RNA–Protein interactions for RNA: ENST00000409739.2

TRAF3IP1-203, Transcript of TRAF3 interacting protein 1, humanhuman

TSL 3

Gene TRAF3IP1, Length 1,070 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3IP1-203ENST00000409739 FAM236AA0A1B0GUQ0 79 aa14.34□□□□□ -0.11
TRAF3IP1-203ENST00000409739 FAM236BA0A1B0GV22 79 aa14.34□□□□□ -0.11
TRAF3IP1-203ENST00000409739 H3BPC8 53 aa14.32□□□□□ -0.12
TRAF3IP1-203ENST00000409739 A8MUN3 132 aa14.29□□□□□ -0.12
TRAF3IP1-203ENST00000409739 KRTAP19-1Q8IUB9 90 aa14.29□□□□□ -0.12
TRAF3IP1-203ENST00000409739 NDUFC1O43677 76 aa14.17□□□□□ -0.14
TRAF3IP1-203ENST00000409739 KRTAP9-1A8MXZ3 250 aaPredicted RBP14.13□□□□□ -0.15
TRAF3IP1-203ENST00000409739 KRTAP9-7A8MTY7 169 aa14.12□□□□□ -0.15
TRAF3IP1-203ENST00000409739 KRTAP19-6Q3LI70 58 aa14.11□□□□□ -0.15
TRAF3IP1-203ENST00000409739 SMIM20Q8N5G0 67 aa14.09□□□□□ -0.15
TRAF3IP1-203ENST00000409739 TRAV7A0A075B6U4 112 aa14.08□□□□□ -0.16
TRAF3IP1-203ENST00000409739 FCGBPQ9Y6R7 5405 aaPredicted RBP14.07□□□□□ -0.16
TRAF3IP1-203ENST00000409739 SPRR2GQ9BYE4 73 aa14.05□□□□□ -0.16
TRAF3IP1-203ENST00000409739 DMAC1Q96GE9 116 aa14.04□□□□□ -0.16
TRAF3IP1-203ENST00000409739 H0YAA0 97 aa13.99□□□□□ -0.17
TRAF3IP1-203ENST00000409739 KRTAP19-8Q3LI54 63 aa13.91□□□□□ -0.18
TRAF3IP1-203ENST00000409739 CRIPTQ9P021 101 aa13.9□□□□□ -0.18
TRAF3IP1-203ENST00000409739 MT1BP07438 61 aa13.89□□□□□ -0.19
TRAF3IP1-203ENST00000409739 Q5VV11 94 aa13.87□□□□□ -0.19
TRAF3IP1-203ENST00000409739 ADM2Q7Z4H4 148 aa13.85□□□□□ -0.19
TRAF3IP1-203ENST00000409739 SNURFQ9Y675 71 aa13.79□□□□□ -0.2
TRAF3IP1-203ENST00000409739 SERP2Q8N6R1 65 aa13.72□□□□□ -0.21
TRAF3IP1-203ENST00000409739 ACYP2P14621 99 aa13.71□□□□□ -0.21
TRAF3IP1-203ENST00000409739 C20orf197Q8N268 126 aa13.66□□□□□ -0.22
TRAF3IP1-203ENST00000409739 P0C880 135 aa13.6□□□□□ -0.23
TRAF3IP1-203ENST00000409739 MACF1Q9UPN3 7388 aaKnown RBP13.57□□□□□ -0.24
TRAF3IP1-203ENST00000409739 A6NN06 94 aa13.57□□□□□ -0.24
TRAF3IP1-203ENST00000409739 SYNE2Q8WXH0 6885 aaKnown RBP13.56□□□□□ -0.24
TRAF3IP1-203ENST00000409739 SPANXA2-OT1Q8N9U9 137 aa13.54□□□□□ -0.24
TRAF3IP1-203ENST00000409739 KRTAP3-2Q9BYR7 98 aa13.53□□□□□ -0.24
TRAF3IP1-203ENST00000409739 KRTAP10-5P60370 271 aa13.49□□□□□ -0.25
TRAF3IP1-203ENST00000409739 SPTSSBQ8NFR3 76 aa13.48□□□□□ -0.25
TRAF3IP1-203ENST00000409739 CHKB-CPT1BH3BT56 60 aa13.46□□□□□ -0.25
TRAF3IP1-203ENST00000409739 R4GN34 69 aa13.46□□□□□ -0.25
TRAF3IP1-203ENST00000409739 COX7CP15954 63 aa13.39□□□□□ -0.27
TRAF3IP1-203ENST00000409739 M0QZ58 72 aa13.38□□□□□ -0.27
TRAF3IP1-203ENST00000409739 PLAC4Q8WY50 150 aa13.21□□□□□ -0.29
TRAF3IP1-203ENST00000409739 CYSTM1Q9H1C7 97 aa13.18□□□□□ -0.3
TRAF3IP1-203ENST00000409739 KRTAP6-3Q3LI67 103 aa13.17□□□□□ -0.3
TRAF3IP1-203ENST00000409739 LINC01554Q52M75 96 aa13.16□□□□□ -0.3
TRAF3IP1-203ENST00000409739 COA5Q86WW8 74 aa13.16□□□□□ -0.3
TRAF3IP1-203ENST00000409739 H7BZZ5 65 aa13.14□□□□□ -0.31
TRAF3IP1-203ENST00000409739 MT1XP80297 61 aa13.11□□□□□ -0.31
TRAF3IP1-203ENST00000409739 PRO2289Q9P1D8 64 aa13.08□□□□□ -0.32
TRAF3IP1-203ENST00000409739 ANAPC13Q9BS18 74 aa13.07□□□□□ -0.32
TRAF3IP1-203ENST00000409739 KRTAP13-4Q3LI77 160 aa12.85□□□□□ -0.35
TRAF3IP1-203ENST00000409739 CCDC179H3BU77 68 aa12.83□□□□□ -0.36
TRAF3IP1-203ENST00000409739 SEC61GP60059 68 aa12.76□□□□□ -0.37
TRAF3IP1-203ENST00000409739 NEBP20929 6669 aa12.75□□□□□ -0.37
TRAF3IP1-203ENST00000409739 KRTAP5-9P26371 169 aa12.73□□□□□ -0.37
TRAF3IP1-203ENST00000409739 SERP1Q9Y6X1 66 aa12.73□□□□□ -0.37
TRAF3IP1-203ENST00000409739 KRTAP12-2P59991 146 aa12.71□□□□□ -0.37
TRAF3IP1-203ENST00000409739 KMT2DO14686 5537 aa12.61□□□□□ -0.39
TRAF3IP1-203ENST00000409739 ATP5EP56381 51 aaPredicted RBP12.56□□□□□ -0.4
TRAF3IP1-203ENST00000409739 MUC12Q9UKN1 5478 aa12.56□□□□□ -0.4
TRAF3IP1-203ENST00000409739 A0A1B0GU33 70 aa12.53□□□□□ -0.4
TRAF3IP1-203ENST00000409739 KRTAP10-7P60409 375 aaPredicted RBP12.51□□□□□ -0.41
TRAF3IP1-203ENST00000409739 SPATA8Q6RVD6 105 aa12.51□□□□□ -0.41
TRAF3IP1-203ENST00000409739 KRTAP8-1Q8IUC2 63 aa12.48□□□□□ -0.41
TRAF3IP1-203ENST00000409739 A0A0D9SG42 100 aa12.46□□□□□ -0.41
TRAF3IP1-203ENST00000409739 A0A1B0GU69 56 aa12.45□□□□□ -0.42
TRAF3IP1-203ENST00000409739 KRTAP10-12P60413 245 aa12.44□□□□□ -0.42
TRAF3IP1-203ENST00000409739 SPRR2FQ96RM1 72 aa12.43□□□□□ -0.42
TRAF3IP1-203ENST00000409739 KRTAP4-8A0A0G2JLE6 195 aa12.42□□□□□ -0.42
TRAF3IP1-203ENST00000409739 CAMK2N1Q7Z7J9 78 aa12.42□□□□□ -0.42
TRAF3IP1-203ENST00000409739 KRTAP4-8Q9BYQ9 185 aa12.42□□□□□ -0.42
TRAF3IP1-203ENST00000409739 TMEM258P61165 79 aa12.35□□□□□ -0.43
TRAF3IP1-203ENST00000409739 KRTAP20-1Q3LI63 56 aa12.35□□□□□ -0.43
TRAF3IP1-203ENST00000409739 MDN1Q9NU22 5596 aa12.25□□□□□ -0.45
TRAF3IP1-203ENST00000409739 KRTAP12-1P59990 96 aa12.24□□□□□ -0.45
TRAF3IP1-203ENST00000409739 SPINT4Q6UDR6 99 aa12.24□□□□□ -0.45
TRAF3IP1-203ENST00000409739 SMIM26A0A096LP01 95 aa12.17□□□□□ -0.46
TRAF3IP1-203ENST00000409739 SPRR2EP22531 72 aa12.17□□□□□ -0.46
TRAF3IP1-203ENST00000409739 SPRR2BP35325 72 aa12.17□□□□□ -0.46
TRAF3IP1-203ENST00000409739 SPRR2AP35326 72 aa12.17□□□□□ -0.46
TRAF3IP1-203ENST00000409739 PRR15LQ9BU68 103 aa12.16□□□□□ -0.46
TRAF3IP1-203ENST00000409739 LINC01558Q9Y6Z2 57 aa12.15□□□□□ -0.46
TRAF3IP1-203ENST00000409739 A8MU10 97 aa12.11□□□□□ -0.47
TRAF3IP1-203ENST00000409739 LCE1AQ5T7P2 110 aa12.06□□□□□ -0.48
TRAF3IP1-203ENST00000409739 KRTAP2-3P0C7H8 128 aa11.91□□□□□ -0.5
TRAF3IP1-203ENST00000409739 KRTAP2-4Q9BYR9 128 aa11.91□□□□□ -0.5
TRAF3IP1-203ENST00000409739 UQCR11O14957 56 aa11.77□□□□□ -0.53
TRAF3IP1-203ENST00000409739 SPRR2DP22532 72 aa11.75□□□□□ -0.53
TRAF3IP1-203ENST00000409739 KRTAP19-7Q3SYF9 63 aa11.7□□□□□ -0.54
TRAF3IP1-203ENST00000409739 C10orf95Q9H7T3 257 aa11.67□□□□□ -0.54
TRAF3IP1-203ENST00000409739 MT1EP04732 61 aa11.59□□□□□ -0.55
TRAF3IP1-203ENST00000409739 V9GYY9 64 aa11.59□□□□□ -0.55
TRAF3IP1-203ENST00000409739 Q1T7F1 81 aa11.55□□□□□ -0.56
TRAF3IP1-203ENST00000409739 TNP1P09430 55 aa11.54□□□□□ -0.56
TRAF3IP1-203ENST00000409739 MIR22HGQ0VDD5 57 aa11.54□□□□□ -0.56
TRAF3IP1-203ENST00000409739 PSPHP1O15172 72 aa11.52□□□□□ -0.57
TRAF3IP1-203ENST00000409739 KRTAP2-2Q9BYT5 123 aa11.5□□□□□ -0.57
TRAF3IP1-203ENST00000409739 KRTAP2-1Q9BYU5 128 aa11.5□□□□□ -0.57
TRAF3IP1-203ENST00000409739 KRTAP19-5Q3LI72 72 aa11.49□□□□□ -0.57
TRAF3IP1-203ENST00000409739 KRTAP19-3Q7Z4W3 81 aa11.42□□□□□ -0.58
TRAF3IP1-203ENST00000409739 LCE3AQ5TA76 89 aa11.41□□□□□ -0.58
TRAF3IP1-203ENST00000409739 LCE3BQ5TA77 95 aa11.41□□□□□ -0.58
TRAF3IP1-203ENST00000409739 LCE5AQ5TCM9 118 aa11.4□□□□□ -0.58
TRAF3IP1-203ENST00000409739 PCP4P48539 62 aa11.38□□□□□ -0.59
TRAF3IP1-203ENST00000409739 K7ERS5 55 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms