RNA–Protein interactions for RNA: ENST00000409739.2

TRAF3IP1-203, Transcript of TRAF3 interacting protein 1, humanhuman

TSL 3

Gene TRAF3IP1, Length 1,070 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3IP1-203ENST00000409739 NISCHQ9Y2I1 1504 aa76■■■■■ 9.76
TRAF3IP1-203ENST00000409739 CCDC180Q9P1Z9 1646 aa67.71■■■■■ 8.43
TRAF3IP1-203ENST00000409739 ABCC9O60706 1549 aa66.1■■■■■ 8.17
TRAF3IP1-203ENST00000409739 RB1CC1Q8TDY2 1594 aa63.64■■■■■ 7.78
TRAF3IP1-203ENST00000409739 NACADO15069 1562 aa63.55■■■■■ 7.76
TRAF3IP1-203ENST00000409739 ZCCHC6Q5VYS8 1495 aaKnown RBP63.35■■■■■ 7.73
TRAF3IP1-203ENST00000409739 DCAF8L2P0C7V8 631 aa63.3■■■■■ 7.72
TRAF3IP1-203ENST00000409739 MYO15BQ96JP2 1530 aa63.15■■■■■ 7.7
TRAF3IP1-203ENST00000409739 DCAF1Q9Y4B6 1507 aa62.9■■■■■ 7.66
TRAF3IP1-203ENST00000409739 UNC13AQ9UPW8 1703 aa62.42■■■■■ 7.58
TRAF3IP1-203ENST00000409739 BICRAQ9NZM4 1560 aa61.77■■■■■ 7.48
TRAF3IP1-203ENST00000409739 SCRIBQ14160 1630 aa61.73■■■■■ 7.47
TRAF3IP1-203ENST00000409739 PABPN1Q86U42 306 aaKnown RBP eCLIP61.67■■■■■ 7.46
TRAF3IP1-203ENST00000409739 SHROOM4Q9ULL8 1493 aa61.04■■■■■ 7.36
TRAF3IP1-203ENST00000409739 DNAJC5BQ9UF47 199 aa60.59■■■■■ 7.29
TRAF3IP1-203ENST00000409739 EIF4G1Q04637 1599 aaKnown RBP60.1■■■■■ 7.21
TRAF3IP1-203ENST00000409739 CC2D2AQ9P2K1 1620 aa59.87■■■■■ 7.18
TRAF3IP1-203ENST00000409739 CECR2Q9BXF3 1484 aa59.38■■■■■ 7.1
TRAF3IP1-203ENST00000409739 SMARCA4P51532 1647 aa59.05■■■■■ 7.04
TRAF3IP1-203ENST00000409739 BAZ1AQ9NRL2 1556 aaPredicted RBP58.92■■■■■ 7.02
TRAF3IP1-203ENST00000409739 ATAD2BQ9ULI0 1458 aa58.63■■■■■ 6.98
TRAF3IP1-203ENST00000409739 SMARCA2P51531 1590 aa58.6■■■■■ 6.97
TRAF3IP1-203ENST00000409739 MROH2BQ7Z745 1585 aa58.59■■■■■ 6.97
TRAF3IP1-203ENST00000409739 NCAPD3P42695 1498 aa58.57■■■■■ 6.97
TRAF3IP1-203ENST00000409739 PEG3Q9GZU2 1588 aa58.46■■■■■ 6.95
TRAF3IP1-203ENST00000409739 HMGXB3Q12766 1538 aa58.38■■■■■ 6.94
TRAF3IP1-203ENST00000409739 BAZ1BQ9UIG0 1483 aaKnown RBP58.17■■■■■ 6.9
TRAF3IP1-203ENST00000409739 WIZO95785 1651 aa58.03■■■■■ 6.88
TRAF3IP1-203ENST00000409739 RSF1Q96T23 1441 aaPredicted RBP57.85■■■■■ 6.85
TRAF3IP1-203ENST00000409739 TOP2AP11388 1531 aaKnown RBP57.37■■■■■ 6.77
TRAF3IP1-203ENST00000409739 NESP48681 1621 aa57.23■■■■■ 6.75
TRAF3IP1-203ENST00000409739 LAMC3Q9Y6N6 1575 aa57.12■■■■■ 6.73
TRAF3IP1-203ENST00000409739 ERCC6Q03468 1493 aa56.95■■■■■ 6.71
TRAF3IP1-203ENST00000409739 CADPSQ9ULU8 1353 aa56.83■■■■■ 6.69
TRAF3IP1-203ENST00000409739 KIF21AQ7Z4S6 1674 aa56.7■■■■■ 6.67
TRAF3IP1-203ENST00000409739 CCDC88BA6NC98 1476 aa56.63■■■■■ 6.66
TRAF3IP1-203ENST00000409739 PDS5BQ9NTI5 1447 aa56.62■■■■■ 6.65
TRAF3IP1-203ENST00000409739 CFTRP13569 1480 aa56.55■■■■■ 6.64
TRAF3IP1-203ENST00000409739 THOC2Q8NI27 1593 aaKnown RBP56.47■■■■■ 6.63
TRAF3IP1-203ENST00000409739 PRDM2Q13029 1718 aa56.4■■■■■ 6.62
TRAF3IP1-203ENST00000409739 CUX2O14529 1486 aa56.39■■■■■ 6.62
TRAF3IP1-203ENST00000409739 SUPT5HO00267 1087 aaKnown RBP56.28■■■■■ 6.6
TRAF3IP1-203ENST00000409739 FANCD2Q9BXW9 1451 aa56.25■■■■■ 6.59
TRAF3IP1-203ENST00000409739 CEP164Q9UPV0 1460 aa56.2■■■■■ 6.59
TRAF3IP1-203ENST00000409739 MRC2Q9UBG0 1479 aa56.11■■■■■ 6.57
TRAF3IP1-203ENST00000409739 WDR62O43379 1518 aa55.98■■■■■ 6.55
TRAF3IP1-203ENST00000409739 URB2Q14146 1524 aaKnown RBP55.72■■■■■ 6.51
TRAF3IP1-203ENST00000409739 TOPBP1Q92547 1522 aa55.38■■■■■ 6.46
TRAF3IP1-203ENST00000409739 DNMBPQ6XZF7 1577 aa55.35■■■■■ 6.45
TRAF3IP1-203ENST00000409739 ABCC8Q09428 1581 aa55.31■■■■■ 6.44
TRAF3IP1-203ENST00000409739 CUX1P39880 1505 aa54.99■■■■■ 6.39
TRAF3IP1-203ENST00000409739 IFT140Q96RY7 1462 aa54.98■■■■■ 6.39
TRAF3IP1-203ENST00000409739 POLA1P09884 1462 aaPredicted RBP54.9■■■■■ 6.38
TRAF3IP1-203ENST00000409739 TARBP1Q13395 1621 aaKnown RBP54.84■■■■■ 6.37
TRAF3IP1-203ENST00000409739 ZNF608Q9ULD9 1512 aaPredicted RBP54.77■■■■■ 6.36
TRAF3IP1-203ENST00000409739 FGD5Q6ZNL6 1462 aa54.77■■■■■ 6.36
TRAF3IP1-203ENST00000409739 EIF4G3O43432 1585 aaKnown RBP54.65■■■■■ 6.34
TRAF3IP1-203ENST00000409739 RAD54L2Q9Y4B4 1467 aa54.64■■■■■ 6.34
TRAF3IP1-203ENST00000409739 SOGA1O94964 1423 aa54.59■■■■■ 6.33
TRAF3IP1-203ENST00000409739 BIVM-ERCC5R4GMW8 1640 aa54.58■■■■■ 6.33
TRAF3IP1-203ENST00000409739 WRNQ14191 1432 aaPredicted RBP eCLIP54.55■■■■■ 6.32
TRAF3IP1-203ENST00000409739 TOP2BQ02880 1626 aa54.53■■■■■ 6.32
TRAF3IP1-203ENST00000409739 DNAJC5Q9H3Z4 198 aa54.53■■■■■ 6.32
TRAF3IP1-203ENST00000409739 SYNJ1O43426 1573 aa54.53■■■■■ 6.32
TRAF3IP1-203ENST00000409739 WDR97A6NE52 1622 aa54.48■■■■■ 6.31
TRAF3IP1-203ENST00000409739 AQRO60306 1485 aaKnown RBP eCLIP54.41■■■■■ 6.33e-8■■■■□ 21.5
TRAF3IP1-203ENST00000409739 TDRD9Q8NDG6 1382 aaKnown RBP54.27■■■■■ 6.28
TRAF3IP1-203ENST00000409739 ABCA10Q8WWZ4 1543 aa54.24■■■■■ 6.27
TRAF3IP1-203ENST00000409739 ABCA5Q8WWZ7 1642 aa54.11■■■■■ 6.25
TRAF3IP1-203ENST00000409739 PBRM1Q86U86 1689 aa54.1■■■■■ 6.25
TRAF3IP1-203ENST00000409739 CHD1O14646 1710 aa54.04■■■■■ 6.24
TRAF3IP1-203ENST00000409739 GAPVD1Q14C86 1478 aa54.02■■■■■ 6.24
TRAF3IP1-203ENST00000409739 GRIN2BQ13224 1484 aa54■■■■■ 6.23
TRAF3IP1-203ENST00000409739 SNAPC4Q5SXM2 1469 aa53.96■■■■■ 6.23
TRAF3IP1-203ENST00000409739 OSCARQ8IYS5 282 aa53.9■■■■■ 6.22
TRAF3IP1-203ENST00000409739 MAGI1Q96QZ7 1491 aaPredicted RBP53.88■■■■■ 6.22
TRAF3IP1-203ENST00000409739 SYNJ2O15056 1496 aa53.66■■■■■ 6.18
TRAF3IP1-203ENST00000409739 FBLN2P98095 1184 aa53.66■■■■■ 6.18
TRAF3IP1-203ENST00000409739 ERICH3Q5RHP9 1530 aa53.6■■■■■ 6.17
TRAF3IP1-203ENST00000409739 ADAMTS12P58397 1594 aa53.59■■■■■ 6.17
TRAF3IP1-203ENST00000409739 CHMP7Q8WUX9 453 aaPredicted RBP53.51■■■■■ 6.16
TRAF3IP1-203ENST00000409739 KIF27Q86VH2 1401 aa53.39■■■■■ 6.14
TRAF3IP1-203ENST00000409739 FHAD1B1AJZ9 1412 aa53.36■■■■■ 6.13
TRAF3IP1-203ENST00000409739 CLASP1Q7Z460 1538 aa53.35■■■■■ 6.13
TRAF3IP1-203ENST00000409739 GRIN2AQ12879 1464 aa53.34■■■■■ 6.13
TRAF3IP1-203ENST00000409739 RIMBP3CA6NJZ7 1639 aa53.27■■■■■ 6.12
TRAF3IP1-203ENST00000409739 RIMBP3BA6NNM3 1639 aa53.27■■■■■ 6.12
TRAF3IP1-203ENST00000409739 RIMBP3Q9UFD9 1639 aa53.27■■■■■ 6.12
TRAF3IP1-203ENST00000409739 ARHGEF11O15085 1522 aa53.2■■■■■ 6.11
TRAF3IP1-203ENST00000409739 CUL7Q14999 1698 aa53.18■■■■■ 6.1
TRAF3IP1-203ENST00000409739 IGF1RP08069 1367 aa53.14■■■■■ 6.1
TRAF3IP1-203ENST00000409739 TRIM41Q8WV44 630 aa53.14■■■■■ 6.1
TRAF3IP1-203ENST00000409739 CEP170Q5SW79 1584 aa53.14■■■■■ 6.1
TRAF3IP1-203ENST00000409739 NUP160Q12769 1436 aa53.09■■■■■ 6.09
TRAF3IP1-203ENST00000409739 RUSC2Q8N2Y8 1516 aa52.96■■■■■ 6.07
TRAF3IP1-203ENST00000409739 CARMIL1Q5VZK9 1371 aa52.84■■■■■ 6.05
TRAF3IP1-203ENST00000409739 SHROOM2Q13796 1616 aa52.8■■■■■ 6.04
TRAF3IP1-203ENST00000409739 ARAP1Q96P48 1450 aa52.78■■■■■ 6.04
TRAF3IP1-203ENST00000409739 ERCC6L2Q5T890 1561 aa52.61■■■■■ 6.01
TRAF3IP1-203ENST00000409739 RAPGEF2Q9Y4G8 1499 aa52.56■■■■■ 6.01
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms