RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 CSAG1Q6PB30 78 aa6.97□□□□□ -1.29
BRCA1-223ENST00000494123 KRTAP9-8Q9BYQ0 159 aa6.95□□□□□ -1.3
BRCA1-223ENST00000494123 NDUFC1O43677 76 aa6.93□□□□□ -1.3
BRCA1-223ENST00000494123 SPANXA2-OT1Q8N9U9 137 aa6.92□□□□□ -1.3
BRCA1-223ENST00000494123 MT2AP02795 61 aa6.91□□□□□ -1.3
BRCA1-223ENST00000494123 ACYP2P14621 99 aa6.91□□□□□ -1.3
BRCA1-223ENST00000494123 KRTAP10-10P60014 251 aa6.87□□□□□ -1.31
BRCA1-223ENST00000494123 CCDC179H3BU77 68 aa6.86□□□□□ -1.31
BRCA1-223ENST00000494123 MT1FP04733 61 aa6.86□□□□□ -1.31
BRCA1-223ENST00000494123 CYSTM1Q9H1C7 97 aa6.85□□□□□ -1.31
BRCA1-223ENST00000494123 H7BZZ5 65 aa6.84□□□□□ -1.31
BRCA1-223ENST00000494123 CHKB-CPT1BH3BT56 60 aa6.82□□□□□ -1.32
BRCA1-223ENST00000494123 KRTAP9-2Q9BYQ4 174 aa6.79□□□□□ -1.32
BRCA1-223ENST00000494123 SPTSSBQ8NFR3 76 aa6.78□□□□□ -1.32
BRCA1-223ENST00000494123 H0YAA0 97 aa6.72□□□□□ -1.33
BRCA1-223ENST00000494123 COA5Q86WW8 74 aa6.72□□□□□ -1.33
BRCA1-223ENST00000494123 KRTAP9-3Q9BYQ3 159 aa6.72□□□□□ -1.33
BRCA1-223ENST00000494123 ADM2Q7Z4H4 148 aa6.69□□□□□ -1.34
BRCA1-223ENST00000494123 ATP5EP56381 51 aaPredicted RBP6.67□□□□□ -1.34
BRCA1-223ENST00000494123 TMEM258P61165 79 aa6.64□□□□□ -1.35
BRCA1-223ENST00000494123 CRIPTQ9P021 101 aa6.62□□□□□ -1.35
BRCA1-223ENST00000494123 LCE2BO14633 110 aa6.61□□□□□ -1.35
BRCA1-223ENST00000494123 P0C880 135 aa6.58□□□□□ -1.36
BRCA1-223ENST00000494123 KRTAP19-1Q8IUB9 90 aa6.56□□□□□ -1.36
BRCA1-223ENST00000494123 SPRR2GQ9BYE4 73 aa6.55□□□□□ -1.36
BRCA1-223ENST00000494123 PCP4P48539 62 aa6.54□□□□□ -1.36
BRCA1-223ENST00000494123 FSIP2Q5CZC0 6907 aa6.52□□□□□ -1.37
BRCA1-223ENST00000494123 R4GN34 69 aa6.51□□□□□ -1.37
BRCA1-223ENST00000494123 SEC61GP60059 68 aa6.5□□□□□ -1.37
BRCA1-223ENST00000494123 CRCT1Q9UGL9 99 aa6.49□□□□□ -1.37
BRCA1-223ENST00000494123 USH2AO75445 5202 aa6.48□□□□□ -1.37
BRCA1-223ENST00000494123 M0QZ58 72 aa6.48□□□□□ -1.37
BRCA1-223ENST00000494123 SERP1Q9Y6X1 66 aa6.47□□□□□ -1.37
BRCA1-223ENST00000494123 Q5VV11 94 aa6.45□□□□□ -1.38
BRCA1-223ENST00000494123 KRTAP9-6A0A140TA67 174 aa6.44□□□□□ -1.38
BRCA1-223ENST00000494123 KRTAP19-8Q3LI54 63 aa6.44□□□□□ -1.38
BRCA1-223ENST00000494123 A0A1B0GU69 56 aa6.39□□□□□ -1.39
BRCA1-223ENST00000494123 MT1BP07438 61 aa6.38□□□□□ -1.39
BRCA1-223ENST00000494123 LINC01554Q52M75 96 aa6.38□□□□□ -1.39
BRCA1-223ENST00000494123 SSPOA2VEC9 5147 aa6.36□□□□□ -1.39
BRCA1-223ENST00000494123 PRR15LQ9BU68 103 aa6.32□□□□□ -1.4
BRCA1-223ENST00000494123 A0A1B0GU33 70 aa6.32□□□□□ -1.4
BRCA1-223ENST00000494123 KRTAP19-6Q3LI70 58 aa6.32□□□□□ -1.4
BRCA1-223ENST00000494123 LINC01558Q9Y6Z2 57 aa6.31□□□□□ -1.4
BRCA1-223ENST00000494123 PLAC4Q8WY50 150 aa6.3□□□□□ -1.4
BRCA1-223ENST00000494123 KRTAP13-4Q3LI77 160 aa6.28□□□□□ -1.4
BRCA1-223ENST00000494123 SPATA8Q6RVD6 105 aa6.24□□□□□ -1.41
BRCA1-223ENST00000494123 A6NN06 94 aa6.21□□□□□ -1.41
BRCA1-223ENST00000494123 V9GYY9 64 aa6.21□□□□□ -1.41
BRCA1-223ENST00000494123 SMIM26A0A096LP01 95 aa6.19□□□□□ -1.42
BRCA1-223ENST00000494123 A0A0D9SG42 100 aa6.18□□□□□ -1.42
BRCA1-223ENST00000494123 RPS28P62857 69 aaKnown RBP6.18□□□□□ -1.42
BRCA1-223ENST00000494123 KRTAP10-5P60370 271 aa6.17□□□□□ -1.42
BRCA1-223ENST00000494123 Q1T7F1 81 aa6.16□□□□□ -1.42
BRCA1-223ENST00000494123 FCGBPQ9Y6R7 5405 aaPredicted RBP6.15□□□□□ -1.42
BRCA1-223ENST00000494123 PRO2289Q9P1D8 64 aa6.14□□□□□ -1.43
BRCA1-223ENST00000494123 PSPHP1O15172 72 aa6.11□□□□□ -1.43
BRCA1-223ENST00000494123 UQCR11O14957 56 aa6.1□□□□□ -1.43
BRCA1-223ENST00000494123 MT1XP80297 61 aa6.08□□□□□ -1.44
BRCA1-223ENST00000494123 SPINT4Q6UDR6 99 aa6.08□□□□□ -1.44
BRCA1-223ENST00000494123 A8MU10 97 aa6.07□□□□□ -1.44
BRCA1-223ENST00000494123 CAMK2N1Q7Z7J9 78 aa6.07□□□□□ -1.44
BRCA1-223ENST00000494123 KRTAP12-1P59990 96 aa6.03□□□□□ -1.44
BRCA1-223ENST00000494123 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.02□□□□□ -1.45
BRCA1-223ENST00000494123 KRTAP12-2P59991 146 aa6□□□□□ -1.45
BRCA1-223ENST00000494123 MIR22HGQ0VDD5 57 aa6□□□□□ -1.45
BRCA1-223ENST00000494123 MACF1Q9UPN3 7388 aaKnown RBP5.95□□□□□ -1.46
BRCA1-223ENST00000494123 A6NED7 52 aa5.94□□□□□ -1.46
BRCA1-223ENST00000494123 K7ERS5 55 aa5.85□□□□□ -1.47
BRCA1-223ENST00000494123 KRTAP9-7A8MTY7 169 aa5.84□□□□□ -1.47
BRCA1-223ENST00000494123 SYNE2Q8WXH0 6885 aaKnown RBP5.82□□□□□ -1.48
BRCA1-223ENST00000494123 KRTAP10-7P60409 375 aaPredicted RBP5.82□□□□□ -1.48
BRCA1-223ENST00000494123 KRTAP10-12P60413 245 aa5.78□□□□□ -1.48
BRCA1-223ENST00000494123 KRTAP6-3Q3LI67 103 aa5.75□□□□□ -1.49
BRCA1-223ENST00000494123 CDC42SE1Q9NRR8 79 aa5.74□□□□□ -1.49
BRCA1-223ENST00000494123 LOC100996750A0A140TA64 210 aa5.74□□□□□ -1.49
BRCA1-223ENST00000494123 KRTAP4-6Q9BYQ5 205 aa5.74□□□□□ -1.49
BRCA1-223ENST00000494123 C10orf95Q9H7T3 257 aa5.73□□□□□ -1.49
BRCA1-223ENST00000494123 KRTAP8-1Q8IUC2 63 aa5.71□□□□□ -1.5
BRCA1-223ENST00000494123 KRTAP4-8A0A0G2JLE6 195 aa5.7□□□□□ -1.5
BRCA1-223ENST00000494123 KRTAP4-8Q9BYQ9 185 aa5.7□□□□□ -1.5
BRCA1-223ENST00000494123 TNP1P09430 55 aa5.67□□□□□ -1.5
BRCA1-223ENST00000494123 KMT2DO14686 5537 aa5.67□□□□□ -1.5
BRCA1-223ENST00000494123 KRTAP5-9P26371 169 aa5.63□□□□□ -1.51
BRCA1-223ENST00000494123 SPRR2FQ96RM1 72 aa5.6□□□□□ -1.51
BRCA1-223ENST00000494123 BRK1Q8WUW1 75 aa5.56□□□□□ -1.52
BRCA1-223ENST00000494123 KRTAP25-1Q3LHN0 102 aa5.53□□□□□ -1.52
BRCA1-223ENST00000494123 ROMO1P60602 79 aa5.49□□□□□ -1.53
BRCA1-223ENST00000494123 LCE3AQ5TA76 89 aa5.49□□□□□ -1.53
BRCA1-223ENST00000494123 MUC12Q9UKN1 5478 aa5.45□□□□□ -1.54
BRCA1-223ENST00000494123 SPRR2EP22531 72 aa5.43□□□□□ -1.54
BRCA1-223ENST00000494123 SPRR2BP35325 72 aa5.43□□□□□ -1.54
BRCA1-223ENST00000494123 SPRR2AP35326 72 aa5.43□□□□□ -1.54
BRCA1-223ENST00000494123 KRTAP19-7Q3SYF9 63 aa5.42□□□□□ -1.54
BRCA1-223ENST00000494123 KRTAP19-5Q3LI72 72 aa5.41□□□□□ -1.54
BRCA1-223ENST00000494123 NEBP20929 6669 aa5.4□□□□□ -1.55
BRCA1-223ENST00000494123 LCE1AQ5T7P2 110 aa5.37□□□□□ -1.55
BRCA1-223ENST00000494123 MT1EP04732 61 aa5.37□□□□□ -1.55
BRCA1-223ENST00000494123 MDN1Q9NU22 5596 aa5.35□□□□□ -1.55
BRCA1-223ENST00000494123 KRTAP23-1A1A580 65 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 96.7 ms