RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 KRTAP3-3Q9BYR6 98 aa10.19□□□□□ -0.78
SDF4-205ENST00000465727 SMR3BP02814 79 aaPredicted RBP10.18□□□□□ -0.78
SDF4-205ENST00000465727 PKHD1P08F94 4074 aa10.17□□□□□ -0.78
SDF4-205ENST00000465727 KRTAP13-4Q3LI77 160 aa10.16□□□□□ -0.78
SDF4-205ENST00000465727 KRTAP10-4P60372 401 aaPredicted RBP10.15□□□□□ -0.78
SDF4-205ENST00000465727 KRTAP3-2Q9BYR7 98 aa10.14□□□□□ -0.79
SDF4-205ENST00000465727 APOBP04114 4563 aaKnown RBP10.13□□□□□ -0.79
SDF4-205ENST00000465727 TPRXLQ17RH7 258 aa10.12□□□□□ -0.79
SDF4-205ENST00000465727 A0A0D9SG42 100 aa10.11□□□□□ -0.79
SDF4-205ENST00000465727 DYNC1H1Q14204 4646 aaKnown RBP10.09□□□□□ -0.79
SDF4-205ENST00000465727 KIAA1109Q2LD37 5005 aa10.09□□□□□ -0.79
SDF4-205ENST00000465727 SPINT4Q6UDR6 99 aa10.09□□□□□ -0.79
SDF4-205ENST00000465727 S4R3F8 94 aa10.08□□□□□ -0.8
SDF4-205ENST00000465727 HERC2O95714 4834 aa10.06□□□□□ -0.8
SDF4-205ENST00000465727 DMBT1Q9UGM3 2413 aaPredicted RBP9.98□□□□□ -0.81
SDF4-205ENST00000465727 FAT1Q14517 4588 aa9.97□□□□□ -0.81
SDF4-205ENST00000465727 RYR1P21817 5038 aa9.96□□□□□ -0.82
SDF4-205ENST00000465727 C10orf95Q9H7T3 257 aa9.94□□□□□ -0.82
SDF4-205ENST00000465727 KRTAP15-1Q3LI76 137 aa9.92□□□□□ -0.82
SDF4-205ENST00000465727 KRTAP12-2P59991 146 aa9.9□□□□□ -0.82
SDF4-205ENST00000465727 KRTAP17-1Q9BYP8 105 aa9.9□□□□□ -0.82
SDF4-205ENST00000465727 KRTAP10-8P60410 259 aa9.89□□□□□ -0.83
SDF4-205ENST00000465727 HSPG2P98160 4391 aa9.89□□□□□ -0.83
SDF4-205ENST00000465727 FAT3Q8TDW7 4589 aa9.88□□□□□ -0.83
SDF4-205ENST00000465727 XP32Q5T750 250 aa9.85□□□□□ -0.83
SDF4-205ENST00000465727 PCLOQ9Y6V0 5065 aa9.84□□□□□ -0.83
SDF4-205ENST00000465727 KRTAP12-1P59990 96 aa9.83□□□□□ -0.84
SDF4-205ENST00000465727 KRTAP4-5Q9BYR2 181 aa9.83□□□□□ -0.84
SDF4-205ENST00000465727 LRP1Q07954 4544 aaKnown RBP9.81□□□□□ -0.84
SDF4-205ENST00000465727 TNXBP22105 4242 aa9.81□□□□□ -0.84
SDF4-205ENST00000465727 ABCA13Q86UQ4 5058 aa9.8□□□□□ -0.84
SDF4-205ENST00000465727 NDUFAF8A1L188 74 aa9.78□□□□□ -0.84
SDF4-205ENST00000465727 M0QZ58 72 aa9.76□□□□□ -0.85
SDF4-205ENST00000465727 Q5VSD8 79 aa9.62□□□□□ -0.87
SDF4-205ENST00000465727 A0A0A0MQY5 61 aa9.59□□□□□ -0.87
SDF4-205ENST00000465727 MYCBP2O75592 4640 aa9.48□□□□□ -0.89
SDF4-205ENST00000465727 R4GN34 69 aa9.37□□□□□ -0.91
SDF4-205ENST00000465727 HERC1Q15751 4861 aa9.35□□□□□ -0.91
SDF4-205ENST00000465727 MT1HL1P0DM35 61 aa9.33□□□□□ -0.92
SDF4-205ENST00000465727 PLAC4Q8WY50 150 aa9.3□□□□□ -0.92
SDF4-205ENST00000465727 LPAP08519 4548 aa9.27□□□□□ -0.93
SDF4-205ENST00000465727 J3QL48 77 aa9.26□□□□□ -0.93
SDF4-205ENST00000465727 LRP2P98164 4655 aa9.2□□□□□ -0.94
SDF4-205ENST00000465727 PP632Q6XCG6 107 aa9.16□□□□□ -0.94
SDF4-205ENST00000465727 LORP23490 312 aaPredicted RBP9.06□□□□□ -0.96
SDF4-205ENST00000465727 HMCN2Q8NDA2 5059 aa9.04□□□□□ -0.96
SDF4-205ENST00000465727 LUZP6Q538Z0 58 aa9.03□□□□□ -0.96
SDF4-205ENST00000465727 SEC61BP60468 96 aaKnown RBP9□□□□□ -0.97
SDF4-205ENST00000465727 CAMK2N1Q7Z7J9 78 aa8.93□□□□□ -0.98
SDF4-205ENST00000465727 MUC17Q685J3 4493 aa8.88□□□□□ -0.99
SDF4-205ENST00000465727 UBR4Q5T4S7 5183 aa8.81□□□□□ -1
SDF4-205ENST00000465727 KRTAP23-1A1A580 65 aa8.79□□□□□ -1
SDF4-205ENST00000465727 KRTAP4-1Q9BYQ7 146 aa8.76□□□□□ -1.01
SDF4-205ENST00000465727 KRTAP19-2Q3LHN2 52 aa8.74□□□□□ -1.01
SDF4-205ENST00000465727 TNP1P09430 55 aa8.7□□□□□ -1.02
SDF4-205ENST00000465727 SPRR5A0A1B0GTR4 108 aa8.65□□□□□ -1.02
SDF4-205ENST00000465727 RNF213Q63HN8 5207 aa8.58□□□□□ -1.04
SDF4-205ENST00000465727 FLGP20930 4061 aaPredicted RBP8.45□□□□□ -1.06
SDF4-205ENST00000465727 MUC2Q02817 5179 aa8.34□□□□□ -1.07
SDF4-205ENST00000465727 SPRR2GQ9BYE4 73 aa8.25□□□□□ -1.09
SDF4-205ENST00000465727 FAT4Q6V0I7 4981 aa8.13□□□□□ -1.11
SDF4-205ENST00000465727 LCE3AQ5TA76 89 aa8.11□□□□□ -1.11
SDF4-205ENST00000465727 KRTAP19-1Q8IUB9 90 aa8.11□□□□□ -1.11
SDF4-205ENST00000465727 PRO2289Q9P1D8 64 aa8.07□□□□□ -1.12
SDF4-205ENST00000465727 LCE2AQ5TA79 106 aaPredicted RBP8.05□□□□□ -1.12
SDF4-205ENST00000465727 LCE2CQ5TA81 110 aa8.01□□□□□ -1.13
SDF4-205ENST00000465727 INE1O15225 51 aa8□□□□□ -1.13
SDF4-205ENST00000465727 KRTAP8-1Q8IUC2 63 aa7.99□□□□□ -1.13
SDF4-205ENST00000465727 M0R2T5 61 aa7.84□□□□□ -1.15
SDF4-205ENST00000465727 KRTAP19-8Q3LI54 63 aa7.8□□□□□ -1.16
SDF4-205ENST00000465727 KRTAP9-2Q9BYQ4 174 aa7.79□□□□□ -1.16
SDF4-205ENST00000465727 KRTAP10-10P60014 251 aa7.77□□□□□ -1.17
SDF4-205ENST00000465727 MT1HP80294 61 aa7.77□□□□□ -1.17
SDF4-205ENST00000465727 MT2AP02795 61 aa7.76□□□□□ -1.17
SDF4-205ENST00000465727 MT1FP04733 61 aa7.76□□□□□ -1.17
SDF4-205ENST00000465727 KRTAP12-3P60328 96 aa7.74□□□□□ -1.17
SDF4-205ENST00000465727 KRTAP10-5P60370 271 aa7.71□□□□□ -1.18
SDF4-205ENST00000465727 KRTAP10-12P60413 245 aa7.69□□□□□ -1.18
SDF4-205ENST00000465727 MT1XP80297 61 aa7.67□□□□□ -1.18
SDF4-205ENST00000465727 KRTAP9-8Q9BYQ0 159 aa7.66□□□□□ -1.18
SDF4-205ENST00000465727 KRTAP9-6A0A140TA67 174 aa7.64□□□□□ -1.19
SDF4-205ENST00000465727 MT1BP07438 61 aa7.63□□□□□ -1.19
SDF4-205ENST00000465727 LCE2DQ5TA82 110 aaPredicted RBP7.56□□□□□ -1.2
SDF4-205ENST00000465727 KRTAP10-7P60409 375 aaPredicted RBP7.47□□□□□ -1.21
SDF4-205ENST00000465727 FSIP2Q5CZC0 6907 aa7.39□□□□□ -1.23
SDF4-205ENST00000465727 CRCT1Q9UGL9 99 aa7.34□□□□□ -1.23
SDF4-205ENST00000465727 LCE3CQ5T5A8 94 aa7.32□□□□□ -1.24
SDF4-205ENST00000465727 KRTAP9-3Q9BYQ3 159 aa7.32□□□□□ -1.24
SDF4-205ENST00000465727 KRTAP19-5Q3LI72 72 aa7.24□□□□□ -1.25
SDF4-205ENST00000465727 USH2AO75445 5202 aa7.15□□□□□ -1.27
SDF4-205ENST00000465727 LCE2BO14633 110 aa7.1□□□□□ -1.27
SDF4-205ENST00000465727 SSPOA2VEC9 5147 aa7.07□□□□□ -1.28
SDF4-205ENST00000465727 KRTAP2-3P0C7H8 128 aa7.02□□□□□ -1.29
SDF4-205ENST00000465727 KRTAP2-4Q9BYR9 128 aa7.02□□□□□ -1.29
SDF4-205ENST00000465727 KRTAP2-1Q9BYU5 128 aa7.02□□□□□ -1.29
SDF4-205ENST00000465727 KRTAP9-6A8MVA2 160 aa7.02□□□□□ -1.29
SDF4-205ENST00000465727 KRTAP19-4Q3LI73 84 aa6.99□□□□□ -1.29
SDF4-205ENST00000465727 FCGBPQ9Y6R7 5405 aaPredicted RBP6.88□□□□□ -1.31
SDF4-205ENST00000465727 KRTAP4-8A0A0G2JLE6 195 aa6.85□□□□□ -1.31
SDF4-205ENST00000465727 KRTAP4-8Q9BYQ9 185 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms