RNA–Protein interactions for RNA: ENST00000438964.6

ACTN1-204, Transcript of actinin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene ACTN1, Length 3,043 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-204ENST00000438964 LRP1Q07954 4544 aaKnown RBP6.98□□□□□ -1.29
ACTN1-204ENST00000438964 RPL37P61927 97 aaKnown RBP6.96□□□□□ -1.29
ACTN1-204ENST00000438964 NDUFAF8A1L188 74 aa6.95□□□□□ -1.3
ACTN1-204ENST00000438964 KRTAP10-6P60371 365 aaPredicted RBP6.95□□□□□ -1.3
ACTN1-204ENST00000438964 APOBP04114 4563 aaKnown RBP6.93□□□□□ -1.3
ACTN1-204ENST00000438964 KRTAP3-3Q9BYR6 98 aa6.89□□□□□ -1.31
ACTN1-204ENST00000438964 KRTAP10-8P60410 259 aa6.88□□□□□ -1.31
ACTN1-204ENST00000438964 PKHD1L1Q86WI1 4243 aa6.87□□□□□ -1.31
ACTN1-204ENST00000438964 LPAP08519 4548 aa6.86□□□□□ -1.31
ACTN1-204ENST00000438964 KRTAP3-2Q9BYR7 98 aa6.85□□□□□ -1.31
ACTN1-204ENST00000438964 KRTAP12-2P59991 146 aa6.85□□□□□ -1.31
ACTN1-204ENST00000438964 KRTAP21-3Q3LHN1 58 aa6.84□□□□□ -1.31
ACTN1-204ENST00000438964 RPS29P62273 56 aaKnown RBP6.8□□□□□ -1.32
ACTN1-204ENST00000438964 S4R3F8 94 aa6.8□□□□□ -1.32
ACTN1-204ENST00000438964 FAT3Q8TDW7 4589 aa6.79□□□□□ -1.32
ACTN1-204ENST00000438964 KRTAP15-1Q3LI76 137 aa6.75□□□□□ -1.33
ACTN1-204ENST00000438964 KMT2CQ8NEZ4 4911 aaKnown RBP6.73□□□□□ -1.33
ACTN1-204ENST00000438964 KRTAP10-4P60372 401 aaPredicted RBP6.69□□□□□ -1.34
ACTN1-204ENST00000438964 KRTAP12-1P59990 96 aa6.68□□□□□ -1.34
ACTN1-204ENST00000438964 LRP2P98164 4655 aa6.67□□□□□ -1.34
ACTN1-204ENST00000438964 TNXBP22105 4242 aa6.66□□□□□ -1.34
ACTN1-204ENST00000438964 XP32Q5T750 250 aa6.62□□□□□ -1.35
ACTN1-204ENST00000438964 RYR1P21817 5038 aa6.56□□□□□ -1.36
ACTN1-204ENST00000438964 RYR3Q15413 4870 aa6.53□□□□□ -1.36
ACTN1-204ENST00000438964 A0A1B0GVY2 172 aa6.49□□□□□ -1.37
ACTN1-204ENST00000438964 RYR2Q92736 4967 aa6.48□□□□□ -1.37
ACTN1-204ENST00000438964 M0QZ58 72 aa6.48□□□□□ -1.37
ACTN1-204ENST00000438964 KIAA1109Q2LD37 5005 aa6.45□□□□□ -1.38
ACTN1-204ENST00000438964 ABCA13Q86UQ4 5058 aa6.43□□□□□ -1.38
ACTN1-204ENST00000438964 Q5VSD8 79 aa6.42□□□□□ -1.38
ACTN1-204ENST00000438964 KRTAP17-1Q9BYP8 105 aa6.41□□□□□ -1.38
ACTN1-204ENST00000438964 R4GN34 69 aa6.39□□□□□ -1.39
ACTN1-204ENST00000438964 LORP23490 312 aaPredicted RBP6.39□□□□□ -1.39
ACTN1-204ENST00000438964 PLAC4Q8WY50 150 aa6.36□□□□□ -1.39
ACTN1-204ENST00000438964 EPPK1P58107 5090 aaKnown RBP6.31□□□□□ -1.4
ACTN1-204ENST00000438964 A0A0A0MQY5 61 aa6.31□□□□□ -1.4
ACTN1-204ENST00000438964 MUC2Q02817 5179 aa6.3□□□□□ -1.4
ACTN1-204ENST00000438964 LUZP6Q538Z0 58 aa6.26□□□□□ -1.41
ACTN1-204ENST00000438964 MT1HL1P0DM35 61 aa6.22□□□□□ -1.41
ACTN1-204ENST00000438964 CAMK2N1Q7Z7J9 78 aa6.16□□□□□ -1.42
ACTN1-204ENST00000438964 MUC17Q685J3 4493 aa6.08□□□□□ -1.44
ACTN1-204ENST00000438964 KRTAP4-1Q9BYQ7 146 aa6.05□□□□□ -1.44
ACTN1-204ENST00000438964 KRTAP4-5Q9BYR2 181 aa6.02□□□□□ -1.45
ACTN1-204ENST00000438964 PCLOQ9Y6V0 5065 aa5.94□□□□□ -1.46
ACTN1-204ENST00000438964 FAT4Q6V0I7 4981 aa5.93□□□□□ -1.46
ACTN1-204ENST00000438964 BIRC6Q9NR09 4857 aa5.92□□□□□ -1.46
ACTN1-204ENST00000438964 PP632Q6XCG6 107 aa5.88□□□□□ -1.47
ACTN1-204ENST00000438964 SEC61BP60468 96 aaKnown RBP5.85□□□□□ -1.47
ACTN1-204ENST00000438964 HERC2O95714 4834 aa5.85□□□□□ -1.47
ACTN1-204ENST00000438964 TNP1P09430 55 aa5.81□□□□□ -1.48
ACTN1-204ENST00000438964 J3QL48 77 aa5.77□□□□□ -1.49
ACTN1-204ENST00000438964 KRTAP19-2Q3LHN2 52 aa5.77□□□□□ -1.49
ACTN1-204ENST00000438964 FLGP20930 4061 aaPredicted RBP5.74□□□□□ -1.49
ACTN1-204ENST00000438964 HERC1Q15751 4861 aa5.7□□□□□ -1.5
ACTN1-204ENST00000438964 RNF213Q63HN8 5207 aa5.7□□□□□ -1.5
ACTN1-204ENST00000438964 HMCN2Q8NDA2 5059 aa5.67□□□□□ -1.5
ACTN1-204ENST00000438964 SPRR5A0A1B0GTR4 108 aa5.64□□□□□ -1.51
ACTN1-204ENST00000438964 LCE3AQ5TA76 89 aa5.6□□□□□ -1.51
ACTN1-204ENST00000438964 UBR4Q5T4S7 5183 aa5.51□□□□□ -1.53
ACTN1-204ENST00000438964 M0R2T5 61 aa5.49□□□□□ -1.53
ACTN1-204ENST00000438964 KRTAP19-1Q8IUB9 90 aa5.45□□□□□ -1.54
ACTN1-204ENST00000438964 KRTAP23-1A1A580 65 aa5.42□□□□□ -1.54
ACTN1-204ENST00000438964 PRO2289Q9P1D8 64 aa5.37□□□□□ -1.55
ACTN1-204ENST00000438964 KMT2DO14686 5537 aa5.36□□□□□ -1.55
ACTN1-204ENST00000438964 KRTAP10-10P60014 251 aa5.34□□□□□ -1.55
ACTN1-204ENST00000438964 SPRR2GQ9BYE4 73 aa5.34□□□□□ -1.55
ACTN1-204ENST00000438964 LCE2CQ5TA81 110 aa5.34□□□□□ -1.56
ACTN1-204ENST00000438964 MT1FP04733 61 aa5.29□□□□□ -1.56
ACTN1-204ENST00000438964 USH2AO75445 5202 aa5.28□□□□□ -1.56
ACTN1-204ENST00000438964 KRTAP12-3P60328 96 aa5.24□□□□□ -1.57
ACTN1-204ENST00000438964 KRTAP8-1Q8IUC2 63 aa5.22□□□□□ -1.57
ACTN1-204ENST00000438964 MT2AP02795 61 aa5.21□□□□□ -1.57
ACTN1-204ENST00000438964 MT1HP80294 61 aa5.19□□□□□ -1.58
ACTN1-204ENST00000438964 KRTAP10-5P60370 271 aa5.18□□□□□ -1.58
ACTN1-204ENST00000438964 KRTAP10-7P60409 375 aaPredicted RBP5.18□□□□□ -1.58
ACTN1-204ENST00000438964 KRTAP10-12P60413 245 aa5.18□□□□□ -1.58
ACTN1-204ENST00000438964 INE1O15225 51 aa5.17□□□□□ -1.58
ACTN1-204ENST00000438964 MT1XP80297 61 aa5.16□□□□□ -1.58
ACTN1-204ENST00000438964 MT1BP07438 61 aa5.11□□□□□ -1.59
ACTN1-204ENST00000438964 KRTAP9-8Q9BYQ0 159 aa5.1□□□□□ -1.59
ACTN1-204ENST00000438964 KRTAP19-8Q3LI54 63 aa5□□□□□ -1.61
ACTN1-204ENST00000438964 KRTAP19-5Q3LI72 72 aa4.98□□□□□ -1.61
ACTN1-204ENST00000438964 KRTAP9-6A8MVA2 160 aa4.92□□□□□ -1.62
ACTN1-204ENST00000438964 KRTAP4-7Q9BYR0 210 aa4.92□□□□□ -1.62
ACTN1-204ENST00000438964 KRTAP4-8A0A0G2JLE6 195 aa4.91□□□□□ -1.62
ACTN1-204ENST00000438964 KRTAP4-8Q9BYQ9 185 aa4.91□□□□□ -1.62
ACTN1-204ENST00000438964 LCE3CQ5T5A8 94 aa4.9□□□□□ -1.62
ACTN1-204ENST00000438964 KRTAP9-3Q9BYQ3 159 aa4.84□□□□□ -1.63
ACTN1-204ENST00000438964 FSIP2Q5CZC0 6907 aa4.81□□□□□ -1.64
ACTN1-204ENST00000438964 LCE2BO14633 110 aa4.72□□□□□ -1.65
ACTN1-204ENST00000438964 DSTQ03001 7570 aaKnown RBP4.69□□□□□ -1.66
ACTN1-204ENST00000438964 FCGBPQ9Y6R7 5405 aaPredicted RBP4.61□□□□□ -1.67
ACTN1-204ENST00000438964 KRTAP2-3P0C7H8 128 aa4.61□□□□□ -1.67
ACTN1-204ENST00000438964 KRTAP2-4Q9BYR9 128 aa4.61□□□□□ -1.67
ACTN1-204ENST00000438964 KRTAP2-1Q9BYU5 128 aa4.61□□□□□ -1.67
ACTN1-204ENST00000438964 KRTAP19-7Q3SYF9 63 aa4.59□□□□□ -1.67
ACTN1-204ENST00000438964 LCE2AQ5TA79 106 aaPredicted RBP4.57□□□□□ -1.68
ACTN1-204ENST00000438964 MUC12Q9UKN1 5478 aa4.57□□□□□ -1.68
ACTN1-204ENST00000438964 LOC100996750A0A140TA64 210 aa4.56□□□□□ -1.68
ACTN1-204ENST00000438964 CRCT1Q9UGL9 99 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms