RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 KRTAP10-5P60370 271 aa2.66□□□□□ -1.98
SF3B1-208ENST00000470268 RPS29P62273 56 aaKnown RBP2.66□□□□□ -1.98
SF3B1-208ENST00000470268 RETNLBQ9BQ08 111 aa2.66□□□□□ -1.98
SF3B1-208ENST00000470268 DMBT1Q9UGM3 2413 aaPredicted RBP2.66□□□□□ -1.98
SF3B1-208ENST00000470268 CXCL6P80162 114 aa2.66□□□□□ -1.98
SF3B1-208ENST00000470268 PSPHP1O15172 72 aa2.65□□□□□ -1.99
SF3B1-208ENST00000470268 TMEM254Q8TBM7 123 aa2.65□□□□□ -1.99
SF3B1-208ENST00000470268 Q96NJ1 140 aa2.65□□□□□ -1.99
SF3B1-208ENST00000470268 IGHV6-1A0A0B4J1U7 121 aa2.64□□□□□ -1.99
SF3B1-208ENST00000470268 ASB16-AS1Q495Z4 193 aa2.64□□□□□ -1.99
SF3B1-208ENST00000470268 LIMD2Q9BT23 127 aa2.64□□□□□ -1.99
SF3B1-208ENST00000470268 LINC00472Q9H8W2 130 aa2.64□□□□□ -1.99
SF3B1-208ENST00000470268 HMCN2Q8NDA2 5059 aa2.63□□□□□ -1.99
SF3B1-208ENST00000470268 A0A1B0GW54 56 aa2.63□□□□□ -1.99
SF3B1-208ENST00000470268 LPAP08519 4548 aa2.63□□□□□ -1.99
SF3B1-208ENST00000470268 hDV103S1A0JD37 113 aa2.62□□□□□ -1.99
SF3B1-208ENST00000470268 C7orf65Q6ZTY9 151 aa2.62□□□□□ -1.99
SF3B1-208ENST00000470268 WFDC13Q8IUB5 93 aa2.62□□□□□ -1.99
SF3B1-208ENST00000470268 Q1T7F1 81 aa2.61□□□□□ -1.99
SF3B1-208ENST00000470268 LINC01554Q52M75 96 aa2.61□□□□□ -1.99
SF3B1-208ENST00000470268 PRR4Q16378 134 aa2.61□□□□□ -1.99
SF3B1-208ENST00000470268 KRTAP9-6A8MVA2 160 aa2.59□□□□□ -1.99
SF3B1-208ENST00000470268 TRAV22A0A0B4J277 110 aa2.59□□□□□ -2
SF3B1-208ENST00000470268 HCG22E2RYF7 251 aa2.59□□□□□ -2
SF3B1-208ENST00000470268 KRTAP13-3Q3SY46 172 aa2.59□□□□□ -2
SF3B1-208ENST00000470268 C1orf64Q8NEQ6 169 aa2.59□□□□□ -2
SF3B1-208ENST00000470268 LRP2P98164 4655 aa2.58□□□□□ -2
SF3B1-208ENST00000470268 C9orf92A6NGG3 77 aa2.58□□□□□ -2
SF3B1-208ENST00000470268 A8MWP4 228 aa2.58□□□□□ -2
SF3B1-208ENST00000470268 MMP24-AS1A0A0U1RRL7 71 aa2.58□□□□□ -2
SF3B1-208ENST00000470268 ATP11AUNQ6ZP68 121 aa2.58□□□□□ -2
SF3B1-208ENST00000470268 A0A1B0GVX0 72 aa2.57□□□□□ -2
SF3B1-208ENST00000470268 A6NN06 94 aa2.57□□□□□ -2
SF3B1-208ENST00000470268 TPRXLQ17RH7 258 aa2.57□□□□□ -2
SF3B1-208ENST00000470268 CASC2Q6XLA1 102 aa2.57□□□□□ -2
SF3B1-208ENST00000470268 ZCCHC13Q8WW36 166 aaKnown RBP2.56□□□□□ -2
SF3B1-208ENST00000470268 UBR4Q5T4S7 5183 aa2.56□□□□□ -2
SF3B1-208ENST00000470268 A8MU10 97 aa2.56□□□□□ -2
SF3B1-208ENST00000470268 Q5VV11 94 aa2.56□□□□□ -2
SF3B1-208ENST00000470268 CYP4F30PQ9H0H9 118 aa2.56□□□□□ -2
SF3B1-208ENST00000470268 NDUFB1O75438 58 aa2.55□□□□□ -2
SF3B1-208ENST00000470268 C8orf17Q9NRJ1 99 aa2.55□□□□□ -2
SF3B1-208ENST00000470268 CHKB-CPT1BH3BT56 60 aa2.54□□□□□ -2
SF3B1-208ENST00000470268 LCE1FQ5T754 118 aa2.52□□□□□ -2.01
SF3B1-208ENST00000470268 SPTSSBQ8NFR3 76 aa2.52□□□□□ -2.01
SF3B1-208ENST00000470268 C20orf166-AS1Q96NR2 134 aa2.52□□□□□ -2.01
SF3B1-208ENST00000470268 MUC2Q02817 5179 aa2.52□□□□□ -2.01
SF3B1-208ENST00000470268 Q5W150 140 aa2.52□□□□□ -2.01
SF3B1-208ENST00000470268 LINC00208Q96KT6 92 aa2.52□□□□□ -2.01
SF3B1-208ENST00000470268 PRR15LQ9BU68 103 aa2.52□□□□□ -2.01
SF3B1-208ENST00000470268 A8MUU9 505 aa2.51□□□□□ -2.01
SF3B1-208ENST00000470268 H0Y9P7 68 aa2.51□□□□□ -2.01
SF3B1-208ENST00000470268 RPL37P61927 97 aaKnown RBP2.51□□□□□ -2.01
SF3B1-208ENST00000470268 RNF213Q63HN8 5207 aa2.51□□□□□ -2.01
SF3B1-208ENST00000470268 MRPL34Q9BQ48 92 aaKnown RBP2.51□□□□□ -2.01
SF3B1-208ENST00000470268 MUC17Q685J3 4493 aa2.5□□□□□ -2.01
SF3B1-208ENST00000470268 A6NED7 52 aa2.49□□□□□ -2.01
SF3B1-208ENST00000470268 PCOTHQ58A44 107 aa2.49□□□□□ -2.01
SF3B1-208ENST00000470268 KRTAP4-1Q9BYQ7 146 aa2.49□□□□□ -2.01
SF3B1-208ENST00000470268 SPANXA2-OT1Q8N9U9 137 aa2.48□□□□□ -2.01
SF3B1-208ENST00000470268 CDC42SE1Q9NRR8 79 aa2.48□□□□□ -2.01
SF3B1-208ENST00000470268 LOC101927531A0A1B0GV80 90 aa2.47□□□□□ -2.01
SF3B1-208ENST00000470268 KRTAP10-12P60413 245 aa2.47□□□□□ -2.01
SF3B1-208ENST00000470268 H3BPC8 53 aa2.46□□□□□ -2.02
SF3B1-208ENST00000470268 COA5Q86WW8 74 aa2.46□□□□□ -2.02
SF3B1-208ENST00000470268 TP53AIP1Q9HCN2 124 aa2.46□□□□□ -2.02
SF3B1-208ENST00000470268 LINC01558Q9Y6Z2 57 aa2.44□□□□□ -2.02
SF3B1-208ENST00000470268 ADM2Q7Z4H4 148 aa2.44□□□□□ -2.02
SF3B1-208ENST00000470268 SPINK7P58062 85 aa2.43□□□□□ -2.02
SF3B1-208ENST00000470268 ROMO1P60602 79 aa2.42□□□□□ -2.02
SF3B1-208ENST00000470268 FAT4Q6V0I7 4981 aa2.42□□□□□ -2.02
SF3B1-208ENST00000470268 HRES1P13985 223 aa2.41□□□□□ -2.02
SF3B1-208ENST00000470268 KRTAP19-2Q3LHN2 52 aa2.41□□□□□ -2.02
SF3B1-208ENST00000470268 LUZP6Q538Z0 58 aa2.41□□□□□ -2.02
SF3B1-208ENST00000470268 KRTAP5-2Q701N4 177 aa2.39□□□□□ -2.03
SF3B1-208ENST00000470268 K7ERS5 55 aa2.38□□□□□ -2.03
SF3B1-208ENST00000470268 KRTAP4-3Q9BYR4 195 aa2.36□□□□□ -2.03
SF3B1-208ENST00000470268 DMAC1Q96GE9 116 aa2.35□□□□□ -2.03
SF3B1-208ENST00000470268 LCE3CQ5T5A8 94 aa2.34□□□□□ -2.03
SF3B1-208ENST00000470268 OBSCNQ5VST9 7968 aa2.34□□□□□ -2.03
SF3B1-208ENST00000470268 MIR22HGQ0VDD5 57 aa2.34□□□□□ -2.04
SF3B1-208ENST00000470268 COX6B2Q6YFQ2 88 aa2.34□□□□□ -2.04
SF3B1-208ENST00000470268 SPATA8Q6RVD6 105 aa2.33□□□□□ -2.04
SF3B1-208ENST00000470268 FLGP20930 4061 aaPredicted RBP2.33□□□□□ -2.04
SF3B1-208ENST00000470268 MT1HP80294 61 aa2.32□□□□□ -2.04
SF3B1-208ENST00000470268 CSAG1Q6PB30 78 aa2.32□□□□□ -2.04
SF3B1-208ENST00000470268 CAMK2N1Q7Z7J9 78 aa2.32□□□□□ -2.04
SF3B1-208ENST00000470268 P0C880 135 aa2.32□□□□□ -2.04
SF3B1-208ENST00000470268 ACYP2P14621 99 aa2.32□□□□□ -2.04
SF3B1-208ENST00000470268 H1FX-AS1Q4G0G2 97 aa2.3□□□□□ -2.04
SF3B1-208ENST00000470268 A0A1B0GU69 56 aa2.3□□□□□ -2.04
SF3B1-208ENST00000470268 UQCR11O14957 56 aa2.28□□□□□ -2.04
SF3B1-208ENST00000470268 M0R2T5 61 aa2.26□□□□□ -2.05
SF3B1-208ENST00000470268 S4R3F8 94 aa2.26□□□□□ -2.05
SF3B1-208ENST00000470268 KRTAP25-1Q3LHN0 102 aa2.24□□□□□ -2.05
SF3B1-208ENST00000470268 MT2AP02795 61 aa2.21□□□□□ -2.06
SF3B1-208ENST00000470268 MT1FP04733 61 aa2.2□□□□□ -2.06
SF3B1-208ENST00000470268 LCE3AQ5TA76 89 aa2.18□□□□□ -2.06
SF3B1-208ENST00000470268 H0YAA0 97 aa2.18□□□□□ -2.06
SF3B1-208ENST00000470268 KRTAP13-4Q3LI77 160 aa2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 117.2 ms