RNA–Protein interactions for RNA: ENST00000427478.6

CNEP1R1-202, Transcript of CTD nuclear envelope phosphatase 1 regulatory subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNEP1R1, Length 2,117 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNEP1R1-202ENST00000427478 SVIPQ8NHG7 77 aa11.08□□□□□ -0.64
CNEP1R1-202ENST00000427478 LCA10Q71F78 164 aa11.06□□□□□ -0.64
CNEP1R1-202ENST00000427478 CDC42SE1Q9NRR8 79 aa11.02□□□□□ -0.65
CNEP1R1-202ENST00000427478 SEC61GP60059 68 aa11.01□□□□□ -0.65
CNEP1R1-202ENST00000427478 SEC61BP60468 96 aaKnown RBP10.97□□□□□ -0.65
CNEP1R1-202ENST00000427478 S4R3F8 94 aa10.96□□□□□ -0.65
CNEP1R1-202ENST00000427478 KRTAP3-3Q9BYR6 98 aa10.95□□□□□ -0.66
CNEP1R1-202ENST00000427478 H1FX-AS1Q4G0G2 97 aa10.93□□□□□ -0.66
CNEP1R1-202ENST00000427478 RBM12B-AS1Q9P1G2 102 aa10.93□□□□□ -0.66
CNEP1R1-202ENST00000427478 UQCR11O14957 56 aa10.9□□□□□ -0.66
CNEP1R1-202ENST00000427478 MIR22HGQ0VDD5 57 aa10.84□□□□□ -0.67
CNEP1R1-202ENST00000427478 SPATA8Q6RVD6 105 aa10.82□□□□□ -0.68
CNEP1R1-202ENST00000427478 KRTAP4-1Q9BYQ7 146 aa10.81□□□□□ -0.68
CNEP1R1-202ENST00000427478 PCLOQ9Y6V0 5065 aa10.79□□□□□ -0.68
CNEP1R1-202ENST00000427478 MUC17Q685J3 4493 aa10.77□□□□□ -0.69
CNEP1R1-202ENST00000427478 A0A1B0GU33 70 aa10.75□□□□□ -0.69
CNEP1R1-202ENST00000427478 PMAIP1Q13794 54 aa10.73□□□□□ -0.69
CNEP1R1-202ENST00000427478 H0YAA0 97 aa10.68□□□□□ -0.7
CNEP1R1-202ENST00000427478 KRTAP10-6P60371 365 aaPredicted RBP10.66□□□□□ -0.7
CNEP1R1-202ENST00000427478 HERC1Q15751 4861 aa10.65□□□□□ -0.7
CNEP1R1-202ENST00000427478 KRTAP3-2Q9BYR7 98 aa10.64□□□□□ -0.71
CNEP1R1-202ENST00000427478 CSAG1Q6PB30 78 aa10.63□□□□□ -0.71
CNEP1R1-202ENST00000427478 A6NN06 94 aa10.61□□□□□ -0.71
CNEP1R1-202ENST00000427478 HMCN2Q8NDA2 5059 aa10.56□□□□□ -0.72
CNEP1R1-202ENST00000427478 P0C880 135 aa10.55□□□□□ -0.72
CNEP1R1-202ENST00000427478 ADM2Q7Z4H4 148 aa10.55□□□□□ -0.72
CNEP1R1-202ENST00000427478 KRTAP19-2Q3LHN2 52 aa10.52□□□□□ -0.72
CNEP1R1-202ENST00000427478 KRTAP13-4Q3LI77 160 aa10.47□□□□□ -0.73
CNEP1R1-202ENST00000427478 MUC2Q02817 5179 aa10.41□□□□□ -0.74
CNEP1R1-202ENST00000427478 KTN1-AS1Q86SY8 53 aa10.37□□□□□ -0.75
CNEP1R1-202ENST00000427478 A0A0D9SG42 100 aa10.34□□□□□ -0.75
CNEP1R1-202ENST00000427478 K7ERS5 55 aa10.24□□□□□ -0.77
CNEP1R1-202ENST00000427478 M0QZ58 72 aa10.21□□□□□ -0.77
CNEP1R1-202ENST00000427478 FLGP20930 4061 aaPredicted RBP10.17□□□□□ -0.78
CNEP1R1-202ENST00000427478 LCE2CQ5TA81 110 aa10.14□□□□□ -0.79
CNEP1R1-202ENST00000427478 LORP23490 312 aaPredicted RBP10.12□□□□□ -0.79
CNEP1R1-202ENST00000427478 R4GN34 69 aa10.12□□□□□ -0.79
CNEP1R1-202ENST00000427478 PRAC1Q96KF2 57 aa10.09□□□□□ -0.79
CNEP1R1-202ENST00000427478 KRTAP12-2P59991 146 aa10.08□□□□□ -0.8
CNEP1R1-202ENST00000427478 UBR4Q5T4S7 5183 aa10.06□□□□□ -0.8
CNEP1R1-202ENST00000427478 KRTAP12-1P59990 96 aa10.05□□□□□ -0.8
CNEP1R1-202ENST00000427478 SPINT4Q6UDR6 99 aa10.04□□□□□ -0.8
CNEP1R1-202ENST00000427478 LINC01554Q52M75 96 aa10.04□□□□□ -0.8
CNEP1R1-202ENST00000427478 RNF213Q63HN8 5207 aa10.02□□□□□ -0.81
CNEP1R1-202ENST00000427478 FAT4Q6V0I7 4981 aa9.97□□□□□ -0.81
CNEP1R1-202ENST00000427478 MT1HP80294 61 aa9.92□□□□□ -0.82
CNEP1R1-202ENST00000427478 ROMO1P60602 79 aa9.91□□□□□ -0.82
CNEP1R1-202ENST00000427478 M0R2T5 61 aa9.9□□□□□ -0.82
CNEP1R1-202ENST00000427478 CRIPTQ9P021 101 aa9.79□□□□□ -0.84
CNEP1R1-202ENST00000427478 KRTAP25-1Q3LHN0 102 aa9.68□□□□□ -0.86
CNEP1R1-202ENST00000427478 MT2AP02795 61 aa9.62□□□□□ -0.87
CNEP1R1-202ENST00000427478 KRTAP9-8Q9BYQ0 159 aa9.6□□□□□ -0.87
CNEP1R1-202ENST00000427478 MT1FP04733 61 aa9.59□□□□□ -0.87
CNEP1R1-202ENST00000427478 KRTAP10-10P60014 251 aa9.56□□□□□ -0.88
CNEP1R1-202ENST00000427478 SPRR2GQ9BYE4 73 aa9.56□□□□□ -0.88
CNEP1R1-202ENST00000427478 CAMK2N1Q7Z7J9 78 aa9.54□□□□□ -0.88
CNEP1R1-202ENST00000427478 KRTAP19-1Q8IUB9 90 aa9.54□□□□□ -0.88
CNEP1R1-202ENST00000427478 C10orf95Q9H7T3 257 aa9.52□□□□□ -0.89
CNEP1R1-202ENST00000427478 PLAC4Q8WY50 150 aa9.34□□□□□ -0.91
CNEP1R1-202ENST00000427478 KRTAP19-8Q3LI54 63 aa9.24□□□□□ -0.93
CNEP1R1-202ENST00000427478 LCE2AQ5TA79 106 aaPredicted RBP9.23□□□□□ -0.93
CNEP1R1-202ENST00000427478 KRTAP9-3Q9BYQ3 159 aa9.22□□□□□ -0.93
CNEP1R1-202ENST00000427478 MT1BP07438 61 aa9.14□□□□□ -0.95
CNEP1R1-202ENST00000427478 TNP1P09430 55 aa9.1□□□□□ -0.95
CNEP1R1-202ENST00000427478 PP632Q6XCG6 107 aa8.98□□□□□ -0.97
CNEP1R1-202ENST00000427478 LCE2BO14633 110 aa8.95□□□□□ -0.98
CNEP1R1-202ENST00000427478 MT1XP80297 61 aa8.93□□□□□ -0.98
CNEP1R1-202ENST00000427478 KRTAP10-5P60370 271 aa8.93□□□□□ -0.98
CNEP1R1-202ENST00000427478 KRTAP23-1A1A580 65 aa8.83□□□□□ -1
CNEP1R1-202ENST00000427478 PRO2289Q9P1D8 64 aa8.73□□□□□ -1.01
CNEP1R1-202ENST00000427478 LCE3AQ5TA76 89 aa8.71□□□□□ -1.02
CNEP1R1-202ENST00000427478 KRTAP15-1Q3LI76 137 aa8.66□□□□□ -1.02
CNEP1R1-202ENST00000427478 KRTAP10-7P60409 375 aaPredicted RBP8.63□□□□□ -1.03
CNEP1R1-202ENST00000427478 USH2AO75445 5202 aa8.62□□□□□ -1.03
CNEP1R1-202ENST00000427478 KRTAP10-12P60413 245 aa8.59□□□□□ -1.03
CNEP1R1-202ENST00000427478 KRTAP8-1Q8IUC2 63 aa8.47□□□□□ -1.05
CNEP1R1-202ENST00000427478 KRTAP12-3P60328 96 aa8.31□□□□□ -1.08
CNEP1R1-202ENST00000427478 SSPOA2VEC9 5147 aa8.31□□□□□ -1.08
CNEP1R1-202ENST00000427478 KRTAP19-6Q3LI70 58 aa8.24□□□□□ -1.09
CNEP1R1-202ENST00000427478 KRTAP4-8A0A0G2JLE6 195 aa8.23□□□□□ -1.09
CNEP1R1-202ENST00000427478 KRTAP4-8Q9BYQ9 185 aa8.23□□□□□ -1.09
CNEP1R1-202ENST00000427478 NDUFAF8A1L188 74 aa8.2□□□□□ -1.1
CNEP1R1-202ENST00000427478 LCE2DQ5TA82 110 aaPredicted RBP8.19□□□□□ -1.1
CNEP1R1-202ENST00000427478 KMT2DO14686 5537 aa8.17□□□□□ -1.1
CNEP1R1-202ENST00000427478 KRTAP19-5Q3LI72 72 aa8.17□□□□□ -1.1
CNEP1R1-202ENST00000427478 SPRR5A0A1B0GTR4 108 aa8.13□□□□□ -1.11
CNEP1R1-202ENST00000427478 FSIP2Q5CZC0 6907 aa8.11□□□□□ -1.11
CNEP1R1-202ENST00000427478 LUZP6Q538Z0 58 aa8.05□□□□□ -1.12
CNEP1R1-202ENST00000427478 KRTAP19-7Q3SYF9 63 aa7.96□□□□□ -1.13
CNEP1R1-202ENST00000427478 FCGBPQ9Y6R7 5405 aaPredicted RBP7.81□□□□□ -1.16
CNEP1R1-202ENST00000427478 MT1EP04732 61 aa7.79□□□□□ -1.16
CNEP1R1-202ENST00000427478 LCE3CQ5T5A8 94 aa7.79□□□□□ -1.16
CNEP1R1-202ENST00000427478 H3BS24 57 aa7.78□□□□□ -1.16
CNEP1R1-202ENST00000427478 KRTAP9-2Q9BYQ4 174 aa7.76□□□□□ -1.17
CNEP1R1-202ENST00000427478 MT1LQ93083 61 aa7.69□□□□□ -1.18
CNEP1R1-202ENST00000427478 KRTAP4-7Q9BYR0 210 aa7.6□□□□□ -1.19
CNEP1R1-202ENST00000427478 KRTAP19-4Q3LI73 84 aa7.54□□□□□ -1.2
CNEP1R1-202ENST00000427478 CRCT1Q9UGL9 99 aa7.52□□□□□ -1.2
CNEP1R1-202ENST00000427478 KRTAP9-6A8MVA2 160 aa7.44□□□□□ -1.22
CNEP1R1-202ENST00000427478 SPRR2FQ96RM1 72 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms