RNA–Protein interactions for RNA: ENST00000494748.1

SDF4-207, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 3,516 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-207ENST00000494748 KRTAP3-3Q9BYR6 98 aa7.99□□□□□ -1.13
SDF4-207ENST00000494748 KRTAP13-4Q3LI77 160 aa7.98□□□□□ -1.13
SDF4-207ENST00000494748 FAT3Q8TDW7 4589 aa7.96□□□□□ -1.13
SDF4-207ENST00000494748 TNXBP22105 4242 aa7.95□□□□□ -1.14
SDF4-207ENST00000494748 HSPG2P98160 4391 aa7.95□□□□□ -1.14
SDF4-207ENST00000494748 P0C880 135 aa7.94□□□□□ -1.14
SDF4-207ENST00000494748 KRTAP3-2Q9BYR7 98 aa7.93□□□□□ -1.14
SDF4-207ENST00000494748 SPINT4Q6UDR6 99 aa7.91□□□□□ -1.14
SDF4-207ENST00000494748 LRP1Q07954 4544 aaKnown RBP7.91□□□□□ -1.14
SDF4-207ENST00000494748 TPRXLQ17RH7 258 aa7.87□□□□□ -1.15
SDF4-207ENST00000494748 RPL37P61927 97 aaKnown RBP7.87□□□□□ -1.15
SDF4-207ENST00000494748 A0A1B0GVY2 172 aa7.81□□□□□ -1.16
SDF4-207ENST00000494748 KRTAP10-8P60410 259 aa7.81□□□□□ -1.16
SDF4-207ENST00000494748 C10orf95Q9H7T3 257 aa7.74□□□□□ -1.17
SDF4-207ENST00000494748 RYR2Q92736 4967 aa7.73□□□□□ -1.17
SDF4-207ENST00000494748 S4R3F8 94 aa7.72□□□□□ -1.17
SDF4-207ENST00000494748 KRTAP12-2P59991 146 aa7.71□□□□□ -1.18
SDF4-207ENST00000494748 MYCBP2O75592 4640 aa7.69□□□□□ -1.18
SDF4-207ENST00000494748 NDUFAF8A1L188 74 aa7.68□□□□□ -1.18
SDF4-207ENST00000494748 KRTAP15-1Q3LI76 137 aa7.66□□□□□ -1.18
SDF4-207ENST00000494748 XP32Q5T750 250 aa7.66□□□□□ -1.18
SDF4-207ENST00000494748 LPAP08519 4548 aa7.63□□□□□ -1.19
SDF4-207ENST00000494748 KRTAP12-1P59990 96 aa7.62□□□□□ -1.19
SDF4-207ENST00000494748 A0A0A0MQY5 61 aa7.6□□□□□ -1.19
SDF4-207ENST00000494748 KMT2CQ8NEZ4 4911 aaKnown RBP7.56□□□□□ -1.2
SDF4-207ENST00000494748 LRP2P98164 4655 aa7.44□□□□□ -1.22
SDF4-207ENST00000494748 KRTAP17-1Q9BYP8 105 aa7.44□□□□□ -1.22
SDF4-207ENST00000494748 M0QZ58 72 aa7.41□□□□□ -1.22
SDF4-207ENST00000494748 RYR1P21817 5038 aa7.4□□□□□ -1.22
SDF4-207ENST00000494748 Q5VSD8 79 aa7.39□□□□□ -1.23
SDF4-207ENST00000494748 MT1HL1P0DM35 61 aa7.36□□□□□ -1.23
SDF4-207ENST00000494748 RYR3Q15413 4870 aa7.35□□□□□ -1.23
SDF4-207ENST00000494748 LUZP6Q538Z0 58 aa7.22□□□□□ -1.25
SDF4-207ENST00000494748 MUC17Q685J3 4493 aa7.21□□□□□ -1.26
SDF4-207ENST00000494748 KIAA1109Q2LD37 5005 aa7.2□□□□□ -1.26
SDF4-207ENST00000494748 ABCA13Q86UQ4 5058 aa7.18□□□□□ -1.26
SDF4-207ENST00000494748 LORP23490 312 aaPredicted RBP7.18□□□□□ -1.26
SDF4-207ENST00000494748 R4GN34 69 aa7.17□□□□□ -1.26
SDF4-207ENST00000494748 PLAC4Q8WY50 150 aa7.09□□□□□ -1.28
SDF4-207ENST00000494748 EPPK1P58107 5090 aaKnown RBP7.05□□□□□ -1.28
SDF4-207ENST00000494748 CAMK2N1Q7Z7J9 78 aa7.04□□□□□ -1.28
SDF4-207ENST00000494748 KRTAP4-1Q9BYQ7 146 aa6.99□□□□□ -1.29
SDF4-207ENST00000494748 KRTAP19-2Q3LHN2 52 aa6.97□□□□□ -1.29
SDF4-207ENST00000494748 PP632Q6XCG6 107 aa6.87□□□□□ -1.31
SDF4-207ENST00000494748 KRTAP4-5Q9BYR2 181 aa6.84□□□□□ -1.31
SDF4-207ENST00000494748 SEC61BP60468 96 aaKnown RBP6.84□□□□□ -1.32
SDF4-207ENST00000494748 FLGP20930 4061 aaPredicted RBP6.81□□□□□ -1.32
SDF4-207ENST00000494748 J3QL48 77 aa6.76□□□□□ -1.33
SDF4-207ENST00000494748 HERC2O95714 4834 aa6.7□□□□□ -1.34
SDF4-207ENST00000494748 MUC2Q02817 5179 aa6.7□□□□□ -1.34
SDF4-207ENST00000494748 HERC1Q15751 4861 aa6.69□□□□□ -1.34
SDF4-207ENST00000494748 SPRR5A0A1B0GTR4 108 aa6.69□□□□□ -1.34
SDF4-207ENST00000494748 KRTAP23-1A1A580 65 aa6.64□□□□□ -1.35
SDF4-207ENST00000494748 BIRC6Q9NR09 4857 aa6.64□□□□□ -1.35
SDF4-207ENST00000494748 PCLOQ9Y6V0 5065 aa6.63□□□□□ -1.35
SDF4-207ENST00000494748 TNP1P09430 55 aa6.59□□□□□ -1.35
SDF4-207ENST00000494748 M0R2T5 61 aa6.49□□□□□ -1.37
SDF4-207ENST00000494748 SPRR2GQ9BYE4 73 aa6.4□□□□□ -1.39
SDF4-207ENST00000494748 KRTAP19-1Q8IUB9 90 aa6.39□□□□□ -1.39
SDF4-207ENST00000494748 LCE2CQ5TA81 110 aa6.38□□□□□ -1.39
SDF4-207ENST00000494748 HMCN2Q8NDA2 5059 aa6.36□□□□□ -1.39
SDF4-207ENST00000494748 FAT4Q6V0I7 4981 aa6.36□□□□□ -1.39
SDF4-207ENST00000494748 LCE3AQ5TA76 89 aa6.32□□□□□ -1.4
SDF4-207ENST00000494748 UBR4Q5T4S7 5183 aa6.19□□□□□ -1.42
SDF4-207ENST00000494748 KRTAP8-1Q8IUC2 63 aa6.16□□□□□ -1.42
SDF4-207ENST00000494748 MT1FP04733 61 aa6.13□□□□□ -1.43
SDF4-207ENST00000494748 MT1HP80294 61 aa6.12□□□□□ -1.43
SDF4-207ENST00000494748 MT2AP02795 61 aa6.11□□□□□ -1.43
SDF4-207ENST00000494748 PRO2289Q9P1D8 64 aa6.08□□□□□ -1.44
SDF4-207ENST00000494748 KRTAP10-10P60014 251 aa6.07□□□□□ -1.44
SDF4-207ENST00000494748 KRTAP19-8Q3LI54 63 aa6.07□□□□□ -1.44
SDF4-207ENST00000494748 RNF213Q63HN8 5207 aa6.07□□□□□ -1.44
SDF4-207ENST00000494748 KRTAP10-5P60370 271 aa6.06□□□□□ -1.44
SDF4-207ENST00000494748 KRTAP9-8Q9BYQ0 159 aa6.06□□□□□ -1.44
SDF4-207ENST00000494748 MT1XP80297 61 aa6.04□□□□□ -1.44
SDF4-207ENST00000494748 MT1BP07438 61 aa6.02□□□□□ -1.45
SDF4-207ENST00000494748 KRTAP10-12P60413 245 aa5.98□□□□□ -1.45
SDF4-207ENST00000494748 INE1O15225 51 aa5.97□□□□□ -1.45
SDF4-207ENST00000494748 KRTAP12-3P60328 96 aa5.96□□□□□ -1.46
SDF4-207ENST00000494748 KRTAP10-7P60409 375 aaPredicted RBP5.9□□□□□ -1.47
SDF4-207ENST00000494748 KRTAP9-3Q9BYQ3 159 aa5.78□□□□□ -1.48
SDF4-207ENST00000494748 KRTAP19-5Q3LI72 72 aa5.66□□□□□ -1.5
SDF4-207ENST00000494748 LCE3CQ5T5A8 94 aa5.66□□□□□ -1.5
SDF4-207ENST00000494748 FSIP2Q5CZC0 6907 aa5.62□□□□□ -1.51
SDF4-207ENST00000494748 KRTAP9-6A8MVA2 160 aa5.59□□□□□ -1.51
SDF4-207ENST00000494748 KMT2DO14686 5537 aa5.57□□□□□ -1.52
SDF4-207ENST00000494748 LCE2BO14633 110 aa5.52□□□□□ -1.53
SDF4-207ENST00000494748 USH2AO75445 5202 aa5.51□□□□□ -1.53
SDF4-207ENST00000494748 KRTAP4-8A0A0G2JLE6 195 aa5.47□□□□□ -1.53
SDF4-207ENST00000494748 KRTAP4-8Q9BYQ9 185 aa5.47□□□□□ -1.53
SDF4-207ENST00000494748 KRTAP2-3P0C7H8 128 aa5.46□□□□□ -1.54
SDF4-207ENST00000494748 LCE2AQ5TA79 106 aaPredicted RBP5.46□□□□□ -1.54
SDF4-207ENST00000494748 KRTAP2-4Q9BYR9 128 aa5.46□□□□□ -1.54
SDF4-207ENST00000494748 KRTAP2-1Q9BYU5 128 aa5.46□□□□□ -1.54
SDF4-207ENST00000494748 OBSCNQ5VST9 7968 aa5.41□□□□□ -1.54
SDF4-207ENST00000494748 KRTAP19-7Q3SYF9 63 aa5.39□□□□□ -1.55
SDF4-207ENST00000494748 KRTAP4-7Q9BYR0 210 aa5.38□□□□□ -1.55
SDF4-207ENST00000494748 CRCT1Q9UGL9 99 aa5.28□□□□□ -1.56
SDF4-207ENST00000494748 SYNE1Q8NF91 8797 aaKnown RBP5.26□□□□□ -1.57
SDF4-207ENST00000494748 MT1LQ93083 61 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms