RNA–Protein interactions for RNA: ENST00000470026.5

BRCA1-209, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-209ENST00000470026 LRP1Q07954 4544 aaKnown RBP7.03□□□□□ -1.28
BRCA1-209ENST00000470026 XP32Q5T750 250 aa7.01□□□□□ -1.29
BRCA1-209ENST00000470026 Q5VSD8 79 aa7.01□□□□□ -1.29
BRCA1-209ENST00000470026 KMT2CQ8NEZ4 4911 aaKnown RBP7□□□□□ -1.29
BRCA1-209ENST00000470026 KRTAP10-6P60371 365 aaPredicted RBP6.99□□□□□ -1.29
BRCA1-209ENST00000470026 HSPG2P98160 4391 aa6.98□□□□□ -1.29
BRCA1-209ENST00000470026 KRTAP3-2Q9BYR7 98 aa6.95□□□□□ -1.3
BRCA1-209ENST00000470026 KRTAP25-1Q3LHN0 102 aa6.92□□□□□ -1.3
BRCA1-209ENST00000470026 K7ERS5 55 aa6.92□□□□□ -1.3
BRCA1-209ENST00000470026 KRTAP17-1Q9BYP8 105 aa6.92□□□□□ -1.3
BRCA1-209ENST00000470026 S4R3F8 94 aa6.91□□□□□ -1.3
BRCA1-209ENST00000470026 MT1HL1P0DM35 61 aa6.9□□□□□ -1.3
BRCA1-209ENST00000470026 RYR1P21817 5038 aa6.9□□□□□ -1.3
BRCA1-209ENST00000470026 KRTAP13-4Q3LI77 160 aa6.89□□□□□ -1.31
BRCA1-209ENST00000470026 DMBT1Q9UGM3 2413 aaPredicted RBP6.87□□□□□ -1.31
BRCA1-209ENST00000470026 MYCBP2O75592 4640 aa6.83□□□□□ -1.32
BRCA1-209ENST00000470026 ROMO1P60602 79 aa6.8□□□□□ -1.32
BRCA1-209ENST00000470026 P0C880 135 aa6.8□□□□□ -1.32
BRCA1-209ENST00000470026 RYR3Q15413 4870 aa6.77□□□□□ -1.33
BRCA1-209ENST00000470026 TPRXLQ17RH7 258 aa6.76□□□□□ -1.33
BRCA1-209ENST00000470026 A0A0D9SG42 100 aa6.74□□□□□ -1.33
BRCA1-209ENST00000470026 KIAA1109Q2LD37 5005 aa6.72□□□□□ -1.33
BRCA1-209ENST00000470026 CRIPTQ9P021 101 aa6.7□□□□□ -1.34
BRCA1-209ENST00000470026 LPAP08519 4548 aa6.66□□□□□ -1.34
BRCA1-209ENST00000470026 KRTAP12-2P59991 146 aa6.66□□□□□ -1.34
BRCA1-209ENST00000470026 LRP2P98164 4655 aa6.66□□□□□ -1.34
BRCA1-209ENST00000470026 KRTAP12-1P59990 96 aa6.64□□□□□ -1.35
BRCA1-209ENST00000470026 M0QZ58 72 aa6.63□□□□□ -1.35
BRCA1-209ENST00000470026 SPINT4Q6UDR6 99 aa6.53□□□□□ -1.36
BRCA1-209ENST00000470026 C10orf95Q9H7T3 257 aa6.51□□□□□ -1.37
BRCA1-209ENST00000470026 EPPK1P58107 5090 aaKnown RBP6.5□□□□□ -1.37
BRCA1-209ENST00000470026 KRTAP4-5Q9BYR2 181 aa6.5□□□□□ -1.37
BRCA1-209ENST00000470026 SEC61BP60468 96 aaKnown RBP6.47□□□□□ -1.37
BRCA1-209ENST00000470026 ABCA13Q86UQ4 5058 aa6.45□□□□□ -1.38
BRCA1-209ENST00000470026 MUC17Q685J3 4493 aa6.44□□□□□ -1.38
BRCA1-209ENST00000470026 KRTAP4-1Q9BYQ7 146 aa6.41□□□□□ -1.38
BRCA1-209ENST00000470026 H3BS24 57 aa6.39□□□□□ -1.39
BRCA1-209ENST00000470026 R4GN34 69 aa6.39□□□□□ -1.39
BRCA1-209ENST00000470026 KRTAP19-2Q3LHN2 52 aa6.38□□□□□ -1.39
BRCA1-209ENST00000470026 LORP23490 312 aaPredicted RBP6.34□□□□□ -1.39
BRCA1-209ENST00000470026 KRTAP15-1Q3LI76 137 aa6.34□□□□□ -1.4
BRCA1-209ENST00000470026 J3QL48 77 aa6.26□□□□□ -1.41
BRCA1-209ENST00000470026 HERC2O95714 4834 aa6.19□□□□□ -1.42
BRCA1-209ENST00000470026 BIRC6Q9NR09 4857 aa6.11□□□□□ -1.43
BRCA1-209ENST00000470026 NDUFAF8A1L188 74 aa6.09□□□□□ -1.43
BRCA1-209ENST00000470026 FLGP20930 4061 aaPredicted RBP6.08□□□□□ -1.44
BRCA1-209ENST00000470026 PP632Q6XCG6 107 aa6.06□□□□□ -1.44
BRCA1-209ENST00000470026 CAMK2N1Q7Z7J9 78 aa6.04□□□□□ -1.44
BRCA1-209ENST00000470026 HERC1Q15751 4861 aa6.04□□□□□ -1.44
BRCA1-209ENST00000470026 PLAC4Q8WY50 150 aa6.02□□□□□ -1.45
BRCA1-209ENST00000470026 LCE2CQ5TA81 110 aa5.95□□□□□ -1.46
BRCA1-209ENST00000470026 MUC2Q02817 5179 aa5.95□□□□□ -1.46
BRCA1-209ENST00000470026 KRTAP23-1A1A580 65 aa5.92□□□□□ -1.46
BRCA1-209ENST00000470026 LCE2BO14633 110 aa5.9□□□□□ -1.46
BRCA1-209ENST00000470026 HMCN2Q8NDA2 5059 aa5.89□□□□□ -1.47
BRCA1-209ENST00000470026 TNP1P09430 55 aa5.87□□□□□ -1.47
BRCA1-209ENST00000470026 SPRR2GQ9BYE4 73 aa5.87□□□□□ -1.47
BRCA1-209ENST00000470026 PCLOQ9Y6V0 5065 aa5.86□□□□□ -1.47
BRCA1-209ENST00000470026 KRTAP19-1Q8IUB9 90 aa5.82□□□□□ -1.48
BRCA1-209ENST00000470026 MT1HP80294 61 aa5.75□□□□□ -1.49
BRCA1-209ENST00000470026 FAT4Q6V0I7 4981 aa5.72□□□□□ -1.49
BRCA1-209ENST00000470026 SPRR5A0A1B0GTR4 108 aa5.71□□□□□ -1.5
BRCA1-209ENST00000470026 LUZP6Q538Z0 58 aa5.7□□□□□ -1.5
BRCA1-209ENST00000470026 MT2AP02795 61 aa5.68□□□□□ -1.5
BRCA1-209ENST00000470026 MT1FP04733 61 aa5.67□□□□□ -1.5
BRCA1-209ENST00000470026 M0R2T5 61 aa5.66□□□□□ -1.5
BRCA1-209ENST00000470026 KRTAP9-8Q9BYQ0 159 aa5.65□□□□□ -1.5
BRCA1-209ENST00000470026 KRTAP19-8Q3LI54 63 aa5.63□□□□□ -1.51
BRCA1-209ENST00000470026 KRTAP10-10P60014 251 aa5.6□□□□□ -1.51
BRCA1-209ENST00000470026 RNF213Q63HN8 5207 aa5.57□□□□□ -1.52
BRCA1-209ENST00000470026 LCE3AQ5TA76 89 aa5.56□□□□□ -1.52
BRCA1-209ENST00000470026 LCE2AQ5TA79 106 aaPredicted RBP5.54□□□□□ -1.52
BRCA1-209ENST00000470026 MT1BP07438 61 aa5.52□□□□□ -1.53
BRCA1-209ENST00000470026 KRTAP8-1Q8IUC2 63 aa5.5□□□□□ -1.53
BRCA1-209ENST00000470026 UBR4Q5T4S7 5183 aa5.49□□□□□ -1.53
BRCA1-209ENST00000470026 KRTAP10-5P60370 271 aa5.48□□□□□ -1.53
BRCA1-209ENST00000470026 MT1XP80297 61 aa5.48□□□□□ -1.53
BRCA1-209ENST00000470026 A0A0A0MQY5 61 aa5.43□□□□□ -1.54
BRCA1-209ENST00000470026 KRTAP9-3Q9BYQ3 159 aa5.42□□□□□ -1.54
BRCA1-209ENST00000470026 KRTAP10-12P60413 245 aa5.34□□□□□ -1.55
BRCA1-209ENST00000470026 KRTAP12-3P60328 96 aa5.3□□□□□ -1.56
BRCA1-209ENST00000470026 KRTAP10-7P60409 375 aaPredicted RBP5.29□□□□□ -1.56
BRCA1-209ENST00000470026 PRO2289Q9P1D8 64 aa5.23□□□□□ -1.57
BRCA1-209ENST00000470026 KRTAP19-5Q3LI72 72 aa5.07□□□□□ -1.6
BRCA1-209ENST00000470026 LOC100996750A0A140TA64 210 aa5.04□□□□□ -1.6
BRCA1-209ENST00000470026 KRTAP4-6Q9BYQ5 205 aa5.04□□□□□ -1.6
BRCA1-209ENST00000470026 LCE3CQ5T5A8 94 aa5.02□□□□□ -1.61
BRCA1-209ENST00000470026 INE1O15225 51 aa4.99□□□□□ -1.61
BRCA1-209ENST00000470026 KRTAP4-8A0A0G2JLE6 195 aa4.93□□□□□ -1.62
BRCA1-209ENST00000470026 KRTAP4-8Q9BYQ9 185 aa4.93□□□□□ -1.62
BRCA1-209ENST00000470026 KRTAP19-7Q3SYF9 63 aa4.89□□□□□ -1.63
BRCA1-209ENST00000470026 USH2AO75445 5202 aa4.87□□□□□ -1.63
BRCA1-209ENST00000470026 KRTAP19-4Q3LI73 84 aa4.85□□□□□ -1.63
BRCA1-209ENST00000470026 KRTAP9-6A8MVA2 160 aa4.84□□□□□ -1.64
BRCA1-209ENST00000470026 KMT2DO14686 5537 aa4.81□□□□□ -1.64
BRCA1-209ENST00000470026 MT1EP04732 61 aa4.74□□□□□ -1.65
BRCA1-209ENST00000470026 MT1LQ93083 61 aa4.74□□□□□ -1.65
BRCA1-209ENST00000470026 KRTAP2-3P0C7H8 128 aa4.72□□□□□ -1.65
BRCA1-209ENST00000470026 KRTAP2-4Q9BYR9 128 aa4.72□□□□□ -1.65
BRCA1-209ENST00000470026 KRTAP2-1Q9BYU5 128 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms