RNA–Protein interactions for RNA: ENST00000462613.1

SF3B1-206, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 3

Gene SF3B1, Length 141 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-206ENST00000462613 COX7CP15954 63 aa3.05□□□□□ -1.92
SF3B1-206ENST00000462613 DMAC1Q96GE9 116 aa3.05□□□□□ -1.92
SF3B1-206ENST00000462613 LCE2DQ5TA82 110 aaPredicted RBP3.04□□□□□ -1.92
SF3B1-206ENST00000462613 ANAPC13Q9BS18 74 aa3.04□□□□□ -1.92
SF3B1-206ENST00000462613 KRTAP9-8Q9BYQ0 159 aa3.04□□□□□ -1.92
SF3B1-206ENST00000462613 SPTSSBQ8NFR3 76 aa3.03□□□□□ -1.92
SF3B1-206ENST00000462613 CHKB-CPT1BH3BT56 60 aa3.02□□□□□ -1.93
SF3B1-206ENST00000462613 MT2AP02795 61 aa3.02□□□□□ -1.93
SF3B1-206ENST00000462613 SPANXA2-OT1Q8N9U9 137 aa3.02□□□□□ -1.93
SF3B1-206ENST00000462613 MT1FP04733 61 aa2.99□□□□□ -1.93
SF3B1-206ENST00000462613 KRTAP3-3Q9BYR6 98 aa2.99□□□□□ -1.93
SF3B1-206ENST00000462613 FSIP2Q5CZC0 6907 aa2.98□□□□□ -1.93
SF3B1-206ENST00000462613 H0YAA0 97 aa2.97□□□□□ -1.93
SF3B1-206ENST00000462613 CRIPTQ9P021 101 aa2.96□□□□□ -1.94
SF3B1-206ENST00000462613 H7BZZ5 65 aa2.94□□□□□ -1.94
SF3B1-206ENST00000462613 ADM2Q7Z4H4 148 aa2.94□□□□□ -1.94
SF3B1-206ENST00000462613 KRTAP9-3Q9BYQ3 159 aa2.94□□□□□ -1.94
SF3B1-206ENST00000462613 ATP5EP56381 51 aaPredicted RBP2.93□□□□□ -1.94
SF3B1-206ENST00000462613 CCDC179H3BU77 68 aa2.91□□□□□ -1.94
SF3B1-206ENST00000462613 COA5Q86WW8 74 aa2.91□□□□□ -1.94
SF3B1-206ENST00000462613 CRCT1Q9UGL9 99 aa2.91□□□□□ -1.94
SF3B1-206ENST00000462613 SEC61GP60059 68 aa2.9□□□□□ -1.95
SF3B1-206ENST00000462613 R4GN34 69 aa2.9□□□□□ -1.95
SF3B1-206ENST00000462613 CYSTM1Q9H1C7 97 aa2.89□□□□□ -1.95
SF3B1-206ENST00000462613 LCE2BO14633 110 aa2.88□□□□□ -1.95
SF3B1-206ENST00000462613 TMEM258P61165 79 aa2.88□□□□□ -1.95
SF3B1-206ENST00000462613 Q5VV11 94 aa2.88□□□□□ -1.95
SF3B1-206ENST00000462613 SPRR2GQ9BYE4 73 aa2.88□□□□□ -1.95
SF3B1-206ENST00000462613 SERP1Q9Y6X1 66 aa2.88□□□□□ -1.95
SF3B1-206ENST00000462613 M0QZ58 72 aa2.86□□□□□ -1.95
SF3B1-206ENST00000462613 P0C880 135 aa2.85□□□□□ -1.95
SF3B1-206ENST00000462613 KRTAP19-1Q8IUB9 90 aa2.85□□□□□ -1.95
SF3B1-206ENST00000462613 KRTAP19-8Q3LI54 63 aa2.83□□□□□ -1.96
SF3B1-206ENST00000462613 PLAC4Q8WY50 150 aa2.82□□□□□ -1.96
SF3B1-206ENST00000462613 KRTAP3-2Q9BYR7 98 aa2.82□□□□□ -1.96
SF3B1-206ENST00000462613 A0A1B0GU69 56 aa2.81□□□□□ -1.96
SF3B1-206ENST00000462613 LINC01554Q52M75 96 aa2.81□□□□□ -1.96
SF3B1-206ENST00000462613 PRR15LQ9BU68 103 aa2.81□□□□□ -1.96
SF3B1-206ENST00000462613 KRTAP19-6Q3LI70 58 aa2.8□□□□□ -1.96
SF3B1-206ENST00000462613 A6NN06 94 aa2.78□□□□□ -1.96
SF3B1-206ENST00000462613 MT1BP07438 61 aa2.78□□□□□ -1.96
SF3B1-206ENST00000462613 USH2AO75445 5202 aa2.78□□□□□ -1.96
SF3B1-206ENST00000462613 A0A1B0GU33 70 aa2.77□□□□□ -1.97
SF3B1-206ENST00000462613 KRTAP9-7A8MTY7 169 aa2.77□□□□□ -1.97
SF3B1-206ENST00000462613 PCP4P48539 62 aa2.77□□□□□ -1.97
SF3B1-206ENST00000462613 PRO2289Q9P1D8 64 aa2.77□□□□□ -1.97
SF3B1-206ENST00000462613 V9GYY9 64 aa2.74□□□□□ -1.97
SF3B1-206ENST00000462613 LINC01558Q9Y6Z2 57 aa2.73□□□□□ -1.97
SF3B1-206ENST00000462613 SMIM26A0A096LP01 95 aa2.72□□□□□ -1.97
SF3B1-206ENST00000462613 KRTAP10-5P60370 271 aa2.72□□□□□ -1.97
SF3B1-206ENST00000462613 SSPOA2VEC9 5147 aa2.72□□□□□ -1.97
SF3B1-206ENST00000462613 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.71□□□□□ -1.98
SF3B1-206ENST00000462613 A0A0D9SG42 100 aa2.7□□□□□ -1.98
SF3B1-206ENST00000462613 SPATA8Q6RVD6 105 aa2.7□□□□□ -1.98
SF3B1-206ENST00000462613 CAMK2N1Q7Z7J9 78 aa2.7□□□□□ -1.98
SF3B1-206ENST00000462613 UQCR11O14957 56 aa2.69□□□□□ -1.98
SF3B1-206ENST00000462613 KRTAP13-4Q3LI77 160 aa2.69□□□□□ -1.98
SF3B1-206ENST00000462613 SPINT4Q6UDR6 99 aa2.68□□□□□ -1.98
SF3B1-206ENST00000462613 SYNE2Q8WXH0 6885 aaKnown RBP2.66□□□□□ -1.98
SF3B1-206ENST00000462613 RPS28P62857 69 aaKnown RBP2.66□□□□□ -1.98
SF3B1-206ENST00000462613 Q1T7F1 81 aa2.66□□□□□ -1.98
SF3B1-206ENST00000462613 FCGBPQ9Y6R7 5405 aaPredicted RBP2.65□□□□□ -1.98
SF3B1-206ENST00000462613 MT1XP80297 61 aa2.65□□□□□ -1.99
SF3B1-206ENST00000462613 K7ERS5 55 aa2.63□□□□□ -1.99
SF3B1-206ENST00000462613 PSPHP1O15172 72 aa2.63□□□□□ -1.99
SF3B1-206ENST00000462613 KRTAP12-1P59990 96 aa2.62□□□□□ -1.99
SF3B1-206ENST00000462613 MIR22HGQ0VDD5 57 aa2.62□□□□□ -1.99
SF3B1-206ENST00000462613 A8MU10 97 aa2.61□□□□□ -1.99
SF3B1-206ENST00000462613 A6NED7 52 aa2.59□□□□□ -1.99
SF3B1-206ENST00000462613 KRTAP12-2P59991 146 aa2.59□□□□□ -1.99
SF3B1-206ENST00000462613 MACF1Q9UPN3 7388 aaKnown RBP2.59□□□□□ -1.99
SF3B1-206ENST00000462613 KRTAP6-3Q3LI67 103 aa2.57□□□□□ -2
SF3B1-206ENST00000462613 KRTAP8-1Q8IUC2 63 aa2.55□□□□□ -2
SF3B1-206ENST00000462613 KRTAP10-7P60409 375 aaPredicted RBP2.53□□□□□ -2
SF3B1-206ENST00000462613 KRTAP10-12P60413 245 aa2.53□□□□□ -2
SF3B1-206ENST00000462613 TNP1P09430 55 aa2.52□□□□□ -2.01
SF3B1-206ENST00000462613 KRTAP5-9P26371 169 aa2.5□□□□□ -2.01
SF3B1-206ENST00000462613 SPRR2FQ96RM1 72 aa2.5□□□□□ -2.01
SF3B1-206ENST00000462613 NEBP20929 6669 aa2.5□□□□□ -2.01
SF3B1-206ENST00000462613 KRTAP4-8A0A0G2JLE6 195 aa2.48□□□□□ -2.01
SF3B1-206ENST00000462613 KRTAP4-8Q9BYQ9 185 aa2.48□□□□□ -2.01
SF3B1-206ENST00000462613 CDC42SE1Q9NRR8 79 aa2.48□□□□□ -2.01
SF3B1-206ENST00000462613 C10orf95Q9H7T3 257 aa2.47□□□□□ -2.01
SF3B1-206ENST00000462613 KRTAP25-1Q3LHN0 102 aa2.45□□□□□ -2.02
SF3B1-206ENST00000462613 KRTAP20-1Q3LI63 56 aa2.44□□□□□ -2.02
SF3B1-206ENST00000462613 SPRR2EP22531 72 aa2.43□□□□□ -2.02
SF3B1-206ENST00000462613 SPRR2BP35325 72 aa2.43□□□□□ -2.02
SF3B1-206ENST00000462613 SPRR2AP35326 72 aa2.43□□□□□ -2.02
SF3B1-206ENST00000462613 KMT2DO14686 5537 aa2.4□□□□□ -2.02
SF3B1-206ENST00000462613 ROMO1P60602 79 aa2.39□□□□□ -2.03
SF3B1-206ENST00000462613 BRK1Q8WUW1 75 aa2.39□□□□□ -2.03
SF3B1-206ENST00000462613 MUC12Q9UKN1 5478 aa2.39□□□□□ -2.03
SF3B1-206ENST00000462613 LCE3AQ5TA76 89 aa2.38□□□□□ -2.03
SF3B1-206ENST00000462613 LCE1AQ5T7P2 110 aa2.37□□□□□ -2.03
SF3B1-206ENST00000462613 KRTAP19-5Q3LI72 72 aa2.36□□□□□ -2.03
SF3B1-206ENST00000462613 KRTAP23-1A1A580 65 aa2.35□□□□□ -2.03
SF3B1-206ENST00000462613 SPRR2DP22532 72 aa2.35□□□□□ -2.03
SF3B1-206ENST00000462613 KRTAP19-7Q3SYF9 63 aa2.35□□□□□ -2.03
SF3B1-206ENST00000462613 MT1EP04732 61 aa2.34□□□□□ -2.03
SF3B1-206ENST00000462613 PP632Q6XCG6 107 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms