RNA–Protein interactions for RNA: ENST00000409783.6

PTCD3-203, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 587 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-203ENST00000409783 CSAG1Q6PB30 78 aa10.45□□□□□ -0.74
PTCD3-203ENST00000409783 USH2AO75445 5202 aa10.45□□□□□ -0.74
PTCD3-203ENST00000409783 TRAV7A0A075B6U4 112 aa10.39□□□□□ -0.75
PTCD3-203ENST00000409783 A8MUN3 132 aa10.39□□□□□ -0.75
PTCD3-203ENST00000409783 SMIM20Q8N5G0 67 aa10.39□□□□□ -0.75
PTCD3-203ENST00000409783 SSPOA2VEC9 5147 aa10.3□□□□□ -0.76
PTCD3-203ENST00000409783 DMAC1Q96GE9 116 aa10.25□□□□□ -0.77
PTCD3-203ENST00000409783 NDUFC1O43677 76 aa10.24□□□□□ -0.77
PTCD3-203ENST00000409783 KRTAP19-1Q8IUB9 90 aa10.19□□□□□ -0.78
PTCD3-203ENST00000409783 SERP2Q8N6R1 65 aa10.17□□□□□ -0.78
PTCD3-203ENST00000409783 SNURFQ9Y675 71 aa10.15□□□□□ -0.78
PTCD3-203ENST00000409783 H0YAA0 97 aa10.13□□□□□ -0.79
PTCD3-203ENST00000409783 SPRR2GQ9BYE4 73 aa10.09□□□□□ -0.79
PTCD3-203ENST00000409783 C20orf197Q8N268 126 aa10.08□□□□□ -0.8
PTCD3-203ENST00000409783 KRTAP19-6Q3LI70 58 aa10.03□□□□□ -0.8
PTCD3-203ENST00000409783 ACYP2P14621 99 aa10.02□□□□□ -0.81
PTCD3-203ENST00000409783 CRIPTQ9P021 101 aa10□□□□□ -0.81
PTCD3-203ENST00000409783 KRTAP19-8Q3LI54 63 aa9.99□□□□□ -0.81
PTCD3-203ENST00000409783 ADM2Q7Z4H4 148 aa9.99□□□□□ -0.81
PTCD3-203ENST00000409783 FCGBPQ9Y6R7 5405 aaPredicted RBP9.98□□□□□ -0.81
PTCD3-203ENST00000409783 SPANXA2-OT1Q8N9U9 137 aa9.97□□□□□ -0.81
PTCD3-203ENST00000409783 MT1BP07438 61 aa9.96□□□□□ -0.82
PTCD3-203ENST00000409783 COX7CP15954 63 aa9.95□□□□□ -0.82
PTCD3-203ENST00000409783 Q5VV11 94 aa9.88□□□□□ -0.83
PTCD3-203ENST00000409783 KRTAP3-2Q9BYR7 98 aa9.87□□□□□ -0.83
PTCD3-203ENST00000409783 P0C880 135 aa9.86□□□□□ -0.83
PTCD3-203ENST00000409783 CYSTM1Q9H1C7 97 aa9.81□□□□□ -0.84
PTCD3-203ENST00000409783 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.8□□□□□ -0.84
PTCD3-203ENST00000409783 CHKB-CPT1BH3BT56 60 aa9.79□□□□□ -0.84
PTCD3-203ENST00000409783 SPTSSBQ8NFR3 76 aa9.79□□□□□ -0.84
PTCD3-203ENST00000409783 H7BZZ5 65 aa9.75□□□□□ -0.85
PTCD3-203ENST00000409783 ANAPC13Q9BS18 74 aa9.74□□□□□ -0.85
PTCD3-203ENST00000409783 R4GN34 69 aa9.68□□□□□ -0.86
PTCD3-203ENST00000409783 COA5Q86WW8 74 aa9.67□□□□□ -0.86
PTCD3-203ENST00000409783 M0QZ58 72 aa9.64□□□□□ -0.87
PTCD3-203ENST00000409783 KRTAP10-5P60370 271 aa9.63□□□□□ -0.87
PTCD3-203ENST00000409783 A6NN06 94 aa9.62□□□□□ -0.87
PTCD3-203ENST00000409783 CCDC179H3BU77 68 aa9.59□□□□□ -0.87
PTCD3-203ENST00000409783 KRTAP9-7A8MTY7 169 aa9.55□□□□□ -0.88
PTCD3-203ENST00000409783 MACF1Q9UPN3 7388 aaKnown RBP9.49□□□□□ -0.89
PTCD3-203ENST00000409783 LINC01554Q52M75 96 aa9.46□□□□□ -0.9
PTCD3-203ENST00000409783 PLAC4Q8WY50 150 aa9.46□□□□□ -0.9
PTCD3-203ENST00000409783 MT1XP80297 61 aa9.41□□□□□ -0.9
PTCD3-203ENST00000409783 KRTAP13-4Q3LI77 160 aa9.37□□□□□ -0.91
PTCD3-203ENST00000409783 ATP5EP56381 51 aaPredicted RBP9.32□□□□□ -0.92
PTCD3-203ENST00000409783 SYNE2Q8WXH0 6885 aaKnown RBP9.32□□□□□ -0.92
PTCD3-203ENST00000409783 PRO2289Q9P1D8 64 aa9.31□□□□□ -0.92
PTCD3-203ENST00000409783 SEC61GP60059 68 aa9.28□□□□□ -0.92
PTCD3-203ENST00000409783 SERP1Q9Y6X1 66 aa9.28□□□□□ -0.92
PTCD3-203ENST00000409783 KRTAP6-3Q3LI67 103 aa9.27□□□□□ -0.93
PTCD3-203ENST00000409783 TMEM258P61165 79 aa9.21□□□□□ -0.94
PTCD3-203ENST00000409783 A0A1B0GU33 70 aa9.16□□□□□ -0.94
PTCD3-203ENST00000409783 A0A1B0GU69 56 aa9.12□□□□□ -0.95
PTCD3-203ENST00000409783 SPATA8Q6RVD6 105 aa9.12□□□□□ -0.95
PTCD3-203ENST00000409783 KRTAP12-2P59991 146 aa9.1□□□□□ -0.95
PTCD3-203ENST00000409783 A0A0D9SG42 100 aa9.03□□□□□ -0.96
PTCD3-203ENST00000409783 KRTAP5-9P26371 169 aa9.02□□□□□ -0.97
PTCD3-203ENST00000409783 KMT2DO14686 5537 aa9.01□□□□□ -0.97
PTCD3-203ENST00000409783 LINC01558Q9Y6Z2 57 aa9□□□□□ -0.97
PTCD3-203ENST00000409783 KRTAP10-7P60409 375 aaPredicted RBP8.98□□□□□ -0.97
PTCD3-203ENST00000409783 KRTAP10-12P60413 245 aa8.94□□□□□ -0.98
PTCD3-203ENST00000409783 KRTAP12-1P59990 96 aa8.93□□□□□ -0.98
PTCD3-203ENST00000409783 CAMK2N1Q7Z7J9 78 aa8.93□□□□□ -0.98
PTCD3-203ENST00000409783 PRR15LQ9BU68 103 aa8.92□□□□□ -0.98
PTCD3-203ENST00000409783 MUC12Q9UKN1 5478 aa8.9□□□□□ -0.99
PTCD3-203ENST00000409783 KRTAP4-8A0A0G2JLE6 195 aa8.89□□□□□ -0.99
PTCD3-203ENST00000409783 KRTAP4-8Q9BYQ9 185 aa8.89□□□□□ -0.99
PTCD3-203ENST00000409783 SMIM26A0A096LP01 95 aa8.88□□□□□ -0.99
PTCD3-203ENST00000409783 SPINT4Q6UDR6 99 aa8.87□□□□□ -0.99
PTCD3-203ENST00000409783 A8MU10 97 aa8.86□□□□□ -0.99
PTCD3-203ENST00000409783 KRTAP8-1Q8IUC2 63 aa8.85□□□□□ -0.99
PTCD3-203ENST00000409783 SPRR2FQ96RM1 72 aa8.78□□□□□ -1
PTCD3-203ENST00000409783 NEBP20929 6669 aa8.75□□□□□ -1.01
PTCD3-203ENST00000409783 PCP4P48539 62 aa8.7□□□□□ -1.02
PTCD3-203ENST00000409783 MDN1Q9NU22 5596 aa8.69□□□□□ -1.02
PTCD3-203ENST00000409783 UQCR11O14957 56 aa8.67□□□□□ -1.02
PTCD3-203ENST00000409783 Q1T7F1 81 aa8.63□□□□□ -1.03
PTCD3-203ENST00000409783 V9GYY9 64 aa8.61□□□□□ -1.03
PTCD3-203ENST00000409783 SPRR2EP22531 72 aa8.57□□□□□ -1.04
PTCD3-203ENST00000409783 SPRR2BP35325 72 aa8.57□□□□□ -1.04
PTCD3-203ENST00000409783 SPRR2AP35326 72 aa8.57□□□□□ -1.04
PTCD3-203ENST00000409783 PSPHP1O15172 72 aa8.55□□□□□ -1.04
PTCD3-203ENST00000409783 LCE1AQ5T7P2 110 aa8.55□□□□□ -1.04
PTCD3-203ENST00000409783 C10orf95Q9H7T3 257 aa8.52□□□□□ -1.05
PTCD3-203ENST00000409783 MIR22HGQ0VDD5 57 aa8.51□□□□□ -1.05
PTCD3-203ENST00000409783 RPS28P62857 69 aaKnown RBP8.49□□□□□ -1.05
PTCD3-203ENST00000409783 KRTAP19-7Q3SYF9 63 aa8.42□□□□□ -1.06
PTCD3-203ENST00000409783 KRTAP20-1Q3LI63 56 aa8.39□□□□□ -1.07
PTCD3-203ENST00000409783 TNP1P09430 55 aa8.35□□□□□ -1.07
PTCD3-203ENST00000409783 MT1EP04732 61 aa8.31□□□□□ -1.08
PTCD3-203ENST00000409783 KRTAP2-3P0C7H8 128 aa8.28□□□□□ -1.08
PTCD3-203ENST00000409783 KRTAP2-4Q9BYR9 128 aa8.28□□□□□ -1.08
PTCD3-203ENST00000409783 SPRR2DP22532 72 aa8.27□□□□□ -1.09
PTCD3-203ENST00000409783 KRTAP19-5Q3LI72 72 aa8.26□□□□□ -1.09
PTCD3-203ENST00000409783 A6NED7 52 aa8.25□□□□□ -1.09
PTCD3-203ENST00000409783 LCE3AQ5TA76 89 aa8.25□□□□□ -1.09
PTCD3-203ENST00000409783 K7ERS5 55 aa8.21□□□□□ -1.1
PTCD3-203ENST00000409783 LCE5AQ5TCM9 118 aa8.15□□□□□ -1.1
PTCD3-203ENST00000409783 KRTAP19-3Q7Z4W3 81 aa8.15□□□□□ -1.1
PTCD3-203ENST00000409783 KRTAP25-1Q3LHN0 102 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms