RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 KRTAP9-7A8MTY7 169 aa5.95□□□□□ -1.46
CUX1-210ENST00000497815 MP68P56378 58 aa5.95□□□□□ -1.46
CUX1-210ENST00000497815 C1orf64Q8NEQ6 169 aa5.95□□□□□ -1.46
CUX1-210ENST00000497815 LINC00208Q96KT6 92 aa5.95□□□□□ -1.46
CUX1-210ENST00000497815 M0R2T5 61 aa5.93□□□□□ -1.46
CUX1-210ENST00000497815 C5orf47Q569G3 176 aa5.93□□□□□ -1.46
CUX1-210ENST00000497815 LCE5AQ5TCM9 118 aa5.92□□□□□ -1.46
CUX1-210ENST00000497815 SMIM20Q8N5G0 67 aa5.91□□□□□ -1.46
CUX1-210ENST00000497815 TRAV7A0A075B6U4 112 aa5.9□□□□□ -1.46
CUX1-210ENST00000497815 KLKP1Q107X0 134 aa5.87□□□□□ -1.47
CUX1-210ENST00000497815 H1FX-AS1Q4G0G2 97 aa5.87□□□□□ -1.47
CUX1-210ENST00000497815 H3BPC8 53 aa5.86□□□□□ -1.47
CUX1-210ENST00000497815 KRTAP3-1Q9BYR8 98 aa5.84□□□□□ -1.47
CUX1-210ENST00000497815 FLGP20930 4061 aaPredicted RBP5.82□□□□□ -1.48
CUX1-210ENST00000497815 SERP2Q8N6R1 65 aa5.82□□□□□ -1.48
CUX1-210ENST00000497815 KRTAP10-6P60371 365 aaPredicted RBP5.81□□□□□ -1.48
CUX1-210ENST00000497815 SNURFQ9Y675 71 aa5.79□□□□□ -1.48
CUX1-210ENST00000497815 C20orf197Q8N268 126 aa5.78□□□□□ -1.48
CUX1-210ENST00000497815 KRTAP9-3Q9BYQ3 159 aa5.77□□□□□ -1.49
CUX1-210ENST00000497815 S4R3F8 94 aa5.76□□□□□ -1.49
CUX1-210ENST00000497815 COX7CP15954 63 aa5.73□□□□□ -1.49
CUX1-210ENST00000497815 LCA10Q71F78 164 aa5.73□□□□□ -1.49
CUX1-210ENST00000497815 A8MUN3 132 aa5.72□□□□□ -1.49
CUX1-210ENST00000497815 ANAPC13Q9BS18 74 aa5.72□□□□□ -1.49
CUX1-210ENST00000497815 KRTAP9-8Q9BYQ0 159 aa5.69□□□□□ -1.5
CUX1-210ENST00000497815 DMAC1Q96GE9 116 aa5.68□□□□□ -1.5
CUX1-210ENST00000497815 MT2AP02795 61 aa5.66□□□□□ -1.5
CUX1-210ENST00000497815 CSAG1Q6PB30 78 aa5.66□□□□□ -1.5
CUX1-210ENST00000497815 FSIP2Q5CZC0 6907 aa5.66□□□□□ -1.5
CUX1-210ENST00000497815 NDUFC1O43677 76 aa5.63□□□□□ -1.51
CUX1-210ENST00000497815 MT1FP04733 61 aa5.62□□□□□ -1.51
CUX1-210ENST00000497815 KRTAP10-10P60014 251 aa5.62□□□□□ -1.51
CUX1-210ENST00000497815 CYSTM1Q9H1C7 97 aa5.62□□□□□ -1.51
CUX1-210ENST00000497815 ACYP2P14621 99 aa5.61□□□□□ -1.51
CUX1-210ENST00000497815 SPANXA2-OT1Q8N9U9 137 aa5.61□□□□□ -1.51
CUX1-210ENST00000497815 CCDC179H3BU77 68 aa5.6□□□□□ -1.51
CUX1-210ENST00000497815 H7BZZ5 65 aa5.57□□□□□ -1.52
CUX1-210ENST00000497815 KRTAP5-3Q6L8H2 238 aa5.56□□□□□ -1.52
CUX1-210ENST00000497815 CHKB-CPT1BH3BT56 60 aa5.54□□□□□ -1.52
CUX1-210ENST00000497815 SPTSSBQ8NFR3 76 aa5.48□□□□□ -1.53
CUX1-210ENST00000497815 ADM2Q7Z4H4 148 aa5.47□□□□□ -1.53
CUX1-210ENST00000497815 COA5Q86WW8 74 aa5.47□□□□□ -1.53
CUX1-210ENST00000497815 H0YAA0 97 aa5.45□□□□□ -1.54
CUX1-210ENST00000497815 CRCT1Q9UGL9 99 aa5.45□□□□□ -1.54
CUX1-210ENST00000497815 P0C880 135 aa5.38□□□□□ -1.55
CUX1-210ENST00000497815 ATP5EP56381 51 aaPredicted RBP5.38□□□□□ -1.55
CUX1-210ENST00000497815 TMEM258P61165 79 aa5.37□□□□□ -1.55
CUX1-210ENST00000497815 CRIPTQ9P021 101 aa5.36□□□□□ -1.55
CUX1-210ENST00000497815 SPRR2GQ9BYE4 73 aa5.34□□□□□ -1.55
CUX1-210ENST00000497815 PCP4P48539 62 aa5.32□□□□□ -1.56
CUX1-210ENST00000497815 USH2AO75445 5202 aa5.32□□□□□ -1.56
CUX1-210ENST00000497815 R4GN34 69 aa5.29□□□□□ -1.56
CUX1-210ENST00000497815 M0QZ58 72 aa5.28□□□□□ -1.56
CUX1-210ENST00000497815 SEC61GP60059 68 aa5.26□□□□□ -1.57
CUX1-210ENST00000497815 Q5VV11 94 aa5.26□□□□□ -1.57
CUX1-210ENST00000497815 KRTAP19-8Q3LI54 63 aa5.25□□□□□ -1.57
CUX1-210ENST00000497815 SERP1Q9Y6X1 66 aa5.24□□□□□ -1.57
CUX1-210ENST00000497815 MT1BP07438 61 aa5.23□□□□□ -1.57
CUX1-210ENST00000497815 LINC01554Q52M75 96 aa5.22□□□□□ -1.57
CUX1-210ENST00000497815 SSPOA2VEC9 5147 aa5.22□□□□□ -1.57
CUX1-210ENST00000497815 A0A1B0GU69 56 aa5.19□□□□□ -1.58
CUX1-210ENST00000497815 KRTAP19-6Q3LI70 58 aa5.15□□□□□ -1.59
CUX1-210ENST00000497815 KRTAP13-4Q3LI77 160 aa5.15□□□□□ -1.59
CUX1-210ENST00000497815 A0A1B0GU33 70 aa5.14□□□□□ -1.59
CUX1-210ENST00000497815 PLAC4Q8WY50 150 aa5.12□□□□□ -1.59
CUX1-210ENST00000497815 LINC01558Q9Y6Z2 57 aa5.12□□□□□ -1.59
CUX1-210ENST00000497815 PRR15LQ9BU68 103 aa5.11□□□□□ -1.59
CUX1-210ENST00000497815 SPATA8Q6RVD6 105 aa5.1□□□□□ -1.59
CUX1-210ENST00000497815 A0A0D9SG42 100 aa5.07□□□□□ -1.6
CUX1-210ENST00000497815 A6NN06 94 aa5.07□□□□□ -1.6
CUX1-210ENST00000497815 FCGBPQ9Y6R7 5405 aaPredicted RBP5.04□□□□□ -1.6
CUX1-210ENST00000497815 KRTAP10-5P60370 271 aa5.04□□□□□ -1.6
CUX1-210ENST00000497815 SMIM26A0A096LP01 95 aa5.02□□□□□ -1.61
CUX1-210ENST00000497815 SYNE2Q8WXH0 6885 aaKnown RBP5.01□□□□□ -1.61
CUX1-210ENST00000497815 RPS28P62857 69 aaKnown RBP5.01□□□□□ -1.61
CUX1-210ENST00000497815 V9GYY9 64 aa5.01□□□□□ -1.61
CUX1-210ENST00000497815 Q1T7F1 81 aa5□□□□□ -1.61
CUX1-210ENST00000497815 PSPHP1O15172 72 aa4.99□□□□□ -1.61
CUX1-210ENST00000497815 A8MU10 97 aa4.98□□□□□ -1.61
CUX1-210ENST00000497815 MT1XP80297 61 aa4.98□□□□□ -1.61
CUX1-210ENST00000497815 MACF1Q9UPN3 7388 aaKnown RBP4.98□□□□□ -1.61
CUX1-210ENST00000497815 PRO2289Q9P1D8 64 aa4.97□□□□□ -1.61
CUX1-210ENST00000497815 SPINT4Q6UDR6 99 aa4.96□□□□□ -1.62
CUX1-210ENST00000497815 UQCR11O14957 56 aa4.94□□□□□ -1.62
CUX1-210ENST00000497815 CAMK2N1Q7Z7J9 78 aa4.93□□□□□ -1.62
CUX1-210ENST00000497815 KRTAP12-1P59990 96 aa4.92□□□□□ -1.62
CUX1-210ENST00000497815 KRTAP12-2P59991 146 aa4.9□□□□□ -1.63
CUX1-210ENST00000497815 MIR22HGQ0VDD5 57 aa4.88□□□□□ -1.63
CUX1-210ENST00000497815 KRTAP23-1A1A580 65 aa4.86□□□□□ -1.63
CUX1-210ENST00000497815 A6NED7 52 aa4.83□□□□□ -1.64
CUX1-210ENST00000497815 KRTAP10-7P60409 375 aaPredicted RBP4.78□□□□□ -1.64
CUX1-210ENST00000497815 K7ERS5 55 aa4.72□□□□□ -1.65
CUX1-210ENST00000497815 KRTAP10-12P60413 245 aa4.71□□□□□ -1.66
CUX1-210ENST00000497815 KRTAP15-1Q3LI76 137 aa4.71□□□□□ -1.66
CUX1-210ENST00000497815 KRTAP6-3Q3LI67 103 aa4.7□□□□□ -1.66
CUX1-210ENST00000497815 C10orf95Q9H7T3 257 aa4.69□□□□□ -1.66
CUX1-210ENST00000497815 NEBP20929 6669 aa4.68□□□□□ -1.66
CUX1-210ENST00000497815 KRTAP8-1Q8IUC2 63 aa4.67□□□□□ -1.66
CUX1-210ENST00000497815 KMT2DO14686 5537 aa4.65□□□□□ -1.66
CUX1-210ENST00000497815 CDC42SE1Q9NRR8 79 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms