RNA–Protein interactions for RNA: ENST00000503492.5

PCDH1-204, Transcript of protocadherin 1, humanhuman

TSL 5 BASIC

Gene PCDH1, Length 2,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-204ENST00000503492 SPATA8Q6RVD6 105 aa11.56□□□□□ -0.56
PCDH1-204ENST00000503492 MIR22HGQ0VDD5 57 aa11.52□□□□□ -0.57
PCDH1-204ENST00000503492 A6NN06 94 aa11.48□□□□□ -0.57
PCDH1-204ENST00000503492 KRTAP3-3Q9BYR6 98 aa11.42□□□□□ -0.58
PCDH1-204ENST00000503492 LRP2P98164 4655 aa11.42□□□□□ -0.58
PCDH1-204ENST00000503492 ABCA13Q86UQ4 5058 aa11.42□□□□□ -0.58
PCDH1-204ENST00000503492 LPAP08519 4548 aa11.38□□□□□ -0.59
PCDH1-204ENST00000503492 S4R3F8 94 aa11.34□□□□□ -0.59
PCDH1-204ENST00000503492 A0A1B0GU33 70 aa11.33□□□□□ -0.6
PCDH1-204ENST00000503492 H1FX-AS1Q4G0G2 97 aa11.31□□□□□ -0.6
PCDH1-204ENST00000503492 H0YAA0 97 aa11.31□□□□□ -0.6
PCDH1-204ENST00000503492 J3QL48 77 aa11.28□□□□□ -0.6
PCDH1-204ENST00000503492 KTN1-AS1Q86SY8 53 aa11.27□□□□□ -0.6
PCDH1-204ENST00000503492 HERC2O95714 4834 aa11.21□□□□□ -0.62
PCDH1-204ENST00000503492 RBM12B-AS1Q9P1G2 102 aa11.19□□□□□ -0.62
PCDH1-204ENST00000503492 KRTAP10-6P60371 365 aaPredicted RBP11.19□□□□□ -0.62
PCDH1-204ENST00000503492 KRTAP3-2Q9BYR7 98 aa11.16□□□□□ -0.62
PCDH1-204ENST00000503492 BIRC6Q9NR09 4857 aa11.15□□□□□ -0.63
PCDH1-204ENST00000503492 SEC61BP60468 96 aaKnown RBP11.12□□□□□ -0.63
PCDH1-204ENST00000503492 P0C880 135 aa11.02□□□□□ -0.65
PCDH1-204ENST00000503492 KRTAP4-1Q9BYQ7 146 aa11.02□□□□□ -0.65
PCDH1-204ENST00000503492 KRTAP13-4Q3LI77 160 aa11.01□□□□□ -0.65
PCDH1-204ENST00000503492 CSAG1Q6PB30 78 aa11□□□□□ -0.65
PCDH1-204ENST00000503492 MUC17Q685J3 4493 aa10.98□□□□□ -0.65
PCDH1-204ENST00000503492 ADM2Q7Z4H4 148 aa10.96□□□□□ -0.65
PCDH1-204ENST00000503492 PRAC1Q96KF2 57 aa10.91□□□□□ -0.66
PCDH1-204ENST00000503492 A0A0D9SG42 100 aa10.84□□□□□ -0.67
PCDH1-204ENST00000503492 K7ERS5 55 aa10.81□□□□□ -0.68
PCDH1-204ENST00000503492 KRTAP19-2Q3LHN2 52 aa10.79□□□□□ -0.68
PCDH1-204ENST00000503492 PCLOQ9Y6V0 5065 aa10.69□□□□□ -0.7
PCDH1-204ENST00000503492 M0QZ58 72 aa10.66□□□□□ -0.7
PCDH1-204ENST00000503492 HERC1Q15751 4861 aa10.63□□□□□ -0.71
PCDH1-204ENST00000503492 KRTAP12-2P59991 146 aa10.6□□□□□ -0.71
PCDH1-204ENST00000503492 HMCN2Q8NDA2 5059 aa10.58□□□□□ -0.72
PCDH1-204ENST00000503492 KRTAP12-1P59990 96 aa10.57□□□□□ -0.72
PCDH1-204ENST00000503492 MUC2Q02817 5179 aa10.55□□□□□ -0.72
PCDH1-204ENST00000503492 ROMO1P60602 79 aa10.53□□□□□ -0.72
PCDH1-204ENST00000503492 SPINT4Q6UDR6 99 aa10.51□□□□□ -0.73
PCDH1-204ENST00000503492 LORP23490 312 aaPredicted RBP10.5□□□□□ -0.73
PCDH1-204ENST00000503492 R4GN34 69 aa10.48□□□□□ -0.73
PCDH1-204ENST00000503492 KRTAP25-1Q3LHN0 102 aa10.43□□□□□ -0.74
PCDH1-204ENST00000503492 FLGP20930 4061 aaPredicted RBP10.42□□□□□ -0.74
PCDH1-204ENST00000503492 LINC01554Q52M75 96 aa10.41□□□□□ -0.74
PCDH1-204ENST00000503492 CRIPTQ9P021 101 aa10.41□□□□□ -0.74
PCDH1-204ENST00000503492 LCE2CQ5TA81 110 aa10.3□□□□□ -0.76
PCDH1-204ENST00000503492 C10orf95Q9H7T3 257 aa10.14□□□□□ -0.79
PCDH1-204ENST00000503492 FAT4Q6V0I7 4981 aa10.09□□□□□ -0.79
PCDH1-204ENST00000503492 RNF213Q63HN8 5207 aa10.08□□□□□ -0.8
PCDH1-204ENST00000503492 UBR4Q5T4S7 5183 aa10.08□□□□□ -0.8
PCDH1-204ENST00000503492 MT1HP80294 61 aa10.03□□□□□ -0.8
PCDH1-204ENST00000503492 M0R2T5 61 aa9.97□□□□□ -0.81
PCDH1-204ENST00000503492 CAMK2N1Q7Z7J9 78 aa9.89□□□□□ -0.83
PCDH1-204ENST00000503492 SPRR2GQ9BYE4 73 aa9.82□□□□□ -0.84
PCDH1-204ENST00000503492 KRTAP19-1Q8IUB9 90 aa9.8□□□□□ -0.84
PCDH1-204ENST00000503492 MT2AP02795 61 aa9.78□□□□□ -0.84
PCDH1-204ENST00000503492 MT1FP04733 61 aa9.76□□□□□ -0.85
PCDH1-204ENST00000503492 KRTAP9-8Q9BYQ0 159 aa9.75□□□□□ -0.85
PCDH1-204ENST00000503492 KRTAP10-10P60014 251 aa9.71□□□□□ -0.86
PCDH1-204ENST00000503492 PLAC4Q8WY50 150 aa9.6□□□□□ -0.87
PCDH1-204ENST00000503492 TNP1P09430 55 aa9.49□□□□□ -0.89
PCDH1-204ENST00000503492 PP632Q6XCG6 107 aa9.47□□□□□ -0.89
PCDH1-204ENST00000503492 KRTAP19-8Q3LI54 63 aa9.46□□□□□ -0.89
PCDH1-204ENST00000503492 KRTAP15-1Q3LI76 137 aa9.41□□□□□ -0.9
PCDH1-204ENST00000503492 KRTAP9-3Q9BYQ3 159 aa9.37□□□□□ -0.91
PCDH1-204ENST00000503492 MT1BP07438 61 aa9.36□□□□□ -0.91
PCDH1-204ENST00000503492 KRTAP23-1A1A580 65 aa9.29□□□□□ -0.92
PCDH1-204ENST00000503492 LCE2AQ5TA79 106 aaPredicted RBP9.2□□□□□ -0.94
PCDH1-204ENST00000503492 KRTAP10-5P60370 271 aa9.19□□□□□ -0.94
PCDH1-204ENST00000503492 MT1XP80297 61 aa9.18□□□□□ -0.94
PCDH1-204ENST00000503492 LCE3AQ5TA76 89 aa9.06□□□□□ -0.96
PCDH1-204ENST00000503492 LCE2BO14633 110 aa9.05□□□□□ -0.96
PCDH1-204ENST00000503492 H3BS24 57 aa8.98□□□□□ -0.97
PCDH1-204ENST00000503492 NDUFAF8A1L188 74 aa8.96□□□□□ -0.98
PCDH1-204ENST00000503492 KRTAP10-7P60409 375 aaPredicted RBP8.88□□□□□ -0.99
PCDH1-204ENST00000503492 PRO2289Q9P1D8 64 aa8.88□□□□□ -0.99
PCDH1-204ENST00000503492 KRTAP10-12P60413 245 aa8.85□□□□□ -0.99
PCDH1-204ENST00000503492 KRTAP8-1Q8IUC2 63 aa8.85□□□□□ -0.99
PCDH1-204ENST00000503492 USH2AO75445 5202 aa8.73□□□□□ -1.01
PCDH1-204ENST00000503492 SPRR5A0A1B0GTR4 108 aa8.7□□□□□ -1.02
PCDH1-204ENST00000503492 KRTAP12-3P60328 96 aa8.64□□□□□ -1.03
PCDH1-204ENST00000503492 LUZP6Q538Z0 58 aa8.63□□□□□ -1.03
PCDH1-204ENST00000503492 KRTAP19-5Q3LI72 72 aa8.43□□□□□ -1.06
PCDH1-204ENST00000503492 KRTAP4-8A0A0G2JLE6 195 aa8.42□□□□□ -1.06
PCDH1-204ENST00000503492 KRTAP4-8Q9BYQ9 185 aa8.42□□□□□ -1.06
PCDH1-204ENST00000503492 KMT2DO14686 5537 aa8.38□□□□□ -1.07
PCDH1-204ENST00000503492 SSPOA2VEC9 5147 aa8.32□□□□□ -1.08
PCDH1-204ENST00000503492 KRTAP19-6Q3LI70 58 aa8.27□□□□□ -1.09
PCDH1-204ENST00000503492 KRTAP19-7Q3SYF9 63 aa8.19□□□□□ -1.1
PCDH1-204ENST00000503492 LCE3CQ5T5A8 94 aa8.12□□□□□ -1.11
PCDH1-204ENST00000503492 FSIP2Q5CZC0 6907 aa8.08□□□□□ -1.12
PCDH1-204ENST00000503492 LCE2DQ5TA82 110 aaPredicted RBP8.06□□□□□ -1.12
PCDH1-204ENST00000503492 MT1EP04732 61 aa7.98□□□□□ -1.13
PCDH1-204ENST00000503492 MT1LQ93083 61 aa7.91□□□□□ -1.14
PCDH1-204ENST00000503492 A0A0A0MQY5 61 aa7.91□□□□□ -1.14
PCDH1-204ENST00000503492 KRTAP4-7Q9BYR0 210 aa7.87□□□□□ -1.15
PCDH1-204ENST00000503492 FCGBPQ9Y6R7 5405 aaPredicted RBP7.84□□□□□ -1.16
PCDH1-204ENST00000503492 KRTAP19-4Q3LI73 84 aa7.82□□□□□ -1.16
PCDH1-204ENST00000503492 KRTAP9-6A8MVA2 160 aa7.8□□□□□ -1.16
PCDH1-204ENST00000503492 KRTAP19-3Q7Z4W3 81 aa7.55□□□□□ -1.2
PCDH1-204ENST00000503492 MUC12Q9UKN1 5478 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms