RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 CHKB-CPT1BH3BT56 60 aa10.84□□□□□ -0.67
SMC4-221ENST00000489573 H1FX-AS1Q4G0G2 97 aa10.84□□□□□ -0.67
SMC4-221ENST00000489573 LCE2BO14633 110 aa10.79□□□□□ -0.68
SMC4-221ENST00000489573 KRTAP19-2Q3LHN2 52 aa10.77□□□□□ -0.68
SMC4-221ENST00000489573 S4R3F8 94 aa10.74□□□□□ -0.69
SMC4-221ENST00000489573 LCA10Q71F78 164 aa10.69□□□□□ -0.7
SMC4-221ENST00000489573 SMIM26A0A096LP01 95 aa10.66□□□□□ -0.7
SMC4-221ENST00000489573 SPTSSBQ8NFR3 76 aa10.66□□□□□ -0.7
SMC4-221ENST00000489573 FAT4Q6V0I7 4981 aa10.61□□□□□ -0.71
SMC4-221ENST00000489573 LCE2CQ5TA81 110 aa10.58□□□□□ -0.72
SMC4-221ENST00000489573 CSAG1Q6PB30 78 aa10.51□□□□□ -0.73
SMC4-221ENST00000489573 Q1T7F1 81 aa10.48□□□□□ -0.73
SMC4-221ENST00000489573 V9GYY9 64 aa10.48□□□□□ -0.73
SMC4-221ENST00000489573 LINC01558Q9Y6Z2 57 aa10.46□□□□□ -0.74
SMC4-221ENST00000489573 LCE2AQ5TA79 106 aaPredicted RBP10.45□□□□□ -0.74
SMC4-221ENST00000489573 FLGP20930 4061 aaPredicted RBP10.39□□□□□ -0.75
SMC4-221ENST00000489573 MT1HP80294 61 aa10.39□□□□□ -0.75
SMC4-221ENST00000489573 A0A1B0GU69 56 aa10.35□□□□□ -0.75
SMC4-221ENST00000489573 PRR15LQ9BU68 103 aa10.35□□□□□ -0.75
SMC4-221ENST00000489573 SEC61GP60059 68 aa10.33□□□□□ -0.76
SMC4-221ENST00000489573 PSPHP1O15172 72 aa10.31□□□□□ -0.76
SMC4-221ENST00000489573 M0R2T5 61 aa10.29□□□□□ -0.76
SMC4-221ENST00000489573 KRTAP9-2Q9BYQ4 174 aa10.29□□□□□ -0.76
SMC4-221ENST00000489573 H0YAA0 97 aa10.26□□□□□ -0.77
SMC4-221ENST00000489573 ADM2Q7Z4H4 148 aa10.23□□□□□ -0.77
SMC4-221ENST00000489573 Q5VV11 94 aa10.22□□□□□ -0.77
SMC4-221ENST00000489573 KRTAP10-6P60371 365 aaPredicted RBP10.19□□□□□ -0.78
SMC4-221ENST00000489573 P0C880 135 aa10.14□□□□□ -0.79
SMC4-221ENST00000489573 A0A1B0GU33 70 aa10.07□□□□□ -0.8
SMC4-221ENST00000489573 A6NED7 52 aa10.01□□□□□ -0.81
SMC4-221ENST00000489573 UQCR11O14957 56 aa10.01□□□□□ -0.81
SMC4-221ENST00000489573 KRTAP9-8Q9BYQ0 159 aa9.97□□□□□ -0.81
SMC4-221ENST00000489573 LORP23490 312 aaPredicted RBP9.97□□□□□ -0.81
SMC4-221ENST00000489573 LOC100996750A0A140TA64 210 aa9.96□□□□□ -0.82
SMC4-221ENST00000489573 KRTAP9-6A0A140TA67 174 aa9.96□□□□□ -0.82
SMC4-221ENST00000489573 KRTAP4-6Q9BYQ5 205 aa9.96□□□□□ -0.82
SMC4-221ENST00000489573 MT2AP02795 61 aa9.95□□□□□ -0.82
SMC4-221ENST00000489573 SPATA8Q6RVD6 105 aa9.9□□□□□ -0.82
SMC4-221ENST00000489573 M0QZ58 72 aa9.89□□□□□ -0.83
SMC4-221ENST00000489573 MT1FP04733 61 aa9.89□□□□□ -0.83
SMC4-221ENST00000489573 KRTAP13-4Q3LI77 160 aa9.89□□□□□ -0.83
SMC4-221ENST00000489573 MIR22HGQ0VDD5 57 aa9.88□□□□□ -0.83
SMC4-221ENST00000489573 R4GN34 69 aa9.88□□□□□ -0.83
SMC4-221ENST00000489573 CRIPTQ9P021 101 aa9.88□□□□□ -0.83
SMC4-221ENST00000489573 FSIP2Q5CZC0 6907 aa9.87□□□□□ -0.83
SMC4-221ENST00000489573 KRTAP10-10P60014 251 aa9.86□□□□□ -0.83
SMC4-221ENST00000489573 CDC42SE1Q9NRR8 79 aa9.8□□□□□ -0.84
SMC4-221ENST00000489573 BRK1Q8WUW1 75 aa9.79□□□□□ -0.84
SMC4-221ENST00000489573 A8MU10 97 aa9.74□□□□□ -0.85
SMC4-221ENST00000489573 A0A0D9SG42 100 aa9.71□□□□□ -0.85
SMC4-221ENST00000489573 CRCT1Q9UGL9 99 aa9.7□□□□□ -0.86
SMC4-221ENST00000489573 LINC01554Q52M75 96 aa9.68□□□□□ -0.86
SMC4-221ENST00000489573 SPRR2GQ9BYE4 73 aa9.68□□□□□ -0.86
SMC4-221ENST00000489573 KRTAP19-1Q8IUB9 90 aa9.66□□□□□ -0.86
SMC4-221ENST00000489573 KRTAP9-3Q9BYQ3 159 aa9.63□□□□□ -0.87
SMC4-221ENST00000489573 A6NN06 94 aa9.52□□□□□ -0.89
SMC4-221ENST00000489573 KRTAP12-1P59990 96 aa9.52□□□□□ -0.89
SMC4-221ENST00000489573 SPINT4Q6UDR6 99 aa9.5□□□□□ -0.89
SMC4-221ENST00000489573 PRO0628Q9UI54 55 aa9.5□□□□□ -0.89
SMC4-221ENST00000489573 K7ERS5 55 aa9.48□□□□□ -0.89
SMC4-221ENST00000489573 KRTAP12-2P59991 146 aa9.48□□□□□ -0.89
SMC4-221ENST00000489573 KRTAP19-8Q3LI54 63 aa9.46□□□□□ -0.9
SMC4-221ENST00000489573 PLAC4Q8WY50 150 aa9.35□□□□□ -0.91
SMC4-221ENST00000489573 MT1BP07438 61 aa9.33□□□□□ -0.92
SMC4-221ENST00000489573 USH2AO75445 5202 aa9.29□□□□□ -0.92
SMC4-221ENST00000489573 SSPOA2VEC9 5147 aa9.26□□□□□ -0.93
SMC4-221ENST00000489573 CAMK2N1Q7Z7J9 78 aa9.25□□□□□ -0.93
SMC4-221ENST00000489573 PMAIP1Q13794 54 aa9.24□□□□□ -0.93
SMC4-221ENST00000489573 ROMO1P60602 79 aa9.05□□□□□ -0.96
SMC4-221ENST00000489573 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.04□□□□□ -0.96
SMC4-221ENST00000489573 KRTAP4-8Q9BYQ9 185 aa9.03□□□□□ -0.96
SMC4-221ENST00000489573 C10orf95Q9H7T3 257 aa9.02□□□□□ -0.97
SMC4-221ENST00000489573 FCGBPQ9Y6R7 5405 aaPredicted RBP9.01□□□□□ -0.97
SMC4-221ENST00000489573 MT1XP80297 61 aa9□□□□□ -0.97
SMC4-221ENST00000489573 KRTAP10-5P60370 271 aa8.98□□□□□ -0.97
SMC4-221ENST00000489573 KRTAP9-7A8MTY7 169 aa8.95□□□□□ -0.98
SMC4-221ENST00000489573 PRO2289Q9P1D8 64 aa8.95□□□□□ -0.98
SMC4-221ENST00000489573 KRTAP19-6Q3LI70 58 aa8.86□□□□□ -0.99
SMC4-221ENST00000489573 KTN1-AS1Q86SY8 53 aa8.82□□□□□ -1
SMC4-221ENST00000489573 MACF1Q9UPN3 7388 aaKnown RBP8.8□□□□□ -1
SMC4-221ENST00000489573 TNP1P09430 55 aa8.78□□□□□ -1
SMC4-221ENST00000489573 KRTAP25-1Q3LHN0 102 aa8.78□□□□□ -1
SMC4-221ENST00000489573 SYNE2Q8WXH0 6885 aaKnown RBP8.73□□□□□ -1.01
SMC4-221ENST00000489573 PRAC1Q96KF2 57 aa8.68□□□□□ -1.02
SMC4-221ENST00000489573 KRTAP10-7P60409 375 aaPredicted RBP8.63□□□□□ -1.03
SMC4-221ENST00000489573 LCE3BQ5TA77 95 aa8.58□□□□□ -1.04
SMC4-221ENST00000489573 KRTAP10-12P60413 245 aa8.53□□□□□ -1.04
SMC4-221ENST00000489573 KRTAP4-12Q9BQ66 201 aa8.52□□□□□ -1.05
SMC4-221ENST00000489573 KRTAP23-1A1A580 65 aa8.47□□□□□ -1.05
SMC4-221ENST00000489573 PP632Q6XCG6 107 aa8.44□□□□□ -1.06
SMC4-221ENST00000489573 KRTAP9-9Q9BYP9 154 aa8.43□□□□□ -1.06
SMC4-221ENST00000489573 KRTAP9-4Q9BYQ2 154 aa8.43□□□□□ -1.06
SMC4-221ENST00000489573 LCE3AQ5TA76 89 aa8.42□□□□□ -1.06
SMC4-221ENST00000489573 KRTAP6-3Q3LI67 103 aa8.38□□□□□ -1.07
SMC4-221ENST00000489573 KRTAP4-8A0A0G2JLE6 195 aa8.35□□□□□ -1.07
SMC4-221ENST00000489573 SVIPQ8NHG7 77 aa8.34□□□□□ -1.07
SMC4-221ENST00000489573 KRTAP8-1Q8IUC2 63 aa8.24□□□□□ -1.09
SMC4-221ENST00000489573 MUC12Q9UKN1 5478 aa8.16□□□□□ -1.1
SMC4-221ENST00000489573 NEBP20929 6669 aa8.13□□□□□ -1.11
SMC4-221ENST00000489573 KMT2DO14686 5537 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms