RNA–Protein interactions for RNA: ENST00000470241.2

SMC1A-206, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 838 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-206ENST00000470241 MT1FP04733 61 aa5□□□□□ -1.61
SMC1A-206ENST00000470241 CSAG1Q6PB30 78 aa4.99□□□□□ -1.61
SMC1A-206ENST00000470241 ANAPC13Q9BS18 74 aa4.98□□□□□ -1.61
SMC1A-206ENST00000470241 SPANXA2-OT1Q8N9U9 137 aa4.96□□□□□ -1.62
SMC1A-206ENST00000470241 KRTAP9-2Q9BYQ4 174 aa4.96□□□□□ -1.62
SMC1A-206ENST00000470241 NDUFC1O43677 76 aa4.95□□□□□ -1.62
SMC1A-206ENST00000470241 KRTAP10-10P60014 251 aa4.95□□□□□ -1.62
SMC1A-206ENST00000470241 CYSTM1Q9H1C7 97 aa4.95□□□□□ -1.62
SMC1A-206ENST00000470241 ACYP2P14621 99 aa4.92□□□□□ -1.62
SMC1A-206ENST00000470241 CCDC179H3BU77 68 aa4.91□□□□□ -1.62
SMC1A-206ENST00000470241 H7BZZ5 65 aa4.91□□□□□ -1.62
SMC1A-206ENST00000470241 KRTAP9-3Q9BYQ3 159 aa4.91□□□□□ -1.62
SMC1A-206ENST00000470241 H0YAA0 97 aa4.85□□□□□ -1.63
SMC1A-206ENST00000470241 CHKB-CPT1BH3BT56 60 aa4.83□□□□□ -1.64
SMC1A-206ENST00000470241 LCE2BO14633 110 aa4.83□□□□□ -1.64
SMC1A-206ENST00000470241 USH2AO75445 5202 aa4.81□□□□□ -1.64
SMC1A-206ENST00000470241 ADM2Q7Z4H4 148 aa4.81□□□□□ -1.64
SMC1A-206ENST00000470241 COA5Q86WW8 74 aa4.81□□□□□ -1.64
SMC1A-206ENST00000470241 SPTSSBQ8NFR3 76 aa4.79□□□□□ -1.64
SMC1A-206ENST00000470241 KRTAP19-1Q8IUB9 90 aa4.78□□□□□ -1.64
SMC1A-206ENST00000470241 KRTAP3-2Q9BYR7 98 aa4.77□□□□□ -1.65
SMC1A-206ENST00000470241 SPRR2GQ9BYE4 73 aa4.76□□□□□ -1.65
SMC1A-206ENST00000470241 P0C880 135 aa4.75□□□□□ -1.65
SMC1A-206ENST00000470241 CRIPTQ9P021 101 aa4.75□□□□□ -1.65
SMC1A-206ENST00000470241 FSIP2Q5CZC0 6907 aa4.73□□□□□ -1.65
SMC1A-206ENST00000470241 ATP5EP56381 51 aaPredicted RBP4.73□□□□□ -1.65
SMC1A-206ENST00000470241 CRCT1Q9UGL9 99 aa4.73□□□□□ -1.65
SMC1A-206ENST00000470241 SSPOA2VEC9 5147 aa4.73□□□□□ -1.65
SMC1A-206ENST00000470241 KRTAP9-6A0A140TA67 174 aa4.71□□□□□ -1.66
SMC1A-206ENST00000470241 TMEM258P61165 79 aa4.71□□□□□ -1.66
SMC1A-206ENST00000470241 KRTAP19-8Q3LI54 63 aa4.69□□□□□ -1.66
SMC1A-206ENST00000470241 MT1BP07438 61 aa4.66□□□□□ -1.66
SMC1A-206ENST00000470241 Q5VV11 94 aa4.64□□□□□ -1.67
SMC1A-206ENST00000470241 R4GN34 69 aa4.64□□□□□ -1.67
SMC1A-206ENST00000470241 M0QZ58 72 aa4.63□□□□□ -1.67
SMC1A-206ENST00000470241 PCP4P48539 62 aa4.63□□□□□ -1.67
SMC1A-206ENST00000470241 KRTAP19-6Q3LI70 58 aa4.61□□□□□ -1.67
SMC1A-206ENST00000470241 SEC61GP60059 68 aa4.58□□□□□ -1.68
SMC1A-206ENST00000470241 SERP1Q9Y6X1 66 aa4.58□□□□□ -1.68
SMC1A-206ENST00000470241 KRTAP13-4Q3LI77 160 aa4.56□□□□□ -1.68
SMC1A-206ENST00000470241 FCGBPQ9Y6R7 5405 aaPredicted RBP4.54□□□□□ -1.68
SMC1A-206ENST00000470241 A0A1B0GU69 56 aa4.54□□□□□ -1.68
SMC1A-206ENST00000470241 LINC01554Q52M75 96 aa4.54□□□□□ -1.68
SMC1A-206ENST00000470241 A0A1B0GU33 70 aa4.51□□□□□ -1.69
SMC1A-206ENST00000470241 LINC01558Q9Y6Z2 57 aa4.51□□□□□ -1.69
SMC1A-206ENST00000470241 PLAC4Q8WY50 150 aa4.5□□□□□ -1.69
SMC1A-206ENST00000470241 KRTAP10-5P60370 271 aa4.49□□□□□ -1.69
SMC1A-206ENST00000470241 A6NN06 94 aa4.47□□□□□ -1.69
SMC1A-206ENST00000470241 SPATA8Q6RVD6 105 aa4.46□□□□□ -1.7
SMC1A-206ENST00000470241 PRR15LQ9BU68 103 aa4.46□□□□□ -1.7
SMC1A-206ENST00000470241 MT1XP80297 61 aa4.43□□□□□ -1.7
SMC1A-206ENST00000470241 A0A0D9SG42 100 aa4.42□□□□□ -1.7
SMC1A-206ENST00000470241 RPS28P62857 69 aaKnown RBP4.41□□□□□ -1.7
SMC1A-206ENST00000470241 SMIM26A0A096LP01 95 aa4.4□□□□□ -1.71
SMC1A-206ENST00000470241 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.4□□□□□ -1.71
SMC1A-206ENST00000470241 Q1T7F1 81 aa4.39□□□□□ -1.71
SMC1A-206ENST00000470241 V9GYY9 64 aa4.39□□□□□ -1.71
SMC1A-206ENST00000470241 PRO2289Q9P1D8 64 aa4.38□□□□□ -1.71
SMC1A-206ENST00000470241 A8MU10 97 aa4.37□□□□□ -1.71
SMC1A-206ENST00000470241 KRTAP12-1P59990 96 aa4.35□□□□□ -1.71
SMC1A-206ENST00000470241 PSPHP1O15172 72 aa4.34□□□□□ -1.71
SMC1A-206ENST00000470241 MACF1Q9UPN3 7388 aaKnown RBP4.34□□□□□ -1.72
SMC1A-206ENST00000470241 UQCR11O14957 56 aa4.33□□□□□ -1.72
SMC1A-206ENST00000470241 KRTAP12-2P59991 146 aa4.32□□□□□ -1.72
SMC1A-206ENST00000470241 SPINT4Q6UDR6 99 aa4.32□□□□□ -1.72
SMC1A-206ENST00000470241 CAMK2N1Q7Z7J9 78 aa4.31□□□□□ -1.72
SMC1A-206ENST00000470241 MIR22HGQ0VDD5 57 aa4.27□□□□□ -1.73
SMC1A-206ENST00000470241 SYNE2Q8WXH0 6885 aaKnown RBP4.26□□□□□ -1.73
SMC1A-206ENST00000470241 KRTAP9-7A8MTY7 169 aa4.25□□□□□ -1.73
SMC1A-206ENST00000470241 KRTAP10-7P60409 375 aaPredicted RBP4.23□□□□□ -1.73
SMC1A-206ENST00000470241 KRTAP10-12P60413 245 aa4.21□□□□□ -1.74
SMC1A-206ENST00000470241 KMT2DO14686 5537 aa4.2□□□□□ -1.74
SMC1A-206ENST00000470241 A6NED7 52 aa4.2□□□□□ -1.74
SMC1A-206ENST00000470241 KRTAP6-3Q3LI67 103 aa4.2□□□□□ -1.74
SMC1A-206ENST00000470241 KRTAP4-8A0A0G2JLE6 195 aa4.16□□□□□ -1.74
SMC1A-206ENST00000470241 KRTAP4-8Q9BYQ9 185 aa4.16□□□□□ -1.74
SMC1A-206ENST00000470241 C10orf95Q9H7T3 257 aa4.14□□□□□ -1.75
SMC1A-206ENST00000470241 KRTAP5-9P26371 169 aa4.12□□□□□ -1.75
SMC1A-206ENST00000470241 KRTAP8-1Q8IUC2 63 aa4.12□□□□□ -1.75
SMC1A-206ENST00000470241 K7ERS5 55 aa4.1□□□□□ -1.75
SMC1A-206ENST00000470241 CDC42SE1Q9NRR8 79 aa4.08□□□□□ -1.76
SMC1A-206ENST00000470241 MUC12Q9UKN1 5478 aa4.07□□□□□ -1.76
SMC1A-206ENST00000470241 TNP1P09430 55 aa4.05□□□□□ -1.76
SMC1A-206ENST00000470241 SPRR2FQ96RM1 72 aa4.05□□□□□ -1.76
SMC1A-206ENST00000470241 NEBP20929 6669 aa4□□□□□ -1.77
SMC1A-206ENST00000470241 MDN1Q9NU22 5596 aa3.97□□□□□ -1.77
SMC1A-206ENST00000470241 LOC100996750A0A140TA64 210 aa3.97□□□□□ -1.77
SMC1A-206ENST00000470241 KRTAP19-7Q3SYF9 63 aa3.97□□□□□ -1.77
SMC1A-206ENST00000470241 LCE3AQ5TA76 89 aa3.97□□□□□ -1.77
SMC1A-206ENST00000470241 KRTAP4-6Q9BYQ5 205 aa3.97□□□□□ -1.77
SMC1A-206ENST00000470241 KRTAP25-1Q3LHN0 102 aa3.95□□□□□ -1.78
SMC1A-206ENST00000470241 LCE1AQ5T7P2 110 aa3.93□□□□□ -1.78
SMC1A-206ENST00000470241 SPRR2EP22531 72 aa3.92□□□□□ -1.78
SMC1A-206ENST00000470241 SPRR2BP35325 72 aa3.92□□□□□ -1.78
SMC1A-206ENST00000470241 SPRR2AP35326 72 aa3.92□□□□□ -1.78
SMC1A-206ENST00000470241 KRTAP19-5Q3LI72 72 aa3.92□□□□□ -1.78
SMC1A-206ENST00000470241 MT1EP04732 61 aa3.91□□□□□ -1.78
SMC1A-206ENST00000470241 ROMO1P60602 79 aa3.91□□□□□ -1.78
SMC1A-206ENST00000470241 BRK1Q8WUW1 75 aa3.9□□□□□ -1.79
SMC1A-206ENST00000470241 KRTAP23-1A1A580 65 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms