RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 LINC00208Q96KT6 92 aa8.06□□□□□ -1.12
SCAF11-206ENST00000474828 SCGB1A1P11684 91 aa8.04□□□□□ -1.12
SCAF11-206ENST00000474828 KRTAP9-3Q9BYQ3 159 aa8.02□□□□□ -1.13
SCAF11-206ENST00000474828 KLKP1Q107X0 134 aa8.01□□□□□ -1.13
SCAF11-206ENST00000474828 SMIM20Q8N5G0 67 aa8□□□□□ -1.13
SCAF11-206ENST00000474828 S4R3F8 94 aa8□□□□□ -1.13
SCAF11-206ENST00000474828 FAM236AA0A1B0GUQ0 79 aa7.99□□□□□ -1.13
SCAF11-206ENST00000474828 FAM236BA0A1B0GV22 79 aa7.99□□□□□ -1.13
SCAF11-206ENST00000474828 KRTAP10-10P60014 251 aa7.99□□□□□ -1.13
SCAF11-206ENST00000474828 LCA10Q71F78 164 aa7.99□□□□□ -1.13
SCAF11-206ENST00000474828 KRTAP9-9Q9BYP9 154 aa7.98□□□□□ -1.13
SCAF11-206ENST00000474828 KRTAP9-4Q9BYQ2 154 aa7.98□□□□□ -1.13
SCAF11-206ENST00000474828 TRAV7A0A075B6U4 112 aa7.97□□□□□ -1.13
SCAF11-206ENST00000474828 A8MUN3 132 aa7.96□□□□□ -1.14
SCAF11-206ENST00000474828 CSAG1Q6PB30 78 aa7.93□□□□□ -1.14
SCAF11-206ENST00000474828 USH2AO75445 5202 aa7.89□□□□□ -1.15
SCAF11-206ENST00000474828 KRTAP9-7A8MTY7 169 aa7.88□□□□□ -1.15
SCAF11-206ENST00000474828 DMAC1Q96GE9 116 aa7.84□□□□□ -1.15
SCAF11-206ENST00000474828 KRTAP19-4Q3LI73 84 aa7.83□□□□□ -1.16
SCAF11-206ENST00000474828 SERP2Q8N6R1 65 aa7.8□□□□□ -1.16
SCAF11-206ENST00000474828 KRTAP4-8A0A0G2JLE6 195 aa7.79□□□□□ -1.16
SCAF11-206ENST00000474828 NDUFC1O43677 76 aa7.78□□□□□ -1.16
SCAF11-206ENST00000474828 H0YAA0 97 aa7.77□□□□□ -1.17
SCAF11-206ENST00000474828 SSPOA2VEC9 5147 aa7.76□□□□□ -1.17
SCAF11-206ENST00000474828 SPRR2GQ9BYE4 73 aa7.7□□□□□ -1.18
SCAF11-206ENST00000474828 SNURFQ9Y675 71 aa7.7□□□□□ -1.18
SCAF11-206ENST00000474828 FCGBPQ9Y6R7 5405 aaPredicted RBP7.69□□□□□ -1.18
SCAF11-206ENST00000474828 C20orf197Q8N268 126 aa7.68□□□□□ -1.18
SCAF11-206ENST00000474828 SPANXA2-OT1Q8N9U9 137 aa7.68□□□□□ -1.18
SCAF11-206ENST00000474828 LCE4AQ5TA78 99 aa7.66□□□□□ -1.18
SCAF11-206ENST00000474828 LCE1DQ5T752 114 aa7.65□□□□□ -1.18
SCAF11-206ENST00000474828 CRIPTQ9P021 101 aa7.65□□□□□ -1.18
SCAF11-206ENST00000474828 ACYP2P14621 99 aa7.64□□□□□ -1.19
SCAF11-206ENST00000474828 COX7CP15954 63 aa7.64□□□□□ -1.19
SCAF11-206ENST00000474828 KRTAP19-8Q3LI54 63 aa7.61□□□□□ -1.19
SCAF11-206ENST00000474828 KRTAP19-6Q3LI70 58 aa7.6□□□□□ -1.19
SCAF11-206ENST00000474828 ADM2Q7Z4H4 148 aa7.55□□□□□ -1.2
SCAF11-206ENST00000474828 MT1BP07438 61 aa7.54□□□□□ -1.2
SCAF11-206ENST00000474828 KRTAP4-7Q9BYR0 210 aa7.51□□□□□ -1.21
SCAF11-206ENST00000474828 H7BZZ5 65 aa7.49□□□□□ -1.21
SCAF11-206ENST00000474828 SPTSSBQ8NFR3 76 aa7.48□□□□□ -1.21
SCAF11-206ENST00000474828 CYSTM1Q9H1C7 97 aa7.48□□□□□ -1.21
SCAF11-206ENST00000474828 MACF1Q9UPN3 7388 aaKnown RBP7.47□□□□□ -1.21
SCAF11-206ENST00000474828 Q5VV11 94 aa7.47□□□□□ -1.21
SCAF11-206ENST00000474828 P0C880 135 aa7.46□□□□□ -1.22
SCAF11-206ENST00000474828 ANAPC13Q9BS18 74 aa7.46□□□□□ -1.22
SCAF11-206ENST00000474828 SYNE2Q8WXH0 6885 aaKnown RBP7.42□□□□□ -1.22
SCAF11-206ENST00000474828 CHKB-CPT1BH3BT56 60 aa7.42□□□□□ -1.22
SCAF11-206ENST00000474828 KRTAP4-9Q9BYQ8 210 aa7.4□□□□□ -1.22
SCAF11-206ENST00000474828 COA5Q86WW8 74 aa7.36□□□□□ -1.23
SCAF11-206ENST00000474828 CCDC179H3BU77 68 aa7.33□□□□□ -1.24
SCAF11-206ENST00000474828 R4GN34 69 aa7.33□□□□□ -1.24
SCAF11-206ENST00000474828 KRTAP10-5P60370 271 aa7.3□□□□□ -1.24
SCAF11-206ENST00000474828 KRTAP6-3Q3LI67 103 aa7.29□□□□□ -1.24
SCAF11-206ENST00000474828 M0QZ58 72 aa7.27□□□□□ -1.25
SCAF11-206ENST00000474828 A6NN06 94 aa7.24□□□□□ -1.25
SCAF11-206ENST00000474828 LCE5AQ5TCM9 118 aa7.24□□□□□ -1.25
SCAF11-206ENST00000474828 ATP5EP56381 51 aaPredicted RBP7.19□□□□□ -1.26
SCAF11-206ENST00000474828 KRTAP4-2Q9BYR5 136 aa7.18□□□□□ -1.26
SCAF11-206ENST00000474828 KRTAP4-11Q9BYQ6 195 aa7.17□□□□□ -1.26
SCAF11-206ENST00000474828 PLAC4Q8WY50 150 aa7.15□□□□□ -1.26
SCAF11-206ENST00000474828 MT1XP80297 61 aa7.13□□□□□ -1.27
SCAF11-206ENST00000474828 KRTAP13-4Q3LI77 160 aa7.11□□□□□ -1.27
SCAF11-206ENST00000474828 TMEM258P61165 79 aa7.1□□□□□ -1.27
SCAF11-206ENST00000474828 LINC01554Q52M75 96 aa7.08□□□□□ -1.28
SCAF11-206ENST00000474828 SEC61GP60059 68 aa7.07□□□□□ -1.28
SCAF11-206ENST00000474828 PRO2289Q9P1D8 64 aa7.07□□□□□ -1.28
SCAF11-206ENST00000474828 SERP1Q9Y6X1 66 aa7.06□□□□□ -1.28
SCAF11-206ENST00000474828 NEBP20929 6669 aa7.02□□□□□ -1.29
SCAF11-206ENST00000474828 A0A1B0GU33 70 aa6.98□□□□□ -1.29
SCAF11-206ENST00000474828 A0A1B0GU69 56 aa6.95□□□□□ -1.3
SCAF11-206ENST00000474828 KRTAP12-2P59991 146 aa6.95□□□□□ -1.3
SCAF11-206ENST00000474828 MUC12Q9UKN1 5478 aa6.93□□□□□ -1.3
SCAF11-206ENST00000474828 LINC01558Q9Y6Z2 57 aa6.91□□□□□ -1.3
SCAF11-206ENST00000474828 KRTAP20-1Q3LI63 56 aa6.89□□□□□ -1.31
SCAF11-206ENST00000474828 SPATA8Q6RVD6 105 aa6.89□□□□□ -1.31
SCAF11-206ENST00000474828 KRTAP5-9P26371 169 aa6.86□□□□□ -1.31
SCAF11-206ENST00000474828 PRR15LQ9BU68 103 aa6.82□□□□□ -1.32
SCAF11-206ENST00000474828 KRTAP10-12P60413 245 aa6.81□□□□□ -1.32
SCAF11-206ENST00000474828 KRTAP12-1P59990 96 aa6.8□□□□□ -1.32
SCAF11-206ENST00000474828 A0A0D9SG42 100 aa6.79□□□□□ -1.32
SCAF11-206ENST00000474828 KMT2DO14686 5537 aa6.78□□□□□ -1.32
SCAF11-206ENST00000474828 SMIM26A0A096LP01 95 aa6.78□□□□□ -1.32
SCAF11-206ENST00000474828 KRTAP10-7P60409 375 aaPredicted RBP6.77□□□□□ -1.33
SCAF11-206ENST00000474828 KRTAP23-1A1A580 65 aa6.76□□□□□ -1.33
SCAF11-206ENST00000474828 CAMK2N1Q7Z7J9 78 aa6.74□□□□□ -1.33
SCAF11-206ENST00000474828 MDN1Q9NU22 5596 aa6.71□□□□□ -1.33
SCAF11-206ENST00000474828 PCP4P48539 62 aa6.71□□□□□ -1.34
SCAF11-206ENST00000474828 A8MU10 97 aa6.7□□□□□ -1.34
SCAF11-206ENST00000474828 SPINT4Q6UDR6 99 aa6.68□□□□□ -1.34
SCAF11-206ENST00000474828 Q1T7F1 81 aa6.67□□□□□ -1.34
SCAF11-206ENST00000474828 KRTAP8-1Q8IUC2 63 aa6.66□□□□□ -1.34
SCAF11-206ENST00000474828 V9GYY9 64 aa6.65□□□□□ -1.34
SCAF11-206ENST00000474828 UQCR11O14957 56 aa6.64□□□□□ -1.35
SCAF11-206ENST00000474828 KRTAP2-3P0C7H8 128 aa6.63□□□□□ -1.35
SCAF11-206ENST00000474828 KRTAP2-4Q9BYR9 128 aa6.63□□□□□ -1.35
SCAF11-206ENST00000474828 RPS28P62857 69 aaKnown RBP6.62□□□□□ -1.35
SCAF11-206ENST00000474828 SPRR2FQ96RM1 72 aa6.59□□□□□ -1.35
SCAF11-206ENST00000474828 SPRR2EP22531 72 aa6.56□□□□□ -1.36
SCAF11-206ENST00000474828 SPRR2BP35325 72 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms