RNA–Protein interactions for RNA: ENST00000448494.1

LINC00342-202, long intergenic non-protein coding RNA 342, humanhuman

TSL 2 BASIC

Gene LINC00342, Length 2,351 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00342-202ENST00000448494 VPS13DQ5THJ4 4388 aa5.48□□□□□ -1.53
LINC00342-202ENST00000448494 KRTAP12-1P59990 96 aa5.46□□□□□ -1.54
LINC00342-202ENST00000448494 RYR1P21817 5038 aa5.43□□□□□ -1.54
LINC00342-202ENST00000448494 J3QL48 77 aa5.4□□□□□ -1.54
LINC00342-202ENST00000448494 KRTAP3-3Q9BYR6 98 aa5.4□□□□□ -1.54
LINC00342-202ENST00000448494 PRO2289Q9P1D8 64 aa5.37□□□□□ -1.55
LINC00342-202ENST00000448494 KIAA1109Q2LD37 5005 aa5.36□□□□□ -1.55
LINC00342-202ENST00000448494 RPS29P62273 56 aaKnown RBP5.35□□□□□ -1.55
LINC00342-202ENST00000448494 DMBT1Q9UGM3 2413 aaPredicted RBP5.35□□□□□ -1.55
LINC00342-202ENST00000448494 HECTD4Q9Y4D8 3996 aa5.34□□□□□ -1.56
LINC00342-202ENST00000448494 KRTAP1-4P0C5Y4 121 aa5.33□□□□□ -1.56
LINC00342-202ENST00000448494 ABCA13Q86UQ4 5058 aa5.32□□□□□ -1.56
LINC00342-202ENST00000448494 DYNC1H1Q14204 4646 aaKnown RBP5.28□□□□□ -1.56
LINC00342-202ENST00000448494 M0QZ58 72 aa5.28□□□□□ -1.56
LINC00342-202ENST00000448494 DNAH6Q9C0G6 4158 aa5.26□□□□□ -1.57
LINC00342-202ENST00000448494 KMT2AQ03164 3969 aa5.26□□□□□ -1.57
LINC00342-202ENST00000448494 C9orf92A6NGG3 77 aa5.24□□□□□ -1.57
LINC00342-202ENST00000448494 DNAH11Q96DT5 4516 aa5.23□□□□□ -1.57
LINC00342-202ENST00000448494 PP632Q6XCG6 107 aa5.22□□□□□ -1.57
LINC00342-202ENST00000448494 KRTAP4-5Q9BYR2 181 aa5.2□□□□□ -1.58
LINC00342-202ENST00000448494 KRTAP10-8P60410 259 aa5.19□□□□□ -1.58
LINC00342-202ENST00000448494 FAT2Q9NYQ8 4349 aa5.19□□□□□ -1.58
LINC00342-202ENST00000448494 A0A1B0GVY2 172 aa5.18□□□□□ -1.58
LINC00342-202ENST00000448494 DNAH2Q9P225 4427 aa5.17□□□□□ -1.58
LINC00342-202ENST00000448494 PKHD1P08F94 4074 aa5.16□□□□□ -1.58
LINC00342-202ENST00000448494 INE1O15225 51 aa5.15□□□□□ -1.58
LINC00342-202ENST00000448494 HSPG2P98160 4391 aa5.14□□□□□ -1.59
LINC00342-202ENST00000448494 SPRR5A0A1B0GTR4 108 aa5.13□□□□□ -1.59
LINC00342-202ENST00000448494 HERC1Q15751 4861 aa5.12□□□□□ -1.59
LINC00342-202ENST00000448494 PKD1P98161 4303 aa5.12□□□□□ -1.59
LINC00342-202ENST00000448494 R4GN34 69 aa5.11□□□□□ -1.59
LINC00342-202ENST00000448494 MYCBP2O75592 4640 aa5.06□□□□□ -1.6
LINC00342-202ENST00000448494 APOBP04114 4563 aaKnown RBP5.05□□□□□ -1.6
LINC00342-202ENST00000448494 LRP1BQ9NZR2 4599 aa5.05□□□□□ -1.6
LINC00342-202ENST00000448494 DNAH5Q8TE73 4624 aa4.99□□□□□ -1.61
LINC00342-202ENST00000448494 KRTAP10-2P60368 255 aa4.98□□□□□ -1.61
LINC00342-202ENST00000448494 KRTAP10-1P60331 282 aa4.95□□□□□ -1.62
LINC00342-202ENST00000448494 UBR4Q5T4S7 5183 aa4.95□□□□□ -1.62
LINC00342-202ENST00000448494 VPS13BQ7Z7G8 4022 aa4.91□□□□□ -1.62
LINC00342-202ENST00000448494 KRTAP23-1A1A580 65 aa4.9□□□□□ -1.62
LINC00342-202ENST00000448494 FAT1Q14517 4588 aa4.89□□□□□ -1.63
LINC00342-202ENST00000448494 PKHD1L1Q86WI1 4243 aa4.89□□□□□ -1.63
LINC00342-202ENST00000448494 HMCN2Q8NDA2 5059 aa4.88□□□□□ -1.63
LINC00342-202ENST00000448494 Q5VSD8 79 aa4.85□□□□□ -1.63
LINC00342-202ENST00000448494 LRP1Q07954 4544 aaKnown RBP4.81□□□□□ -1.64
LINC00342-202ENST00000448494 SMR3BP02814 79 aaPredicted RBP4.76□□□□□ -1.65
LINC00342-202ENST00000448494 FAT3Q8TDW7 4589 aa4.73□□□□□ -1.65
LINC00342-202ENST00000448494 TNP1P09430 55 aa4.71□□□□□ -1.65
LINC00342-202ENST00000448494 LOC100996750A0A140TA64 210 aa4.7□□□□□ -1.66
LINC00342-202ENST00000448494 KRTAP4-6Q9BYQ5 205 aa4.7□□□□□ -1.66
LINC00342-202ENST00000448494 KRTAP10-4P60372 401 aaPredicted RBP4.69□□□□□ -1.66
LINC00342-202ENST00000448494 TNXBP22105 4242 aa4.69□□□□□ -1.66
LINC00342-202ENST00000448494 RNF213Q63HN8 5207 aa4.64□□□□□ -1.67
LINC00342-202ENST00000448494 LORP23490 312 aaPredicted RBP4.64□□□□□ -1.67
LINC00342-202ENST00000448494 LRP2P98164 4655 aa4.61□□□□□ -1.67
LINC00342-202ENST00000448494 MT1HL1P0DM35 61 aa4.56□□□□□ -1.68
LINC00342-202ENST00000448494 KRTAP9-2Q9BYQ4 174 aa4.53□□□□□ -1.68
LINC00342-202ENST00000448494 KRTAP9-6A0A140TA67 174 aa4.49□□□□□ -1.69
LINC00342-202ENST00000448494 FAT4Q6V0I7 4981 aa4.45□□□□□ -1.7
LINC00342-202ENST00000448494 KRTAP9-8Q9BYQ0 159 aa4.45□□□□□ -1.7
LINC00342-202ENST00000448494 LPAP08519 4548 aa4.38□□□□□ -1.71
LINC00342-202ENST00000448494 KRTAP10-10P60014 251 aa4.38□□□□□ -1.71
LINC00342-202ENST00000448494 LCE2AQ5TA79 106 aaPredicted RBP4.34□□□□□ -1.72
LINC00342-202ENST00000448494 LCE3AQ5TA76 89 aa4.32□□□□□ -1.72
LINC00342-202ENST00000448494 FLGP20930 4061 aaPredicted RBP4.32□□□□□ -1.72
LINC00342-202ENST00000448494 KRTAP8-1Q8IUC2 63 aa4.27□□□□□ -1.73
LINC00342-202ENST00000448494 MUC2Q02817 5179 aa4.26□□□□□ -1.73
LINC00342-202ENST00000448494 KRTAP10-12P60413 245 aa4.24□□□□□ -1.73
LINC00342-202ENST00000448494 KRTAP5-3Q6L8H2 238 aa4.24□□□□□ -1.73
LINC00342-202ENST00000448494 CRCT1Q9UGL9 99 aa4.22□□□□□ -1.73
LINC00342-202ENST00000448494 LCE2DQ5TA82 110 aaPredicted RBP4.21□□□□□ -1.74
LINC00342-202ENST00000448494 MUC17Q685J3 4493 aa4.2□□□□□ -1.74
LINC00342-202ENST00000448494 FSIP2Q5CZC0 6907 aa4.11□□□□□ -1.75
LINC00342-202ENST00000448494 KRTAP12-3P60328 96 aa4.1□□□□□ -1.75
LINC00342-202ENST00000448494 KRTAP19-2Q3LHN2 52 aa4.09□□□□□ -1.76
LINC00342-202ENST00000448494 KRTAP10-5P60370 271 aa4.05□□□□□ -1.76
LINC00342-202ENST00000448494 SPRR2GQ9BYE4 73 aa4.01□□□□□ -1.77
LINC00342-202ENST00000448494 KRTAP2-3P0C7H8 128 aa4□□□□□ -1.77
LINC00342-202ENST00000448494 KRTAP2-4Q9BYR9 128 aa4□□□□□ -1.77
LINC00342-202ENST00000448494 KRTAP2-1Q9BYU5 128 aa4□□□□□ -1.77
LINC00342-202ENST00000448494 KRTAP9-7A8MTY7 169 aa3.99□□□□□ -1.77
LINC00342-202ENST00000448494 KRTAP4-1Q9BYQ7 146 aa3.99□□□□□ -1.77
LINC00342-202ENST00000448494 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.96□□□□□ -1.78
LINC00342-202ENST00000448494 LCE2CQ5TA81 110 aa3.95□□□□□ -1.78
LINC00342-202ENST00000448494 LCE3CQ5T5A8 94 aa3.91□□□□□ -1.78
LINC00342-202ENST00000448494 MT1HP80294 61 aa3.91□□□□□ -1.78
LINC00342-202ENST00000448494 KRTAP19-1Q8IUB9 90 aa3.9□□□□□ -1.79
LINC00342-202ENST00000448494 KRTAP10-7P60409 375 aaPredicted RBP3.83□□□□□ -1.8
LINC00342-202ENST00000448494 SSPOA2VEC9 5147 aa3.81□□□□□ -1.8
LINC00342-202ENST00000448494 M0R2T5 61 aa3.81□□□□□ -1.8
LINC00342-202ENST00000448494 KRTAP9-6A8MVA2 160 aa3.78□□□□□ -1.8
LINC00342-202ENST00000448494 USH2AO75445 5202 aa3.75□□□□□ -1.81
LINC00342-202ENST00000448494 MT1XP80297 61 aa3.75□□□□□ -1.81
LINC00342-202ENST00000448494 FCGBPQ9Y6R7 5405 aaPredicted RBP3.74□□□□□ -1.81
LINC00342-202ENST00000448494 KRTAP19-8Q3LI54 63 aa3.71□□□□□ -1.81
LINC00342-202ENST00000448494 KRTAP4-7Q9BYR0 210 aa3.71□□□□□ -1.81
LINC00342-202ENST00000448494 KRTAP4-8A0A0G2JLE6 195 aa3.7□□□□□ -1.82
LINC00342-202ENST00000448494 MACF1Q9UPN3 7388 aaKnown RBP3.67□□□□□ -1.82
LINC00342-202ENST00000448494 KRTAP19-5Q3LI72 72 aa3.67□□□□□ -1.82
LINC00342-202ENST00000448494 KRTAP4-8Q9BYQ9 185 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms