RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 UQCR11O14957 56 aa6.42□□□□□ -1.38
NUP54-202ENST00000502850 SPATA8Q6RVD6 105 aa6.38□□□□□ -1.39
NUP54-202ENST00000502850 A6NN06 94 aa6.36□□□□□ -1.39
NUP54-202ENST00000502850 MIR22HGQ0VDD5 57 aa6.36□□□□□ -1.39
NUP54-202ENST00000502850 COX6B2Q6YFQ2 88 aa6.36□□□□□ -1.39
NUP54-202ENST00000502850 KTN1-AS1Q86SY8 53 aa6.36□□□□□ -1.39
NUP54-202ENST00000502850 FAT3Q8TDW7 4589 aa6.35□□□□□ -1.39
NUP54-202ENST00000502850 RPL37P61927 97 aaKnown RBP6.35□□□□□ -1.39
NUP54-202ENST00000502850 MT1HL1P0DM35 61 aa6.34□□□□□ -1.39
NUP54-202ENST00000502850 LRP1Q07954 4544 aaKnown RBP6.33□□□□□ -1.4
NUP54-202ENST00000502850 TNXBP22105 4242 aa6.32□□□□□ -1.4
NUP54-202ENST00000502850 KRTAP3-1Q9BYR8 98 aa6.31□□□□□ -1.4
NUP54-202ENST00000502850 XP32Q5T750 250 aa6.28□□□□□ -1.4
NUP54-202ENST00000502850 A0A1B0GU33 70 aa6.2□□□□□ -1.42
NUP54-202ENST00000502850 HMCN2Q8NDA2 5059 aa6.19□□□□□ -1.42
NUP54-202ENST00000502850 TPRXLQ17RH7 258 aa6.19□□□□□ -1.42
NUP54-202ENST00000502850 H1FX-AS1Q4G0G2 97 aa6.18□□□□□ -1.42
NUP54-202ENST00000502850 S4R3F8 94 aa6.14□□□□□ -1.43
NUP54-202ENST00000502850 H0YAA0 97 aa6.13□□□□□ -1.43
NUP54-202ENST00000502850 UBR4Q5T4S7 5183 aa6.11□□□□□ -1.43
NUP54-202ENST00000502850 K7ERS5 55 aa6.08□□□□□ -1.44
NUP54-202ENST00000502850 RBM12B-AS1Q9P1G2 102 aa6.07□□□□□ -1.44
NUP54-202ENST00000502850 LOC100996750A0A140TA64 210 aa6.06□□□□□ -1.44
NUP54-202ENST00000502850 KRTAP4-6Q9BYQ5 205 aa6.06□□□□□ -1.44
NUP54-202ENST00000502850 LRP2P98164 4655 aa6.03□□□□□ -1.44
NUP54-202ENST00000502850 KRTAP10-6P60371 365 aaPredicted RBP5.99□□□□□ -1.45
NUP54-202ENST00000502850 SEC61BP60468 96 aaKnown RBP5.99□□□□□ -1.45
NUP54-202ENST00000502850 CSAG1Q6PB30 78 aa5.96□□□□□ -1.45
NUP54-202ENST00000502850 PRAC1Q96KF2 57 aa5.96□□□□□ -1.45
NUP54-202ENST00000502850 RNF213Q63HN8 5207 aa5.94□□□□□ -1.46
NUP54-202ENST00000502850 ADM2Q7Z4H4 148 aa5.94□□□□□ -1.46
NUP54-202ENST00000502850 LPAP08519 4548 aa5.9□□□□□ -1.47
NUP54-202ENST00000502850 P0C880 135 aa5.88□□□□□ -1.47
NUP54-202ENST00000502850 KRTAP13-4Q3LI77 160 aa5.86□□□□□ -1.47
NUP54-202ENST00000502850 M0QZ58 72 aa5.85□□□□□ -1.47
NUP54-202ENST00000502850 LINC01554Q52M75 96 aa5.84□□□□□ -1.47
NUP54-202ENST00000502850 A0A0D9SG42 100 aa5.83□□□□□ -1.48
NUP54-202ENST00000502850 ROMO1P60602 79 aa5.83□□□□□ -1.48
NUP54-202ENST00000502850 LCE2BO14633 110 aa5.81□□□□□ -1.48
NUP54-202ENST00000502850 KRTAP25-1Q3LHN0 102 aa5.79□□□□□ -1.48
NUP54-202ENST00000502850 MUC17Q685J3 4493 aa5.72□□□□□ -1.49
NUP54-202ENST00000502850 MUC2Q02817 5179 aa5.71□□□□□ -1.5
NUP54-202ENST00000502850 KRTAP12-1P59990 96 aa5.7□□□□□ -1.5
NUP54-202ENST00000502850 KRTAP12-2P59991 146 aa5.69□□□□□ -1.5
NUP54-202ENST00000502850 SPINT4Q6UDR6 99 aa5.69□□□□□ -1.5
NUP54-202ENST00000502850 R4GN34 69 aa5.69□□□□□ -1.5
NUP54-202ENST00000502850 LCE2AQ5TA79 106 aaPredicted RBP5.68□□□□□ -1.5
NUP54-202ENST00000502850 KRTAP4-1Q9BYQ7 146 aa5.68□□□□□ -1.5
NUP54-202ENST00000502850 KRTAP19-2Q3LHN2 52 aa5.62□□□□□ -1.51
NUP54-202ENST00000502850 CRIPTQ9P021 101 aa5.61□□□□□ -1.51
NUP54-202ENST00000502850 KRTAP9-2Q9BYQ4 174 aa5.6□□□□□ -1.51
NUP54-202ENST00000502850 FAT4Q6V0I7 4981 aa5.58□□□□□ -1.52
NUP54-202ENST00000502850 LORP23490 312 aaPredicted RBP5.47□□□□□ -1.53
NUP54-202ENST00000502850 FLGP20930 4061 aaPredicted RBP5.46□□□□□ -1.54
NUP54-202ENST00000502850 LCE2CQ5TA81 110 aa5.45□□□□□ -1.54
NUP54-202ENST00000502850 C10orf95Q9H7T3 257 aa5.45□□□□□ -1.54
NUP54-202ENST00000502850 KRTAP9-6A0A140TA67 174 aa5.43□□□□□ -1.54
NUP54-202ENST00000502850 MT1HP80294 61 aa5.39□□□□□ -1.55
NUP54-202ENST00000502850 CAMK2N1Q7Z7J9 78 aa5.39□□□□□ -1.55
NUP54-202ENST00000502850 KRTAP4-8Q9BYQ9 185 aa5.36□□□□□ -1.55
NUP54-202ENST00000502850 PP632Q6XCG6 107 aa5.31□□□□□ -1.56
NUP54-202ENST00000502850 M0R2T5 61 aa5.3□□□□□ -1.56
NUP54-202ENST00000502850 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.3□□□□□ -1.56
NUP54-202ENST00000502850 CRCT1Q9UGL9 99 aa5.28□□□□□ -1.56
NUP54-202ENST00000502850 SPRR2GQ9BYE4 73 aa5.24□□□□□ -1.57
NUP54-202ENST00000502850 FSIP2Q5CZC0 6907 aa5.22□□□□□ -1.57
NUP54-202ENST00000502850 TNP1P09430 55 aa5.2□□□□□ -1.58
NUP54-202ENST00000502850 KRTAP15-1Q3LI76 137 aa5.2□□□□□ -1.58
NUP54-202ENST00000502850 PLAC4Q8WY50 150 aa5.2□□□□□ -1.58
NUP54-202ENST00000502850 KRTAP23-1A1A580 65 aa5.19□□□□□ -1.58
NUP54-202ENST00000502850 KRTAP19-1Q8IUB9 90 aa5.14□□□□□ -1.59
NUP54-202ENST00000502850 MT2AP02795 61 aa5.12□□□□□ -1.59
NUP54-202ENST00000502850 KRTAP10-10P60014 251 aa5.12□□□□□ -1.59
NUP54-202ENST00000502850 KRTAP9-8Q9BYQ0 159 aa5.1□□□□□ -1.59
NUP54-202ENST00000502850 MT1FP04733 61 aa5.08□□□□□ -1.6
NUP54-202ENST00000502850 KRTAP19-8Q3LI54 63 aa5.05□□□□□ -1.6
NUP54-202ENST00000502850 H3BS24 57 aa5.04□□□□□ -1.6
NUP54-202ENST00000502850 LCE3BQ5TA77 95 aa5.04□□□□□ -1.6
NUP54-202ENST00000502850 KRTAP4-8A0A0G2JLE6 195 aa5.03□□□□□ -1.6
NUP54-202ENST00000502850 KRTAP9-9Q9BYP9 154 aa5□□□□□ -1.61
NUP54-202ENST00000502850 KRTAP9-4Q9BYQ2 154 aa5□□□□□ -1.61
NUP54-202ENST00000502850 NDUFAF8A1L188 74 aa4.98□□□□□ -1.61
NUP54-202ENST00000502850 KRTAP9-3Q9BYQ3 159 aa4.94□□□□□ -1.62
NUP54-202ENST00000502850 KRTAP4-12Q9BQ66 201 aa4.93□□□□□ -1.62
NUP54-202ENST00000502850 LUZP6Q538Z0 58 aa4.91□□□□□ -1.62
NUP54-202ENST00000502850 MT1BP07438 61 aa4.9□□□□□ -1.63
NUP54-202ENST00000502850 USH2AO75445 5202 aa4.89□□□□□ -1.63
NUP54-202ENST00000502850 KRTAP9-7A8MTY7 169 aa4.88□□□□□ -1.63
NUP54-202ENST00000502850 KRTAP4-7Q9BYR0 210 aa4.88□□□□□ -1.63
NUP54-202ENST00000502850 PRO2289Q9P1D8 64 aa4.85□□□□□ -1.63
NUP54-202ENST00000502850 SSPOA2VEC9 5147 aa4.85□□□□□ -1.63
NUP54-202ENST00000502850 KRTAP10-5P60370 271 aa4.83□□□□□ -1.64
NUP54-202ENST00000502850 MT1XP80297 61 aa4.83□□□□□ -1.64
NUP54-202ENST00000502850 LCE3AQ5TA76 89 aa4.83□□□□□ -1.64
NUP54-202ENST00000502850 SPRR5A0A1B0GTR4 108 aa4.79□□□□□ -1.64
NUP54-202ENST00000502850 KRTAP8-1Q8IUC2 63 aa4.79□□□□□ -1.64
NUP54-202ENST00000502850 FCGBPQ9Y6R7 5405 aaPredicted RBP4.79□□□□□ -1.64
NUP54-202ENST00000502850 KRTAP10-12P60413 245 aa4.77□□□□□ -1.65
NUP54-202ENST00000502850 KRTAP19-6Q3LI70 58 aa4.77□□□□□ -1.65
NUP54-202ENST00000502850 LCE1DQ5T752 114 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms