RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 MACF1Q9UPN3 7388 aaKnown RBP7.97□□□□□ -1.13
USP39-208ENST00000455732 FAM236AA0A1B0GUQ0 79 aa7.94□□□□□ -1.14
USP39-208ENST00000455732 FAM236BA0A1B0GV22 79 aa7.94□□□□□ -1.14
USP39-208ENST00000455732 A8MUN3 132 aa7.94□□□□□ -1.14
USP39-208ENST00000455732 H3BPC8 53 aa7.92□□□□□ -1.14
USP39-208ENST00000455732 KLKP1Q107X0 134 aa7.92□□□□□ -1.14
USP39-208ENST00000455732 IMUPQ9GZP8 106 aa7.91□□□□□ -1.14
USP39-208ENST00000455732 SYNE2Q8WXH0 6885 aaKnown RBP7.9□□□□□ -1.14
USP39-208ENST00000455732 K7ERU9 68 aa7.9□□□□□ -1.14
USP39-208ENST00000455732 SCGB1A1P11684 91 aa7.89□□□□□ -1.15
USP39-208ENST00000455732 NDUFC1O43677 76 aa7.85□□□□□ -1.15
USP39-208ENST00000455732 MT-ATP8P03928 68 aa7.84□□□□□ -1.15
USP39-208ENST00000455732 SPRR2GQ9BYE4 73 aa7.84□□□□□ -1.15
USP39-208ENST00000455732 H0YAA0 97 aa7.8□□□□□ -1.16
USP39-208ENST00000455732 KRTAP19-8Q3LI54 63 aa7.77□□□□□ -1.17
USP39-208ENST00000455732 CRIPTQ9P021 101 aa7.77□□□□□ -1.17
USP39-208ENST00000455732 KRTAP6-3Q3LI67 103 aa7.76□□□□□ -1.17
USP39-208ENST00000455732 SMIM20Q8N5G0 67 aa7.76□□□□□ -1.17
USP39-208ENST00000455732 DMAC1Q96GE9 116 aa7.75□□□□□ -1.17
USP39-208ENST00000455732 MT1BP07438 61 aa7.74□□□□□ -1.17
USP39-208ENST00000455732 TRAV7A0A075B6U4 112 aa7.73□□□□□ -1.17
USP39-208ENST00000455732 Q5VV11 94 aa7.73□□□□□ -1.17
USP39-208ENST00000455732 ADM2Q7Z4H4 148 aa7.65□□□□□ -1.18
USP39-208ENST00000455732 A6NN06 94 aa7.61□□□□□ -1.19
USP39-208ENST00000455732 ACYP2P14621 99 aa7.56□□□□□ -1.2
USP39-208ENST00000455732 KRTAP10-5P60370 271 aa7.55□□□□□ -1.2
USP39-208ENST00000455732 C20orf197Q8N268 126 aa7.54□□□□□ -1.2
USP39-208ENST00000455732 SERP2Q8N6R1 65 aa7.52□□□□□ -1.21
USP39-208ENST00000455732 SNURFQ9Y675 71 aa7.52□□□□□ -1.21
USP39-208ENST00000455732 P0C880 135 aa7.5□□□□□ -1.21
USP39-208ENST00000455732 NEBP20929 6669 aa7.49□□□□□ -1.21
USP39-208ENST00000455732 KRTAP3-2Q9BYR7 98 aa7.48□□□□□ -1.21
USP39-208ENST00000455732 SPANXA2-OT1Q8N9U9 137 aa7.47□□□□□ -1.21
USP39-208ENST00000455732 MUC12Q9UKN1 5478 aa7.46□□□□□ -1.21
USP39-208ENST00000455732 SPTSSBQ8NFR3 76 aa7.46□□□□□ -1.22
USP39-208ENST00000455732 R4GN34 69 aa7.46□□□□□ -1.22
USP39-208ENST00000455732 CHKB-CPT1BH3BT56 60 aa7.4□□□□□ -1.22
USP39-208ENST00000455732 M0QZ58 72 aa7.4□□□□□ -1.22
USP39-208ENST00000455732 KRTAP20-1Q3LI63 56 aa7.35□□□□□ -1.23
USP39-208ENST00000455732 PLAC4Q8WY50 150 aa7.34□□□□□ -1.23
USP39-208ENST00000455732 COX7CP15954 63 aa7.32□□□□□ -1.24
USP39-208ENST00000455732 PRO2289Q9P1D8 64 aa7.31□□□□□ -1.24
USP39-208ENST00000455732 KRTAP5-9P26371 169 aa7.3□□□□□ -1.24
USP39-208ENST00000455732 MT1XP80297 61 aa7.29□□□□□ -1.24
USP39-208ENST00000455732 LINC01554Q52M75 96 aa7.25□□□□□ -1.25
USP39-208ENST00000455732 KMT2DO14686 5537 aa7.25□□□□□ -1.25
USP39-208ENST00000455732 MDN1Q9NU22 5596 aa7.24□□□□□ -1.25
USP39-208ENST00000455732 COA5Q86WW8 74 aa7.22□□□□□ -1.25
USP39-208ENST00000455732 H7BZZ5 65 aa7.19□□□□□ -1.26
USP39-208ENST00000455732 CYSTM1Q9H1C7 97 aa7.17□□□□□ -1.26
USP39-208ENST00000455732 KRTAP12-2P59991 146 aa7.12□□□□□ -1.27
USP39-208ENST00000455732 ANAPC13Q9BS18 74 aa7.11□□□□□ -1.27
USP39-208ENST00000455732 KRTAP13-4Q3LI77 160 aa7.07□□□□□ -1.28
USP39-208ENST00000455732 SPRR2FQ96RM1 72 aa7.06□□□□□ -1.28
USP39-208ENST00000455732 KRTAP2-3P0C7H8 128 aa7.04□□□□□ -1.28
USP39-208ENST00000455732 KRTAP2-4Q9BYR9 128 aa7.04□□□□□ -1.28
USP39-208ENST00000455732 SEC61GP60059 68 aa7.03□□□□□ -1.28
USP39-208ENST00000455732 SPRR2EP22531 72 aa7.02□□□□□ -1.29
USP39-208ENST00000455732 SPRR2BP35325 72 aa7.02□□□□□ -1.29
USP39-208ENST00000455732 SPRR2AP35326 72 aa7.02□□□□□ -1.29
USP39-208ENST00000455732 SERP1Q9Y6X1 66 aa7.01□□□□□ -1.29
USP39-208ENST00000455732 KRTAP8-1Q8IUC2 63 aa6.99□□□□□ -1.29
USP39-208ENST00000455732 CCDC179H3BU77 68 aa6.96□□□□□ -1.3
USP39-208ENST00000455732 KRTAP4-8A0A0G2JLE6 195 aa6.94□□□□□ -1.3
USP39-208ENST00000455732 KRTAP10-7P60409 375 aaPredicted RBP6.94□□□□□ -1.3
USP39-208ENST00000455732 KRTAP10-12P60413 245 aa6.94□□□□□ -1.3
USP39-208ENST00000455732 KRTAP4-8Q9BYQ9 185 aa6.94□□□□□ -1.3
USP39-208ENST00000455732 A0A1B0GU33 70 aa6.9□□□□□ -1.3
USP39-208ENST00000455732 ATP5EP56381 51 aaPredicted RBP6.89□□□□□ -1.31
USP39-208ENST00000455732 SPATA8Q6RVD6 105 aa6.86□□□□□ -1.31
USP39-208ENST00000455732 CAMK2N1Q7Z7J9 78 aa6.86□□□□□ -1.31
USP39-208ENST00000455732 LCE1AQ5T7P2 110 aa6.85□□□□□ -1.31
USP39-208ENST00000455732 A0A1B0GU69 56 aa6.84□□□□□ -1.31
USP39-208ENST00000455732 A0A0D9SG42 100 aa6.83□□□□□ -1.32
USP39-208ENST00000455732 KRTAP2-2Q9BYT5 123 aa6.8□□□□□ -1.32
USP39-208ENST00000455732 KRTAP2-1Q9BYU5 128 aa6.8□□□□□ -1.32
USP39-208ENST00000455732 SPRR2DP22532 72 aa6.79□□□□□ -1.32
USP39-208ENST00000455732 KRTAP12-1P59990 96 aa6.75□□□□□ -1.33
USP39-208ENST00000455732 TMEM258P61165 79 aa6.75□□□□□ -1.33
USP39-208ENST00000455732 SPINT4Q6UDR6 99 aa6.73□□□□□ -1.33
USP39-208ENST00000455732 SMIM26A0A096LP01 95 aa6.72□□□□□ -1.33
USP39-208ENST00000455732 PRR15LQ9BU68 103 aa6.69□□□□□ -1.34
USP39-208ENST00000455732 LINC01558Q9Y6Z2 57 aa6.66□□□□□ -1.34
USP39-208ENST00000455732 A8MU10 97 aa6.63□□□□□ -1.35
USP39-208ENST00000455732 LCE3BQ5TA77 95 aa6.61□□□□□ -1.35
USP39-208ENST00000455732 KRTAP19-7Q3SYF9 63 aa6.52□□□□□ -1.37
USP39-208ENST00000455732 UQCR11O14957 56 aa6.47□□□□□ -1.37
USP39-208ENST00000455732 MT1EP04732 61 aa6.45□□□□□ -1.38
USP39-208ENST00000455732 C10orf95Q9H7T3 257 aa6.43□□□□□ -1.38
USP39-208ENST00000455732 PCP4P48539 62 aa6.41□□□□□ -1.38
USP39-208ENST00000455732 LCE5AQ5TCM9 118 aa6.4□□□□□ -1.38
USP39-208ENST00000455732 TNP1P09430 55 aa6.38□□□□□ -1.39
USP39-208ENST00000455732 KRTAP19-3Q7Z4W3 81 aa6.37□□□□□ -1.39
USP39-208ENST00000455732 KRTAP19-5Q3LI72 72 aa6.36□□□□□ -1.39
USP39-208ENST00000455732 V9GYY9 64 aa6.36□□□□□ -1.39
USP39-208ENST00000455732 MIR22HGQ0VDD5 57 aa6.32□□□□□ -1.4
USP39-208ENST00000455732 Q1T7F1 81 aa6.32□□□□□ -1.4
USP39-208ENST00000455732 GPR98Q8WXG9 6306 aa6.3□□□□□ -1.4
USP39-208ENST00000455732 LCE3AQ5TA76 89 aa6.29□□□□□ -1.4
USP39-208ENST00000455732 DSTQ03001 7570 aaKnown RBP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms