RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 BIRC6Q9NR09 4857 aa4.99□□□□□ -1.61
USP39-214ENST00000474572 UQCR11O14957 56 aa4.99□□□□□ -1.61
USP39-214ENST00000474572 KRTAP3-3Q9BYR6 98 aa4.98□□□□□ -1.61
USP39-214ENST00000474572 MIR22HGQ0VDD5 57 aa4.95□□□□□ -1.62
USP39-214ENST00000474572 HERC2O95714 4834 aa4.95□□□□□ -1.62
USP39-214ENST00000474572 A6NN06 94 aa4.94□□□□□ -1.62
USP39-214ENST00000474572 PMAIP1Q13794 54 aa4.93□□□□□ -1.62
USP39-214ENST00000474572 H1FX-AS1Q4G0G2 97 aa4.93□□□□□ -1.62
USP39-214ENST00000474572 S4R3F8 94 aa4.93□□□□□ -1.62
USP39-214ENST00000474572 J3QL48 77 aa4.91□□□□□ -1.62
USP39-214ENST00000474572 ABCA13Q86UQ4 5058 aa4.91□□□□□ -1.62
USP39-214ENST00000474572 LRP2P98164 4655 aa4.9□□□□□ -1.62
USP39-214ENST00000474572 A0A1B0GU33 70 aa4.89□□□□□ -1.63
USP39-214ENST00000474572 SEC61BP60468 96 aaKnown RBP4.89□□□□□ -1.63
USP39-214ENST00000474572 LPAP08519 4548 aa4.88□□□□□ -1.63
USP39-214ENST00000474572 RBM12B-AS1Q9P1G2 102 aa4.88□□□□□ -1.63
USP39-214ENST00000474572 H0YAA0 97 aa4.87□□□□□ -1.63
USP39-214ENST00000474572 KRTAP10-6P60371 365 aaPredicted RBP4.87□□□□□ -1.63
USP39-214ENST00000474572 KTN1-AS1Q86SY8 53 aa4.87□□□□□ -1.63
USP39-214ENST00000474572 MUC17Q685J3 4493 aa4.86□□□□□ -1.63
USP39-214ENST00000474572 KRTAP3-2Q9BYR7 98 aa4.85□□□□□ -1.63
USP39-214ENST00000474572 KRTAP4-1Q9BYQ7 146 aa4.82□□□□□ -1.64
USP39-214ENST00000474572 K7ERS5 55 aa4.79□□□□□ -1.64
USP39-214ENST00000474572 KRTAP19-2Q3LHN2 52 aa4.79□□□□□ -1.64
USP39-214ENST00000474572 CSAG1Q6PB30 78 aa4.77□□□□□ -1.65
USP39-214ENST00000474572 P0C880 135 aa4.75□□□□□ -1.65
USP39-214ENST00000474572 KRTAP13-4Q3LI77 160 aa4.75□□□□□ -1.65
USP39-214ENST00000474572 ADM2Q7Z4H4 148 aa4.73□□□□□ -1.65
USP39-214ENST00000474572 PCLOQ9Y6V0 5065 aa4.68□□□□□ -1.66
USP39-214ENST00000474572 M0QZ58 72 aa4.65□□□□□ -1.67
USP39-214ENST00000474572 HMCN2Q8NDA2 5059 aa4.63□□□□□ -1.67
USP39-214ENST00000474572 HERC1Q15751 4861 aa4.62□□□□□ -1.67
USP39-214ENST00000474572 PRAC1Q96KF2 57 aa4.61□□□□□ -1.67
USP39-214ENST00000474572 A0A0D9SG42 100 aa4.59□□□□□ -1.67
USP39-214ENST00000474572 KRTAP12-1P59990 96 aa4.59□□□□□ -1.67
USP39-214ENST00000474572 KRTAP12-2P59991 146 aa4.56□□□□□ -1.68
USP39-214ENST00000474572 LCE2CQ5TA81 110 aa4.55□□□□□ -1.68
USP39-214ENST00000474572 LORP23490 312 aaPredicted RBP4.54□□□□□ -1.68
USP39-214ENST00000474572 ROMO1P60602 79 aa4.54□□□□□ -1.68
USP39-214ENST00000474572 R4GN34 69 aa4.52□□□□□ -1.69
USP39-214ENST00000474572 FLGP20930 4061 aaPredicted RBP4.5□□□□□ -1.69
USP39-214ENST00000474572 KRTAP25-1Q3LHN0 102 aa4.48□□□□□ -1.69
USP39-214ENST00000474572 SPINT4Q6UDR6 99 aa4.48□□□□□ -1.69
USP39-214ENST00000474572 CRIPTQ9P021 101 aa4.46□□□□□ -1.7
USP39-214ENST00000474572 LINC01554Q52M75 96 aa4.45□□□□□ -1.7
USP39-214ENST00000474572 MT1HP80294 61 aa4.42□□□□□ -1.7
USP39-214ENST00000474572 MUC2Q02817 5179 aa4.41□□□□□ -1.7
USP39-214ENST00000474572 RNF213Q63HN8 5207 aa4.38□□□□□ -1.71
USP39-214ENST00000474572 SPRR2GQ9BYE4 73 aa4.34□□□□□ -1.71
USP39-214ENST00000474572 C10orf95Q9H7T3 257 aa4.32□□□□□ -1.72
USP39-214ENST00000474572 KRTAP19-1Q8IUB9 90 aa4.31□□□□□ -1.72
USP39-214ENST00000474572 MT2AP02795 61 aa4.3□□□□□ -1.72
USP39-214ENST00000474572 KRTAP9-8Q9BYQ0 159 aa4.3□□□□□ -1.72
USP39-214ENST00000474572 UBR4Q5T4S7 5183 aa4.29□□□□□ -1.72
USP39-214ENST00000474572 M0R2T5 61 aa4.29□□□□□ -1.72
USP39-214ENST00000474572 MT1FP04733 61 aa4.28□□□□□ -1.72
USP39-214ENST00000474572 FAT4Q6V0I7 4981 aa4.26□□□□□ -1.73
USP39-214ENST00000474572 CAMK2N1Q7Z7J9 78 aa4.25□□□□□ -1.73
USP39-214ENST00000474572 KRTAP10-10P60014 251 aa4.21□□□□□ -1.74
USP39-214ENST00000474572 KRTAP19-8Q3LI54 63 aa4.21□□□□□ -1.74
USP39-214ENST00000474572 PP632Q6XCG6 107 aa4.2□□□□□ -1.74
USP39-214ENST00000474572 PLAC4Q8WY50 150 aa4.16□□□□□ -1.74
USP39-214ENST00000474572 KRTAP9-3Q9BYQ3 159 aa4.14□□□□□ -1.75
USP39-214ENST00000474572 KRTAP23-1A1A580 65 aa4.13□□□□□ -1.75
USP39-214ENST00000474572 MT1BP07438 61 aa4.13□□□□□ -1.75
USP39-214ENST00000474572 LCE2AQ5TA79 106 aaPredicted RBP4.12□□□□□ -1.75
USP39-214ENST00000474572 TNP1P09430 55 aa4.11□□□□□ -1.75
USP39-214ENST00000474572 KRTAP15-1Q3LI76 137 aa4.04□□□□□ -1.76
USP39-214ENST00000474572 KRTAP10-5P60370 271 aa4.03□□□□□ -1.76
USP39-214ENST00000474572 MT1XP80297 61 aa4.02□□□□□ -1.77
USP39-214ENST00000474572 LCE2BO14633 110 aa3.97□□□□□ -1.77
USP39-214ENST00000474572 LCE3AQ5TA76 89 aa3.92□□□□□ -1.78
USP39-214ENST00000474572 KRTAP8-1Q8IUC2 63 aa3.9□□□□□ -1.79
USP39-214ENST00000474572 PRO2289Q9P1D8 64 aa3.9□□□□□ -1.79
USP39-214ENST00000474572 KRTAP10-7P60409 375 aaPredicted RBP3.86□□□□□ -1.79
USP39-214ENST00000474572 KRTAP10-12P60413 245 aa3.86□□□□□ -1.79
USP39-214ENST00000474572 LUZP6Q538Z0 58 aa3.83□□□□□ -1.8
USP39-214ENST00000474572 SPRR5A0A1B0GTR4 108 aa3.82□□□□□ -1.8
USP39-214ENST00000474572 USH2AO75445 5202 aa3.75□□□□□ -1.81
USP39-214ENST00000474572 NDUFAF8A1L188 74 aa3.75□□□□□ -1.81
USP39-214ENST00000474572 KRTAP12-3P60328 96 aa3.75□□□□□ -1.81
USP39-214ENST00000474572 H3BS24 57 aa3.73□□□□□ -1.81
USP39-214ENST00000474572 KRTAP19-6Q3LI70 58 aa3.7□□□□□ -1.82
USP39-214ENST00000474572 KRTAP19-5Q3LI72 72 aa3.66□□□□□ -1.82
USP39-214ENST00000474572 LCE2DQ5TA82 110 aaPredicted RBP3.66□□□□□ -1.82
USP39-214ENST00000474572 KRTAP4-8A0A0G2JLE6 195 aa3.64□□□□□ -1.83
USP39-214ENST00000474572 KRTAP4-8Q9BYQ9 185 aa3.64□□□□□ -1.83
USP39-214ENST00000474572 SSPOA2VEC9 5147 aa3.63□□□□□ -1.83
USP39-214ENST00000474572 KRTAP19-4Q3LI73 84 aa3.61□□□□□ -1.83
USP39-214ENST00000474572 KRTAP19-7Q3SYF9 63 aa3.6□□□□□ -1.83
USP39-214ENST00000474572 A0A0A0MQY5 61 aa3.53□□□□□ -1.84
USP39-214ENST00000474572 LCE3CQ5T5A8 94 aa3.53□□□□□ -1.84
USP39-214ENST00000474572 MT1EP04732 61 aa3.51□□□□□ -1.85
USP39-214ENST00000474572 MT1LQ93083 61 aa3.48□□□□□ -1.85
USP39-214ENST00000474572 KMT2DO14686 5537 aa3.48□□□□□ -1.85
USP39-214ENST00000474572 KRTAP9-2Q9BYQ4 174 aa3.42□□□□□ -1.86
USP39-214ENST00000474572 FCGBPQ9Y6R7 5405 aaPredicted RBP3.37□□□□□ -1.87
USP39-214ENST00000474572 KRTAP9-6A8MVA2 160 aa3.37□□□□□ -1.87
USP39-214ENST00000474572 KRTAP4-7Q9BYR0 210 aa3.36□□□□□ -1.87
USP39-214ENST00000474572 KRTAP19-3Q7Z4W3 81 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 167.6 ms