RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 NISCHQ9Y2I1 1504 aa42.57■■■■■ 4.41
USP39-208ENST00000455732 CCDC180Q9P1Z9 1646 aa38.04■■■■□ 3.68
USP39-208ENST00000455732 ABCC9O60706 1549 aa37.44■■■■□ 3.58
USP39-208ENST00000455732 RB1CC1Q8TDY2 1594 aa35.9■■■■□ 3.34
USP39-208ENST00000455732 NACADO15069 1562 aa35.8■■■■□ 3.32
USP39-208ENST00000455732 DCAF8L2P0C7V8 631 aa35.59■■■■□ 3.29
USP39-208ENST00000455732 MYO15BQ96JP2 1530 aa35.5■■■■□ 3.27
USP39-208ENST00000455732 ZCCHC6Q5VYS8 1495 aaKnown RBP35.41■■■■□ 3.26
USP39-208ENST00000455732 DCAF1Q9Y4B6 1507 aa35.22■■■■□ 3.23
USP39-208ENST00000455732 UNC13AQ9UPW8 1703 aa35.21■■■■□ 3.23
USP39-208ENST00000455732 PABPN1Q86U42 306 aaKnown RBP eCLIP34.9■■■■□ 3.18
USP39-208ENST00000455732 BICRAQ9NZM4 1560 aa34.88■■■■□ 3.17
USP39-208ENST00000455732 DNAJC5BQ9UF47 199 aa34.85■■■■□ 3.17
USP39-208ENST00000455732 SCRIBQ14160 1630 aa34.63■■■■□ 3.13
USP39-208ENST00000455732 SHROOM4Q9ULL8 1493 aa34.44■■■■□ 3.1
USP39-208ENST00000455732 EIF4G1Q04637 1599 aaKnown RBP33.95■■■■□ 3.03
USP39-208ENST00000455732 CC2D2AQ9P2K1 1620 aa33.9■■■■□ 3.02
USP39-208ENST00000455732 CECR2Q9BXF3 1484 aa33.68■■■□□ 2.98
USP39-208ENST00000455732 SMARCA4P51532 1647 aa33.12■■■□□ 2.89
USP39-208ENST00000455732 NCAPD3P42695 1498 aa33.03■■■□□ 2.88
USP39-208ENST00000455732 BAZ1AQ9NRL2 1556 aaPredicted RBP33.01■■■□□ 2.88
USP39-208ENST00000455732 ATAD2BQ9ULI0 1458 aa32.99■■■□□ 2.87
USP39-208ENST00000455732 SMARCA2P51531 1590 aa32.93■■■□□ 2.86
USP39-208ENST00000455732 HMGXB3Q12766 1538 aa32.85■■■□□ 2.85
USP39-208ENST00000455732 PEG3Q9GZU2 1588 aa32.82■■■□□ 2.84
USP39-208ENST00000455732 MROH2BQ7Z745 1585 aa32.81■■■□□ 2.84
USP39-208ENST00000455732 BAZ1BQ9UIG0 1483 aaKnown RBP32.68■■■□□ 2.82
USP39-208ENST00000455732 WIZO95785 1651 aa32.46■■■□□ 2.79
USP39-208ENST00000455732 NESP48681 1621 aa32.33■■■□□ 2.77
USP39-208ENST00000455732 RSF1Q96T23 1441 aaPredicted RBP32.3■■■□□ 2.76
USP39-208ENST00000455732 ERCC6Q03468 1493 aa32.28■■■□□ 2.76
USP39-208ENST00000455732 LAMC3Q9Y6N6 1575 aa32.22■■■□□ 2.75
USP39-208ENST00000455732 CUX2O14529 1486 aa32.2■■■□□ 2.75
USP39-208ENST00000455732 TOP2AP11388 1531 aaKnown RBP32.06■■■□□ 2.72
USP39-208ENST00000455732 DNAJC5Q9H3Z4 198 aa32.05■■■□□ 2.72
USP39-208ENST00000455732 CADPSQ9ULU8 1353 aa32.03■■■□□ 2.72
USP39-208ENST00000455732 KIF21AQ7Z4S6 1674 aa31.99■■■□□ 2.71
USP39-208ENST00000455732 PDS5BQ9NTI5 1447 aa31.96■■■□□ 2.71
USP39-208ENST00000455732 THOC2Q8NI27 1593 aaKnown RBP31.95■■■□□ 2.71
USP39-208ENST00000455732 CFTRP13569 1480 aa31.79■■■□□ 2.68
USP39-208ENST00000455732 CCDC88BA6NC98 1476 aa31.68■■■□□ 2.66
USP39-208ENST00000455732 MRC2Q9UBG0 1479 aa31.67■■■□□ 2.66
USP39-208ENST00000455732 FANCD2Q9BXW9 1451 aa31.65■■■□□ 2.66
USP39-208ENST00000455732 CEP164Q9UPV0 1460 aa31.64■■■□□ 2.66
USP39-208ENST00000455732 PRDM2Q13029 1718 aa31.62■■■□□ 2.65
USP39-208ENST00000455732 WDR62O43379 1518 aa31.61■■■□□ 2.65
USP39-208ENST00000455732 URB2Q14146 1524 aaKnown RBP31.39■■■□□ 2.61
USP39-208ENST00000455732 SUPT5HO00267 1087 aaKnown RBP31.24■■■□□ 2.59
USP39-208ENST00000455732 TOPBP1Q92547 1522 aa31.14■■■□□ 2.57
USP39-208ENST00000455732 ABCC8Q09428 1581 aa31.09■■■□□ 2.57
USP39-208ENST00000455732 DNMBPQ6XZF7 1577 aa31.08■■■□□ 2.57
USP39-208ENST00000455732 IFT140Q96RY7 1462 aa30.99■■■□□ 2.55
USP39-208ENST00000455732 ZNF608Q9ULD9 1512 aaPredicted RBP30.9■■■□□ 2.54
USP39-208ENST00000455732 TARBP1Q13395 1621 aaKnown RBP30.86■■■□□ 2.53
USP39-208ENST00000455732 POLA1P09884 1462 aaPredicted RBP30.85■■■□□ 2.53
USP39-208ENST00000455732 CUX1P39880 1505 aa30.79■■■□□ 2.52
USP39-208ENST00000455732 EIF4G3O43432 1585 aaKnown RBP30.79■■■□□ 2.52
USP39-208ENST00000455732 FGD5Q6ZNL6 1462 aa30.72■■■□□ 2.51
USP39-208ENST00000455732 RAD54L2Q9Y4B4 1467 aa30.71■■■□□ 2.51
USP39-208ENST00000455732 TRIM41Q8WV44 630 aa30.71■■■□□ 2.51
USP39-208ENST00000455732 SOGA1O94964 1423 aa30.69■■■□□ 2.5
USP39-208ENST00000455732 AQRO60306 1485 aaKnown RBP eCLIP30.68■■■□□ 2.52e-6■■■■□ 22.7
USP39-208ENST00000455732 OSCARQ8IYS5 282 aa30.66■■■□□ 2.5
USP39-208ENST00000455732 WDR97A6NE52 1622 aa30.58■■■□□ 2.49
USP39-208ENST00000455732 TDRD9Q8NDG6 1382 aaKnown RBP30.55■■■□□ 2.48
USP39-208ENST00000455732 CHD1O14646 1710 aa30.5■■■□□ 2.47
USP39-208ENST00000455732 BIVM-ERCC5R4GMW8 1640 aa30.48■■■□□ 2.47
USP39-208ENST00000455732 TOP2BQ02880 1626 aa30.46■■■□□ 2.47
USP39-208ENST00000455732 WRNQ14191 1432 aaPredicted RBP eCLIP30.44■■■□□ 2.46
USP39-208ENST00000455732 SYNJ1O43426 1573 aa30.43■■■□□ 2.46
USP39-208ENST00000455732 ABCA10Q8WWZ4 1543 aa30.42■■■□□ 2.46
USP39-208ENST00000455732 GRIN2BQ13224 1484 aa30.38■■■□□ 2.45
USP39-208ENST00000455732 SNAPC4Q5SXM2 1469 aa30.38■■■□□ 2.45
USP39-208ENST00000455732 PBRM1Q86U86 1689 aa30.36■■■□□ 2.45
USP39-208ENST00000455732 ABCA5Q8WWZ7 1642 aa30.36■■■□□ 2.45
USP39-208ENST00000455732 GAPVD1Q14C86 1478 aa30.34■■■□□ 2.45
USP39-208ENST00000455732 MAGI1Q96QZ7 1491 aaPredicted RBP30.34■■■□□ 2.45
USP39-208ENST00000455732 RIMBP3CA6NJZ7 1639 aa30.3■■■□□ 2.44
USP39-208ENST00000455732 RIMBP3BA6NNM3 1639 aa30.3■■■□□ 2.44
USP39-208ENST00000455732 RIMBP3Q9UFD9 1639 aa30.3■■■□□ 2.44
USP39-208ENST00000455732 FBLN2P98095 1184 aa30.3■■■□□ 2.44
USP39-208ENST00000455732 ARHGEF11O15085 1522 aa30.22■■■□□ 2.43
USP39-208ENST00000455732 SYNJ2O15056 1496 aa30.22■■■□□ 2.43
USP39-208ENST00000455732 CHMP7Q8WUX9 453 aaPredicted RBP30.19■■■□□ 2.42
USP39-208ENST00000455732 CLASP1Q7Z460 1538 aa30.13■■■□□ 2.41
USP39-208ENST00000455732 ADAMTS12P58397 1594 aa30.07■■■□□ 2.4
USP39-208ENST00000455732 ERICH3Q5RHP9 1530 aa30.05■■■□□ 2.4
USP39-208ENST00000455732 GRIN2AQ12879 1464 aa30■■■□□ 2.39
USP39-208ENST00000455732 FHAD1B1AJZ9 1412 aa29.96■■■□□ 2.39
USP39-208ENST00000455732 ARAP1Q96P48 1450 aa29.94■■■□□ 2.38
USP39-208ENST00000455732 CYB5RLQ6IPT4 315 aa29.91■■■□□ 2.38
USP39-208ENST00000455732 NUP160Q12769 1436 aa29.89■■■□□ 2.38
USP39-208ENST00000455732 CEP170Q5SW79 1584 aa29.89■■■□□ 2.38
USP39-208ENST00000455732 KIF27Q86VH2 1401 aa29.82■■■□□ 2.36
USP39-208ENST00000455732 IGF1RP08069 1367 aa29.76■■■□□ 2.35
USP39-208ENST00000455732 SHROOM2Q13796 1616 aa29.74■■■□□ 2.35
USP39-208ENST00000455732 CUL7Q14999 1698 aa29.72■■■□□ 2.35
USP39-208ENST00000455732 ERCC6L2Q5T890 1561 aa29.69■■■□□ 2.34
USP39-208ENST00000455732 RUSC2Q8N2Y8 1516 aa29.64■■■□□ 2.34
USP39-208ENST00000455732 TRHP20396 242 aaPredicted RBP29.61■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 161.2 ms