RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 SPART-AS1P0CW21 52 aa1.28□□□□□ -2.2
LINC01040-201ENST00000425048 SPACA4Q8TDM5 124 aa1.28□□□□□ -2.2
LINC01040-201ENST00000425048 TRRAPQ9Y4A5 3859 aa1.28□□□□□ -2.2
LINC01040-201ENST00000425048 BSNQ9UPA5 3926 aa1.28□□□□□ -2.2
LINC01040-201ENST00000425048 CMYA5Q8N3K9 4069 aa1.28□□□□□ -2.2
LINC01040-201ENST00000425048 HIVEP3Q5T1R4 2406 aa1.28□□□□□ -2.2
LINC01040-201ENST00000425048 LRRK2Q5S007 2527 aa1.28□□□□□ -2.2
LINC01040-201ENST00000425048 APCP25054 2843 aa1.28□□□□□ -2.2
LINC01040-201ENST00000425048 ATMQ13315 3056 aa1.28□□□□□ -2.2
LINC01040-201ENST00000425048 MYO15AQ9UKN7 3530 aa1.27□□□□□ -2.21
LINC01040-201ENST00000425048 ANK2Q01484 3957 aa1.27□□□□□ -2.21
LINC01040-201ENST00000425048 DEFB135Q30KP9 77 aa1.27□□□□□ -2.21
LINC01040-201ENST00000425048 SPINK6Q6UWN8 80 aa1.27□□□□□ -2.21
LINC01040-201ENST00000425048 PLAC4Q8WY50 150 aa1.27□□□□□ -2.21
LINC01040-201ENST00000425048 PRRC2CQ9Y520 2896 aaKnown RBP1.27□□□□□ -2.21
LINC01040-201ENST00000425048 PKD1L1Q8TDX9 2849 aa1.27□□□□□ -2.21
LINC01040-201ENST00000425048 BIRC6Q9NR09 4857 aa1.27□□□□□ -2.21
LINC01040-201ENST00000425048 CELSR1Q9NYQ6 3014 aa1.26□□□□□ -2.21
LINC01040-201ENST00000425048 Q6ZRN7 208 aaPredicted RBP1.26□□□□□ -2.21
LINC01040-201ENST00000425048 DEFB124Q8NES8 71 aa1.26□□□□□ -2.21
LINC01040-201ENST00000425048 S4R3F8 94 aa1.26□□□□□ -2.21
LINC01040-201ENST00000425048 POLQO75417 2590 aa1.26□□□□□ -2.21
LINC01040-201ENST00000425048 DNAH8Q96JB1 4490 aa1.26□□□□□ -2.21
LINC01040-201ENST00000425048 LRBAP50851 2863 aa1.26□□□□□ -2.21
LINC01040-201ENST00000425048 FLNCQ14315 2725 aa1.25□□□□□ -2.21
LINC01040-201ENST00000425048 DNAH11Q96DT5 4516 aa1.25□□□□□ -2.21
LINC01040-201ENST00000425048 DYNC2H1Q8NCM8 4307 aaKnown RBP1.25□□□□□ -2.21
LINC01040-201ENST00000425048 CREBBPQ92793 2442 aa1.25□□□□□ -2.21
LINC01040-201ENST00000425048 RIF1Q5UIP0 2472 aaKnown RBP1.24□□□□□ -2.21
LINC01040-201ENST00000425048 PDZD2O15018 2839 aa1.24□□□□□ -2.21
LINC01040-201ENST00000425048 KRTAP21-3Q3LHN1 58 aa1.24□□□□□ -2.21
LINC01040-201ENST00000425048 PRKDCP78527 4128 aaKnown RBP1.24□□□□□ -2.21
LINC01040-201ENST00000425048 DNAH7Q8WXX0 4024 aa1.24□□□□□ -2.21
LINC01040-201ENST00000425048 TLN1Q9Y490 2541 aaKnown RBP1.24□□□□□ -2.21
LINC01040-201ENST00000425048 VPS13CQ709C8 3753 aa1.24□□□□□ -2.21
LINC01040-201ENST00000425048 DNAH6Q9C0G6 4158 aa1.23□□□□□ -2.21
LINC01040-201ENST00000425048 TLN2Q9Y4G6 2542 aa1.23□□□□□ -2.21
LINC01040-201ENST00000425048 A0A0D9SG42 100 aa1.23□□□□□ -2.21
LINC01040-201ENST00000425048 DEFB123Q8N688 67 aa1.23□□□□□ -2.21
LINC01040-201ENST00000425048 NBEAL1Q6ZS30 2694 aa1.23□□□□□ -2.21
LINC01040-201ENST00000425048 FLNAP21333 2647 aaKnown RBP1.22□□□□□ -2.21
LINC01040-201ENST00000425048 ATRQ13535 2644 aa1.22□□□□□ -2.21
LINC01040-201ENST00000425048 EPPK1P58107 5090 aaKnown RBP1.22□□□□□ -2.21
LINC01040-201ENST00000425048 R4GN34 69 aa1.22□□□□□ -2.21
LINC01040-201ENST00000425048 SONP18583 2426 aaKnown RBP1.22□□□□□ -2.21
LINC01040-201ENST00000425048 ZANQ9Y493 2812 aa1.22□□□□□ -2.21
LINC01040-201ENST00000425048 DNAH3Q8TD57 4116 aa1.22□□□□□ -2.21
LINC01040-201ENST00000425048 CUBNO60494 3623 aa1.22□□□□□ -2.21
LINC01040-201ENST00000425048 DNAH2Q9P225 4427 aa1.21□□□□□ -2.22
LINC01040-201ENST00000425048 SVEP1Q4LDE5 3571 aa1.21□□□□□ -2.22
LINC01040-201ENST00000425048 INE1O15225 51 aa1.21□□□□□ -2.22
LINC01040-201ENST00000425048 APLNQ9ULZ1 77 aa1.21□□□□□ -2.22
LINC01040-201ENST00000425048 NF1P21359 2839 aa1.21□□□□□ -2.22
LINC01040-201ENST00000425048 DNAH17Q9UFH2 4485 aa1.2□□□□□ -2.22
LINC01040-201ENST00000425048 CSMD3Q7Z407 3707 aa1.2□□□□□ -2.22
LINC01040-201ENST00000425048 MEGF8Q7Z7M0 2845 aa1.2□□□□□ -2.22
LINC01040-201ENST00000425048 ACACBO00763 2458 aa1.2□□□□□ -2.22
LINC01040-201ENST00000425048 CRYBG3Q68DQ2 2970 aa1.2□□□□□ -2.22
LINC01040-201ENST00000425048 LYSTQ99698 3801 aa1.2□□□□□ -2.22
LINC01040-201ENST00000425048 ZFYVE26Q68DK2 2539 aa1.2□□□□□ -2.22
LINC01040-201ENST00000425048 DNAH10Q8IVF4 4471 aa1.2□□□□□ -2.22
LINC01040-201ENST00000425048 KMT2CQ8NEZ4 4911 aaKnown RBP1.2□□□□□ -2.22
LINC01040-201ENST00000425048 HUWE1Q7Z6Z7 4374 aaKnown RBP1.19□□□□□ -2.22
LINC01040-201ENST00000425048 ADGRG4Q8IZF6 3080 aa1.19□□□□□ -2.22
LINC01040-201ENST00000425048 MYCBP2O75592 4640 aa1.19□□□□□ -2.22
LINC01040-201ENST00000425048 GPR98Q8WXG9 6306 aa1.19□□□□□ -2.22
LINC01040-201ENST00000425048 UTP20O75691 2785 aaKnown RBP1.19□□□□□ -2.22
LINC01040-201ENST00000425048 HECTD4Q9Y4D8 3996 aa1.19□□□□□ -2.22
LINC01040-201ENST00000425048 UBE2DNLQ8IWF7 75 aa1.18□□□□□ -2.22
LINC01040-201ENST00000425048 SACSQ9NZJ4 4579 aa1.18□□□□□ -2.22
LINC01040-201ENST00000425048 DNAH9Q9NYC9 4486 aa1.18□□□□□ -2.22
LINC01040-201ENST00000425048 CEP295Q9C0D2 2601 aa1.18□□□□□ -2.22
LINC01040-201ENST00000425048 SRRM2Q9UQ35 2752 aaKnown RBP1.17□□□□□ -2.22
LINC01040-201ENST00000425048 CSMD2Q7Z408 3487 aa1.17□□□□□ -2.22
LINC01040-201ENST00000425048 MTORP42345 2549 aa1.16□□□□□ -2.22
LINC01040-201ENST00000425048 DMBT1Q9UGM3 2413 aaPredicted RBP1.16□□□□□ -2.22
LINC01040-201ENST00000425048 RYR2Q92736 4967 aa1.14□□□□□ -2.23
LINC01040-201ENST00000425048 CENPEQ02224 2701 aa1.14□□□□□ -2.23
LINC01040-201ENST00000425048 NSD1Q96L73 2696 aaPredicted RBP1.14□□□□□ -2.23
LINC01040-201ENST00000425048 M0QZ58 72 aa1.13□□□□□ -2.23
LINC01040-201ENST00000425048 HIVEP1P15822 2718 aa1.13□□□□□ -2.23
LINC01040-201ENST00000425048 PKHD1L1Q86WI1 4243 aa1.13□□□□□ -2.23
LINC01040-201ENST00000425048 ABCA13Q86UQ4 5058 aa1.12□□□□□ -2.23
LINC01040-201ENST00000425048 USP9YO00507 2555 aaPredicted RBP1.12□□□□□ -2.23
LINC01040-201ENST00000425048 KMT2AQ03164 3969 aa1.11□□□□□ -2.23
LINC01040-201ENST00000425048 TGP01266 2768 aa1.11□□□□□ -2.23
LINC01040-201ENST00000425048 PKD1P98161 4303 aa1.11□□□□□ -2.23
LINC01040-201ENST00000425048 SMR3AQ99954 134 aa1.11□□□□□ -2.23
LINC01040-201ENST00000425048 HERC1Q15751 4861 aa1.11□□□□□ -2.23
LINC01040-201ENST00000425048 NIPBLQ6KC79 2804 aaeCLIP1.11□□□□□ -2.23
LINC01040-201ENST00000425048 MXRA5Q9NR99 2828 aa1.11□□□□□ -2.23
LINC01040-201ENST00000425048 APOBP04114 4563 aaKnown RBP1.1□□□□□ -2.23
LINC01040-201ENST00000425048 COL7A1Q02388 2944 aa1.1□□□□□ -2.23
LINC01040-201ENST00000425048 DNAH5Q8TE73 4624 aa1.1□□□□□ -2.23
LINC01040-201ENST00000425048 VPS13BQ7Z7G8 4022 aa1.1□□□□□ -2.23
LINC01040-201ENST00000425048 RPS29P62273 56 aaKnown RBP1.1□□□□□ -2.23
LINC01040-201ENST00000425048 HERC2O95714 4834 aa1.1□□□□□ -2.23
LINC01040-201ENST00000425048 ZNF469Q96JG9 3925 aaPredicted RBP1.09□□□□□ -2.23
LINC01040-201ENST00000425048 STAB2Q8WWQ8 2551 aa1.09□□□□□ -2.23
LINC01040-201ENST00000425048 FLGP20930 4061 aaPredicted RBP1.09□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms