RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 C9orf92A6NGG3 77 aa6.64□□□□□ -1.35
HDAC6-230ENST00000488543 ACYP2P14621 99 aa6.64□□□□□ -1.35
HDAC6-230ENST00000488543 DMAC1Q96GE9 116 aa6.62□□□□□ -1.35
HDAC6-230ENST00000488543 LINC01554Q52M75 96 aa6.61□□□□□ -1.35
HDAC6-230ENST00000488543 ATP11AUNQ6ZP68 121 aa6.61□□□□□ -1.35
HDAC6-230ENST00000488543 A6NN06 94 aa6.6□□□□□ -1.35
HDAC6-230ENST00000488543 A8MUU9 505 aa6.59□□□□□ -1.35
HDAC6-230ENST00000488543 C20orf166-AS1Q96NR2 134 aa6.59□□□□□ -1.35
HDAC6-230ENST00000488543 HERC1Q15751 4861 aa6.59□□□□□ -1.35
HDAC6-230ENST00000488543 LPAP08519 4548 aa6.57□□□□□ -1.36
HDAC6-230ENST00000488543 C7orf65Q6ZTY9 151 aa6.54□□□□□ -1.36
HDAC6-230ENST00000488543 A0A1B0GU69 56 aa6.53□□□□□ -1.36
HDAC6-230ENST00000488543 ADM2Q7Z4H4 148 aa6.5□□□□□ -1.37
HDAC6-230ENST00000488543 LCE2DQ5TA82 110 aaPredicted RBP6.5□□□□□ -1.37
HDAC6-230ENST00000488543 LRP2P98164 4655 aa6.49□□□□□ -1.37
HDAC6-230ENST00000488543 KRTAP23-1A1A580 65 aa6.47□□□□□ -1.37
HDAC6-230ENST00000488543 XP32Q5T750 250 aa6.47□□□□□ -1.37
HDAC6-230ENST00000488543 TPRXLQ17RH7 258 aa6.43□□□□□ -1.38
HDAC6-230ENST00000488543 RPL37P61927 97 aaKnown RBP6.43□□□□□ -1.38
HDAC6-230ENST00000488543 MIR22HGQ0VDD5 57 aa6.4□□□□□ -1.38
HDAC6-230ENST00000488543 HMCN2Q8NDA2 5059 aa6.4□□□□□ -1.39
HDAC6-230ENST00000488543 SPATA8Q6RVD6 105 aa6.38□□□□□ -1.39
HDAC6-230ENST00000488543 UQCR11O14957 56 aa6.37□□□□□ -1.39
HDAC6-230ENST00000488543 KRTAP3-1Q9BYR8 98 aa6.33□□□□□ -1.4
HDAC6-230ENST00000488543 LUZP6Q538Z0 58 aa6.31□□□□□ -1.4
HDAC6-230ENST00000488543 MUC2Q02817 5179 aa6.29□□□□□ -1.4
HDAC6-230ENST00000488543 H0YAA0 97 aa6.25□□□□□ -1.41
HDAC6-230ENST00000488543 COX6B2Q6YFQ2 88 aa6.24□□□□□ -1.41
HDAC6-230ENST00000488543 UBR4Q5T4S7 5183 aa6.23□□□□□ -1.41
HDAC6-230ENST00000488543 KRTAP4-1Q9BYQ7 146 aa6.21□□□□□ -1.42
HDAC6-230ENST00000488543 CSAG1Q6PB30 78 aa6.19□□□□□ -1.42
HDAC6-230ENST00000488543 RNF213Q63HN8 5207 aa6.18□□□□□ -1.42
HDAC6-230ENST00000488543 A0A1B0GU33 70 aa6.16□□□□□ -1.42
HDAC6-230ENST00000488543 MUC17Q685J3 4493 aa6.16□□□□□ -1.42
HDAC6-230ENST00000488543 H1FX-AS1Q4G0G2 97 aa6.14□□□□□ -1.43
HDAC6-230ENST00000488543 LCE2CQ5TA81 110 aa6.14□□□□□ -1.43
HDAC6-230ENST00000488543 LCE2AQ5TA79 106 aaPredicted RBP6.12□□□□□ -1.43
HDAC6-230ENST00000488543 ROMO1P60602 79 aa6.1□□□□□ -1.43
HDAC6-230ENST00000488543 K7ERS5 55 aa6.09□□□□□ -1.43
HDAC6-230ENST00000488543 CRIPTQ9P021 101 aa6.08□□□□□ -1.44
HDAC6-230ENST00000488543 S4R3F8 94 aa6.03□□□□□ -1.44
HDAC6-230ENST00000488543 KRTAP13-4Q3LI77 160 aa6.02□□□□□ -1.45
HDAC6-230ENST00000488543 A0A0D9SG42 100 aa6.01□□□□□ -1.45
HDAC6-230ENST00000488543 KRTAP10-6P60371 365 aaPredicted RBP5.99□□□□□ -1.45
HDAC6-230ENST00000488543 KRTAP19-2Q3LHN2 52 aa5.99□□□□□ -1.45
HDAC6-230ENST00000488543 CAMK2N1Q7Z7J9 78 aa5.99□□□□□ -1.45
HDAC6-230ENST00000488543 FAT4Q6V0I7 4981 aa5.98□□□□□ -1.45
HDAC6-230ENST00000488543 LCE2BO14633 110 aa5.94□□□□□ -1.46
HDAC6-230ENST00000488543 P0C880 135 aa5.94□□□□□ -1.46
HDAC6-230ENST00000488543 KRTAP25-1Q3LHN0 102 aa5.93□□□□□ -1.46
HDAC6-230ENST00000488543 FLGP20930 4061 aaPredicted RBP5.87□□□□□ -1.47
HDAC6-230ENST00000488543 NDUFAF8A1L188 74 aa5.82□□□□□ -1.48
HDAC6-230ENST00000488543 C10orf95Q9H7T3 257 aa5.81□□□□□ -1.48
HDAC6-230ENST00000488543 KRTAP12-2P59991 146 aa5.8□□□□□ -1.48
HDAC6-230ENST00000488543 MT1HP80294 61 aa5.76□□□□□ -1.49
HDAC6-230ENST00000488543 SPINT4Q6UDR6 99 aa5.75□□□□□ -1.49
HDAC6-230ENST00000488543 KRTAP12-1P59990 96 aa5.71□□□□□ -1.5
HDAC6-230ENST00000488543 M0R2T5 61 aa5.7□□□□□ -1.5
HDAC6-230ENST00000488543 LORP23490 312 aaPredicted RBP5.66□□□□□ -1.5
HDAC6-230ENST00000488543 M0QZ58 72 aa5.6□□□□□ -1.51
HDAC6-230ENST00000488543 KRTAP9-8Q9BYQ0 159 aa5.54□□□□□ -1.52
HDAC6-230ENST00000488543 R4GN34 69 aa5.53□□□□□ -1.52
HDAC6-230ENST00000488543 MT2AP02795 61 aa5.51□□□□□ -1.53
HDAC6-230ENST00000488543 MT1FP04733 61 aa5.5□□□□□ -1.53
HDAC6-230ENST00000488543 KRTAP10-10P60014 251 aa5.47□□□□□ -1.53
HDAC6-230ENST00000488543 KRTAP15-1Q3LI76 137 aa5.43□□□□□ -1.54
HDAC6-230ENST00000488543 KRTAP19-1Q8IUB9 90 aa5.36□□□□□ -1.55
HDAC6-230ENST00000488543 SPRR2GQ9BYE4 73 aa5.35□□□□□ -1.55
HDAC6-230ENST00000488543 KRTAP9-3Q9BYQ3 159 aa5.34□□□□□ -1.56
HDAC6-230ENST00000488543 USH2AO75445 5202 aa5.25□□□□□ -1.57
HDAC6-230ENST00000488543 KRTAP19-8Q3LI54 63 aa5.21□□□□□ -1.57
HDAC6-230ENST00000488543 PRO2289Q9P1D8 64 aa5.21□□□□□ -1.58
HDAC6-230ENST00000488543 FSIP2Q5CZC0 6907 aa5.2□□□□□ -1.58
HDAC6-230ENST00000488543 PLAC4Q8WY50 150 aa5.19□□□□□ -1.58
HDAC6-230ENST00000488543 MT1BP07438 61 aa5.17□□□□□ -1.58
HDAC6-230ENST00000488543 SSPOA2VEC9 5147 aa5.04□□□□□ -1.6
HDAC6-230ENST00000488543 PP632Q6XCG6 107 aa5.02□□□□□ -1.61
HDAC6-230ENST00000488543 TNP1P09430 55 aa5.01□□□□□ -1.61
HDAC6-230ENST00000488543 MT1XP80297 61 aa5□□□□□ -1.61
HDAC6-230ENST00000488543 KRTAP10-5P60370 271 aa5□□□□□ -1.61
HDAC6-230ENST00000488543 KRTAP9-2Q9BYQ4 174 aa4.96□□□□□ -1.62
HDAC6-230ENST00000488543 KRTAP19-6Q3LI70 58 aa4.86□□□□□ -1.63
HDAC6-230ENST00000488543 LCE3AQ5TA76 89 aa4.85□□□□□ -1.63
HDAC6-230ENST00000488543 FCGBPQ9Y6R7 5405 aaPredicted RBP4.84□□□□□ -1.63
HDAC6-230ENST00000488543 KMT2DO14686 5537 aa4.82□□□□□ -1.64
HDAC6-230ENST00000488543 KRTAP10-7P60409 375 aaPredicted RBP4.82□□□□□ -1.64
HDAC6-230ENST00000488543 SPRR5A0A1B0GTR4 108 aa4.75□□□□□ -1.65
HDAC6-230ENST00000488543 CRCT1Q9UGL9 99 aa4.75□□□□□ -1.65
HDAC6-230ENST00000488543 KRTAP10-12P60413 245 aa4.74□□□□□ -1.65
HDAC6-230ENST00000488543 KRTAP4-8A0A0G2JLE6 195 aa4.69□□□□□ -1.66
HDAC6-230ENST00000488543 KRTAP4-8Q9BYQ9 185 aa4.69□□□□□ -1.66
HDAC6-230ENST00000488543 KRTAP8-1Q8IUC2 63 aa4.69□□□□□ -1.66
HDAC6-230ENST00000488543 INE1O15225 51 aa4.67□□□□□ -1.66
HDAC6-230ENST00000488543 MACF1Q9UPN3 7388 aaKnown RBP4.63□□□□□ -1.67
HDAC6-230ENST00000488543 KRTAP12-3P60328 96 aa4.57□□□□□ -1.68
HDAC6-230ENST00000488543 KRTAP9-6A0A140TA67 174 aa4.57□□□□□ -1.68
HDAC6-230ENST00000488543 SYNE2Q8WXH0 6885 aaKnown RBP4.57□□□□□ -1.68
HDAC6-230ENST00000488543 LCE5AQ5TCM9 118 aa4.56□□□□□ -1.68
HDAC6-230ENST00000488543 KRTAP19-5Q3LI72 72 aa4.54□□□□□ -1.68
HDAC6-230ENST00000488543 KRTAP19-7Q3SYF9 63 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 114.4 ms