQ9Y5L2 63 aa-0.64□□□□□ -2.51
HMGB1P28-201ENST00000507778 ABCA6Q8N139 1617 aa-0.64□□□□□ -2.51
HMGB1P28-201ENST00000507778 ADIRFQ15847 76 aa-0.65□□□□□ -2.51
HMGB1P28-201ENST00000507778 DEFB121Q5J5C9 76 aa-0.65□□□□□ -2.51
HMGB1P28-201ENST00000507778 FREM2Q5SZK8 3169 aa-0.65□□□□□ -2.51
HMGB1P28-201ENST00000507778 VPS13CQ709C8 3753 aa-0.66□□□□□ -2.51
HMGB1P28-201ENST00000507778 CCDC18Q5T9S5 1454 aa-0.66□□□□□ -2.51
HMGB1P28-201ENST00000507778 DDX60Q8IY21 1712 aaKnown RBP-0.66□□□□□ -2.51
HMGB1P28-201ENST00000507778 M0QZ58 72 aa-0.66□□□□□ -2.52
HMGB1P28-201ENST00000507778 SPART-AS1P0CW21 52 aa-0.66□□□□□ -2.52
HMGB1P28-201ENST00000507778 UGGT2Q9NYU1 1516 aa-0.66□□□□□ -2.52
HMGB1P28-201ENST00000507778 ANKARQ7Z5J8 1434 aa-0.66□□□□□ -2.52
HMGB1P28-201ENST00000507778 IQGAP1P46940 1657 aa-0.66□□□□□ -2.52
HMGB1P28-201ENST00000507778 MT1BP07438 61 aa-0.67□□□□□ -2.52
HMGB1P28-201ENST00000507778 SPEGQ15772 3267 aa-0.68□□□□□ -2.52
HMGB1P28-201ENST00000507778 WFDC10BQ8IUB3 73 aa-0.68□□□□□ -2.52
HMGB1P28-201ENST00000507778 UGGT1Q9NYU2 1555 aa-0.68□□□□□ -2.52
HMGB1P28-201ENST00000507778 ITPR2Q14571 2701 aa-0.68□□□□□ -2.52
HMGB1P28-201ENST00000507778 BOD1L1Q8NFC6 3051 aa-0.68□□□□□ -2.52
HMGB1P28-201ENST00000507778 WDFY3Q8IZQ1 3526 aa-0.69□□□□□ -2.52
HMGB1P28-201ENST00000507778 EEA1Q15075 1411 aa-0.69□□□□□ -2.52
HMGB1P28-201ENST00000507778 K7EMI3 77 aa-0.69□□□□□ -2.52
HMGB1P28-201ENST00000507778 M0R1W7 72 aa-0.69□□□□□ -2.52
HMGB1P28-201ENST00000507778 DEFB114Q30KQ6 69 aa-0.69□□□□□ -2.52
HMGB1P28-201ENST00000507778 LEAP2Q969E1 77 aa-0.69□□□□□ -2.52
HMGB1P28-201ENST00000507778 S100A13Q99584 98 aa-0.69□□□□□ -2.52
HMGB1P28-201ENST00000507778 ABRACLQ9P1F3 81 aa-0.69□□□□□ -2.52
HMGB1P28-201ENST00000507778 GNG13Q9P2W3 67 aa-0.69□□□□□ -2.52
HMGB1P28-201ENST00000507778 NRXN3Q9Y4C0 1643 aa-0.69□□□□□ -2.52
HMGB1P28-201ENST00000507778 PRUNE2Q8WUY3 3088 aa-0.7□□□□□ -2.52
HMGB1P28-201ENST00000507778 ATXN8Q156A1 80 aa-0.7□□□□□ -2.52
HMGB1P28-201ENST00000507778 C18orf32Q8TCD1 76 aa-0.7□□□□□ -2.52
HMGB1P28-201ENST00000507778 PCNTO95613 3336 aa-0.7□□□□□ -2.52
HMGB1P28-201ENST00000507778 CEP350Q5VT06 3117 aa-0.7□□□□□ -2.52
HMGB1P28-201ENST00000507778 POLR2KP53803 58 aaKnown RBP-0.71□□□□□ -2.52
HMGB1P28-201ENST00000507778 GNG2P59768 71 aa-0.71□□□□□ -2.52
HMGB1P28-201ENST00000507778 DMDP11532 3685 aa-0.71□□□□□ -2.52
HMGB1P28-201ENST00000507778 WDFY4Q6ZS81 3184 aa-0.72□□□□□ -2.52
HMGB1P28-201ENST00000507778 SYCP2Q9BX26 1530 aa-0.72□□□□□ -2.52
HMGB1P28-201ENST00000507778 LINC01549A6NIU2 74 aa-0.72□□□□□ -2.52
HMGB1P28-201ENST00000507778 LINC00308Q8TCZ7 52 aa-0.72□□□□□ -2.52
HMGB1P28-201ENST00000507778 CLTCL1P53675 1640 aa-0.72□□□□□ -2.52
HMGB1P28-201ENST00000507778 SZT2Q5T011 3432 aa-0.73□□□□□ -2.53
HMGB1P28-201ENST00000507778 SMIM27A0A1W2PRY6 76 aa-0.73□□□□□ -2.53
HMGB1P28-201ENST00000507778 DUOX2Q9NRD8 1548 aa-0.74□□□□□ -2.53
HMGB1P28-201ENST00000507778 SCRIBQ14160 1630 aa-0.74□□□□□ -2.53
HMGB1P28-201ENST00000507778 FRYLO94915 3013 aa-0.74□□□□□ -2.53
HMGB1P28-201ENST00000507778 DEFB136Q30KP8 78 aa-0.74□□□□□ -2.53
HMGB1P28-201ENST00000507778 CFAP54Q96N23 3096 aa-0.74□□□□□ -2.53
HMGB1P28-201ENST00000507778 NFAT5O94916 1531 aa-0.74□□□□□ -2.53
HMGB1P28-201ENST00000507778 ABCA5Q8WWZ7 1642 aa-0.75□□□□□ -2.53
HMGB1P28-201ENST00000507778 RPS29P62273 56 aaKnown RBP-0.75□□□□□ -2.53
HMGB1P28-201ENST00000507778 TFF3Q07654 80 aa-0.75□□□□□ -2.53
HMGB1P28-201ENST00000507778 TMEM167BQ9NRX6 74 aa-0.75□□□□□ -2.53
HMGB1P28-201ENST00000507778 EFCAB5A4FU69 1503 aa-0.75□□□□□ -2.53
HMGB1P28-201ENST00000507778 XIRP2A4UGR9 3374 aa-0.76□□□□□ -2.53
HMGB1P28-201ENST00000507778 KRTAP19-6Q3LI70 58 aa-0.76□□□□□ -2.53
HMGB1P28-201ENST00000507778 NMES1Q9C002 83 aa-0.76□□□□□ -2.53
HMGB1P28-201ENST00000507778 CPS1P31327 1500 aa-0.76□□□□□ -2.53
HMGB1P28-201ENST00000507778 AGLP35573 1532 aa-0.76□□□□□ -2.53
HMGB1P28-201ENST00000507778 ABCA10Q8WWZ4 1543 aa-0.76□□□□□ -2.53
HMGB1P28-201ENST00000507778 DCHS1Q96JQ0 3298 aa-0.76□□□□□ -2.53
HMGB1P28-201ENST00000507778 IGIPA6NJ69 53 aa-0.77□□□□□ -2.53
HMGB1P28-201ENST00000507778 MUC3AQ02505 3323 aa-0.77□□□□□ -2.53
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms