RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 KIF14Q15058 1648 aa-0.91□□□□□ -2.56
SCN1A-205ENST00000473295 URB2Q14146 1524 aaKnown RBP-0.91□□□□□ -2.56
SCN1A-205ENST00000473295 CNTLNQ9NXG0 1405 aa-0.91□□□□□ -2.56
SCN1A-205ENST00000473295 MKI67P46013 3256 aaKnown RBP-0.92□□□□□ -2.56
SCN1A-205ENST00000473295 UQCRHLA0A096LP55 91 aa-0.92□□□□□ -2.56
SCN1A-205ENST00000473295 HMGN1P05114 100 aa-0.92□□□□□ -2.56
SCN1A-205ENST00000473295 IFI27P40305 119 aaPredicted RBP-0.92□□□□□ -2.56
SCN1A-205ENST00000473295 KRTDAPP60985 99 aa-0.92□□□□□ -2.56
SCN1A-205ENST00000473295 TFF3Q07654 80 aa-0.92□□□□□ -2.56
SCN1A-205ENST00000473295 PYY3Q5JQD4 70 aa-0.92□□□□□ -2.56
SCN1A-205ENST00000473295 ZNF720Q7Z2F6 126 aa-0.92□□□□□ -2.56
SCN1A-205ENST00000473295 COPS9Q8WXC6 57 aa-0.92□□□□□ -2.56
SCN1A-205ENST00000473295 DPY30Q9C005 99 aa-0.92□□□□□ -2.56
SCN1A-205ENST00000473295 HILPDAQ9Y5L2 63 aa-0.92□□□□□ -2.56
SCN1A-205ENST00000473295 C3P01024 1663 aa-0.92□□□□□ -2.56
SCN1A-205ENST00000473295 LOC400499M0QZD8 3231 aa-0.92□□□□□ -2.56
SCN1A-205ENST00000473295 TIAM1Q13009 1591 aa-0.92□□□□□ -2.56
SCN1A-205ENST00000473295 KDM5DQ9BY66 1539 aa-0.93□□□□□ -2.56
SCN1A-205ENST00000473295 IGIPA6NJ69 53 aa-0.93□□□□□ -2.56
SCN1A-205ENST00000473295 H3BUT2 72 aa-0.93□□□□□ -2.56
SCN1A-205ENST00000473295 BVES-AS1Q5T3Y7 98 aa-0.93□□□□□ -2.56
SCN1A-205ENST00000473295 WFDC10BQ8IUB3 73 aa-0.93□□□□□ -2.56
SCN1A-205ENST00000473295 LINC00308Q8TCZ7 52 aa-0.93□□□□□ -2.56
SCN1A-205ENST00000473295 S100A16Q96FQ6 103 aaKnown RBP-0.93□□□□□ -2.56
SCN1A-205ENST00000473295 NRXN3Q9Y4C0 1643 aa-0.93□□□□□ -2.56
SCN1A-205ENST00000473295 PPLO60437 1756 aa-0.93□□□□□ -2.56
SCN1A-205ENST00000473295 NFAT5O94916 1531 aa-0.94□□□□□ -2.56
SCN1A-205ENST00000473295 LMTK2Q8IWU2 1503 aa-0.94□□□□□ -2.56
SCN1A-205ENST00000473295 VPS8Q8N3P4 1428 aa-0.94□□□□□ -2.56
SCN1A-205ENST00000473295 LINC00032P0C843 101 aa-0.94□□□□□ -2.56
SCN1A-205ENST00000473295 SNRPFP62306 86 aaKnown RBP-0.94□□□□□ -2.56
SCN1A-205ENST00000473295 S100A12P80511 92 aa-0.94□□□□□ -2.56
SCN1A-205ENST00000473295 GTF2H5Q6ZYL4 71 aa-0.94□□□□□ -2.56
SCN1A-205ENST00000473295 NOP10Q9NPE3 64 aaKnown RBP-0.94□□□□□ -2.56
SCN1A-205ENST00000473295 SCRIBQ14160 1630 aa-0.94□□□□□ -2.56
SCN1A-205ENST00000473295 IQGAP3Q86VI3 1631 aa-0.94□□□□□ -2.56
SCN1A-205ENST00000473295 MADDQ8WXG6 1647 aa-0.94□□□□□ -2.56
SCN1A-205ENST00000473295 AGLP35573 1532 aa-0.94□□□□□ -2.56
SCN1A-205ENST00000473295 ABCA8O94911 1581 aa-0.95□□□□□ -2.56
SCN1A-205ENST00000473295 USP34Q70CQ2 3546 aa-0.95□□□□□ -2.56
SCN1A-205ENST00000473295 EEA1Q15075 1411 aa-0.95□□□□□ -2.56
SCN1A-205ENST00000473295 ABCA9Q8IUA7 1624 aa-0.95□□□□□ -2.56
SCN1A-205ENST00000473295 PIGBOS1A0A0B4J2F0 54 aa-0.95□□□□□ -2.56
SCN1A-205ENST00000473295 H3BUA1 57 aa-0.95□□□□□ -2.56
SCN1A-205ENST00000473295 M0R143 59 aa-0.95□□□□□ -2.56
SCN1A-205ENST00000473295 CYB5AP00167 134 aa-0.95□□□□□ -2.56
SCN1A-205ENST00000473295 RPL38P63173 70 aaKnown RBP-0.95□□□□□ -2.56
SCN1A-205ENST00000473295 SARNPP82979 210 aaKnown RBP-0.95□□□□□ -2.56
SCN1A-205ENST00000473295 PEA15Q15121 130 aa-0.95□□□□□ -2.56
SCN1A-205ENST00000473295 C18orf32Q8TCD1 76 aa-0.95□□□□□ -2.56
SCN1A-205ENST00000473295 ABCC3O15438 1527 aa-0.95□□□□□ -2.56
SCN1A-205ENST00000473295 PREX2Q70Z35 1606 aa-0.96□□□□□ -2.56
SCN1A-205ENST00000473295 RRBP1Q9P2E9 1410 aaKnown RBP-0.96□□□□□ -2.56
SCN1A-205ENST00000473295 ALS2Q96Q42 1657 aa-0.96□□□□□ -2.56
SCN1A-205ENST00000473295 A0A087WXM4 84 aa-0.96□□□□□ -2.56
SCN1A-205ENST00000473295 EFCAB10A6NFE3 127 aa-0.96□□□□□ -2.56
SCN1A-205ENST00000473295 M0R1W7 72 aa-0.96□□□□□ -2.56
SCN1A-205ENST00000473295 NDUFB1O75438 58 aa-0.96□□□□□ -2.56
SCN1A-205ENST00000473295 GYPAP02724 150 aa-0.96□□□□□ -2.56
SCN1A-205ENST00000473295 ACBD7Q8N6N7 88 aa-0.96□□□□□ -2.56
SCN1A-205ENST00000473295 TSC22D3Q99576 134 aa-0.96□□□□□ -2.56
SCN1A-205ENST00000473295 UBL5Q9BZL1 73 aa-0.96□□□□□ -2.56
SCN1A-205ENST00000473295 BRCA2P51587 3418 aa-0.96□□□□□ -2.56
SCN1A-205ENST00000473295 ASPMQ8IZT6 3477 aa-0.96□□□□□ -2.56
SCN1A-205ENST00000473295 EFCAB6Q5THR3 1501 aa-0.96□□□□□ -2.56
SCN1A-205ENST00000473295 VCANP13611 3396 aa-0.96□□□□□ -2.56
SCN1A-205ENST00000473295 SYCP2Q9BX26 1530 aa-0.97□□□□□ -2.56
SCN1A-205ENST00000473295 LINC01549A6NIU2 74 aa-0.97□□□□□ -2.56
SCN1A-205ENST00000473295 S100PP25815 95 aa-0.97□□□□□ -2.56
SCN1A-205ENST00000473295 PKIAP61925 76 aa-0.97□□□□□ -2.56
SCN1A-205ENST00000473295 DEFB114Q30KQ6 69 aa-0.97□□□□□ -2.56
SCN1A-205ENST00000473295 THOC2Q8NI27 1593 aaKnown RBP-0.97□□□□□ -2.56
SCN1A-205ENST00000473295 H3BVH4 76 aa-0.98□□□□□ -2.57
SCN1A-205ENST00000473295 ATP5EP2Q5VTU8 51 aa-0.98□□□□□ -2.57
SCN1A-205ENST00000473295 ST20Q9HBF5 79 aa-0.98□□□□□ -2.57
SCN1A-205ENST00000473295 ABCA6Q8N139 1617 aa-0.98□□□□□ -2.57
SCN1A-205ENST00000473295 HFM1A2PYH4 1435 aa-0.98□□□□□ -2.57
SCN1A-205ENST00000473295 DCAF1Q9Y4B6 1507 aa-0.99□□□□□ -2.57
SCN1A-205ENST00000473295 CFAP74Q9C0B2 1584 aa-0.99□□□□□ -2.57
SCN1A-205ENST00000473295 MROH1Q8NDA8 1641 aa-0.99□□□□□ -2.57
SCN1A-205ENST00000473295 CCDC180Q9P1Z9 1646 aa-0.99□□□□□ -2.57
SCN1A-205ENST00000473295 XIRP2A4UGR9 3374 aa-0.99□□□□□ -2.57
SCN1A-205ENST00000473295 SMIM27A0A1W2PRY6 76 aa-0.99□□□□□ -2.57
SCN1A-205ENST00000473295 S100A8P05109 93 aa-0.99□□□□□ -2.57
SCN1A-205ENST00000473295 UACAQ9BZF9 1416 aa-0.99□□□□□ -2.57
SCN1A-205ENST00000473295 TTTY10Q9BZA0 68 aa-1□□□□□ -2.57
SCN1A-205ENST00000473295 ANKARQ7Z5J8 1434 aa-1□□□□□ -2.57
SCN1A-205ENST00000473295 IQGAP1P46940 1657 aa-1□□□□□ -2.57
SCN1A-205ENST00000473295 A0A096LNI7 61 aa-1.01□□□□□ -2.57
SCN1A-205ENST00000473295 MRPL33O75394 65 aaKnown RBP-1.01□□□□□ -2.57
SCN1A-205ENST00000473295 PEG3Q9GZU2 1588 aa-1.01□□□□□ -2.57
SCN1A-205ENST00000473295 CDH23Q9H251 3354 aa-1.02□□□□□ -2.57
SCN1A-205ENST00000473295 PVALEFA0A1B0GWK0 134 aa-1.02□□□□□ -2.57
SCN1A-205ENST00000473295 SMIM11AP58511 58 aa-1.02□□□□□ -2.57
SCN1A-205ENST00000473295 DDX60Q8IY21 1712 aaKnown RBP-1.02□□□□□ -2.57
SCN1A-205ENST00000473295 UGGT1Q9NYU2 1555 aa-1.02□□□□□ -2.57
SCN1A-205ENST00000473295 ABCC1P33527 1531 aa-1.03□□□□□ -2.57
SCN1A-205ENST00000473295 DUOX2Q9NRD8 1548 aa-1.03□□□□□ -2.57
SCN1A-205ENST00000473295 UGGT2Q9NYU1 1516 aa-1.03□□□□□ -2.57
SCN1A-205ENST00000473295 ATXN8Q156A1 80 aa-1.03□□□□□ -2.57
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms