RNA–Protein interactions for RNA: ENST00000407637.5

HERC3-203, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 3, humanhuman

TSL 1 (best) BASIC

Gene HERC3, Length 2,634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC3-203ENST00000407637 S4R3F8 94 aa6.63□□□□□ -1.35
HERC3-203ENST00000407637 KRTAP12-2P59991 146 aa6.6□□□□□ -1.35
HERC3-203ENST00000407637 KRTAP10-1P60331 282 aa6.57□□□□□ -1.36
HERC3-203ENST00000407637 LUZP6Q538Z0 58 aa6.57□□□□□ -1.36
HERC3-203ENST00000407637 PKD1P98161 4303 aa6.56□□□□□ -1.36
HERC3-203ENST00000407637 RPS29P62273 56 aaKnown RBP6.52□□□□□ -1.37
HERC3-203ENST00000407637 XP32Q5T750 250 aa6.5□□□□□ -1.37
HERC3-203ENST00000407637 SACSQ9NZJ4 4579 aa6.5□□□□□ -1.37
HERC3-203ENST00000407637 KRTAP12-1P59990 96 aa6.47□□□□□ -1.37
HERC3-203ENST00000407637 PKHD1P08F94 4074 aa6.47□□□□□ -1.37
HERC3-203ENST00000407637 PKHD1L1Q86WI1 4243 aa6.46□□□□□ -1.37
HERC3-203ENST00000407637 HYDINQ4G0P3 5121 aa6.36□□□□□ -1.39
HERC3-203ENST00000407637 KRTAP10-8P60410 259 aa6.34□□□□□ -1.39
HERC3-203ENST00000407637 PLAC4Q8WY50 150 aa6.34□□□□□ -1.39
HERC3-203ENST00000407637 APOBP04114 4563 aaKnown RBP6.32□□□□□ -1.4
HERC3-203ENST00000407637 LCE2BO14633 110 aa6.32□□□□□ -1.4
HERC3-203ENST00000407637 HSPG2P98160 4391 aa6.32□□□□□ -1.4
HERC3-203ENST00000407637 FAT1Q14517 4588 aa6.29□□□□□ -1.4
HERC3-203ENST00000407637 LRP1Q07954 4544 aaKnown RBP6.29□□□□□ -1.4
HERC3-203ENST00000407637 DYNC1H1Q14204 4646 aaKnown RBP6.28□□□□□ -1.4
HERC3-203ENST00000407637 LCE2CQ5TA81 110 aa6.26□□□□□ -1.41
HERC3-203ENST00000407637 SMR3BP02814 79 aaPredicted RBP6.25□□□□□ -1.41
HERC3-203ENST00000407637 FAT3Q8TDW7 4589 aa6.23□□□□□ -1.41
HERC3-203ENST00000407637 MYCBP2O75592 4640 aa6.21□□□□□ -1.41
HERC3-203ENST00000407637 M0QZ58 72 aa6.21□□□□□ -1.42
HERC3-203ENST00000407637 LCE2AQ5TA79 106 aaPredicted RBP6.2□□□□□ -1.42
HERC3-203ENST00000407637 KMT2CQ8NEZ4 4911 aaKnown RBP6.19□□□□□ -1.42
HERC3-203ENST00000407637 TNXBP22105 4242 aa6.18□□□□□ -1.42
HERC3-203ENST00000407637 KRTAP10-4P60372 401 aaPredicted RBP6.08□□□□□ -1.44
HERC3-203ENST00000407637 LPAP08519 4548 aa6.07□□□□□ -1.44
HERC3-203ENST00000407637 RYR3Q15413 4870 aa6.04□□□□□ -1.44
HERC3-203ENST00000407637 RYR2Q92736 4967 aa6.03□□□□□ -1.44
HERC3-203ENST00000407637 R4GN34 69 aa6□□□□□ -1.45
HERC3-203ENST00000407637 SEC61BP60468 96 aaKnown RBP5.99□□□□□ -1.45
HERC3-203ENST00000407637 LORP23490 312 aaPredicted RBP5.96□□□□□ -1.45
HERC3-203ENST00000407637 PP632Q6XCG6 107 aa5.92□□□□□ -1.46
HERC3-203ENST00000407637 LRP2P98164 4655 aa5.86□□□□□ -1.47
HERC3-203ENST00000407637 EPPK1P58107 5090 aaKnown RBP5.85□□□□□ -1.47
HERC3-203ENST00000407637 KIAA1109Q2LD37 5005 aa5.79□□□□□ -1.48
HERC3-203ENST00000407637 CAMK2N1Q7Z7J9 78 aa5.78□□□□□ -1.48
HERC3-203ENST00000407637 SPRR5A0A1B0GTR4 108 aa5.77□□□□□ -1.49
HERC3-203ENST00000407637 A0A1B0GVY2 172 aa5.77□□□□□ -1.49
HERC3-203ENST00000407637 PRO2289Q9P1D8 64 aa5.72□□□□□ -1.49
HERC3-203ENST00000407637 KRTAP17-1Q9BYP8 105 aa5.7□□□□□ -1.5
HERC3-203ENST00000407637 KRTAP23-1A1A580 65 aa5.67□□□□□ -1.5
HERC3-203ENST00000407637 RYR1P21817 5038 aa5.65□□□□□ -1.51
HERC3-203ENST00000407637 Q5VSD8 79 aa5.61□□□□□ -1.51
HERC3-203ENST00000407637 TNP1P09430 55 aa5.6□□□□□ -1.51
HERC3-203ENST00000407637 MUC17Q685J3 4493 aa5.57□□□□□ -1.52
HERC3-203ENST00000407637 MT1HL1P0DM35 61 aa5.54□□□□□ -1.52
HERC3-203ENST00000407637 KRTAP4-5Q9BYR2 181 aa5.52□□□□□ -1.53
HERC3-203ENST00000407637 ABCA13Q86UQ4 5058 aa5.51□□□□□ -1.53
HERC3-203ENST00000407637 INE1O15225 51 aa5.5□□□□□ -1.53
HERC3-203ENST00000407637 BIRC6Q9NR09 4857 aa5.44□□□□□ -1.54
HERC3-203ENST00000407637 HERC2O95714 4834 aa5.42□□□□□ -1.54
HERC3-203ENST00000407637 PCLOQ9Y6V0 5065 aa5.39□□□□□ -1.55
HERC3-203ENST00000407637 KRTAP4-1Q9BYQ7 146 aa5.39□□□□□ -1.55
HERC3-203ENST00000407637 FLGP20930 4061 aaPredicted RBP5.33□□□□□ -1.56
HERC3-203ENST00000407637 KRTAP19-2Q3LHN2 52 aa5.31□□□□□ -1.56
HERC3-203ENST00000407637 LCE3AQ5TA76 89 aa5.29□□□□□ -1.56
HERC3-203ENST00000407637 HERC1Q15751 4861 aa5.29□□□□□ -1.56
HERC3-203ENST00000407637 MUC2Q02817 5179 aa5.18□□□□□ -1.58
HERC3-203ENST00000407637 KRTAP8-1Q8IUC2 63 aa5.08□□□□□ -1.6
HERC3-203ENST00000407637 HMCN2Q8NDA2 5059 aa5.04□□□□□ -1.6
HERC3-203ENST00000407637 UBR4Q5T4S7 5183 aa5.02□□□□□ -1.61
HERC3-203ENST00000407637 SPRR2GQ9BYE4 73 aa5.02□□□□□ -1.61
HERC3-203ENST00000407637 RNF213Q63HN8 5207 aa5.02□□□□□ -1.61
HERC3-203ENST00000407637 KRTAP10-12P60413 245 aa5.01□□□□□ -1.61
HERC3-203ENST00000407637 KRTAP19-1Q8IUB9 90 aa5.01□□□□□ -1.61
HERC3-203ENST00000407637 KRTAP12-3P60328 96 aa4.97□□□□□ -1.61
HERC3-203ENST00000407637 FAT4Q6V0I7 4981 aa4.93□□□□□ -1.62
HERC3-203ENST00000407637 KRTAP10-10P60014 251 aa4.93□□□□□ -1.62
HERC3-203ENST00000407637 KRTAP10-5P60370 271 aa4.83□□□□□ -1.64
HERC3-203ENST00000407637 MT1XP80297 61 aa4.78□□□□□ -1.64
HERC3-203ENST00000407637 KRTAP19-4Q3LI73 84 aa4.75□□□□□ -1.65
HERC3-203ENST00000407637 KRTAP10-7P60409 375 aaPredicted RBP4.74□□□□□ -1.65
HERC3-203ENST00000407637 M0R2T5 61 aa4.73□□□□□ -1.65
HERC3-203ENST00000407637 MT1FP04733 61 aa4.73□□□□□ -1.65
HERC3-203ENST00000407637 LCE3CQ5T5A8 94 aa4.71□□□□□ -1.66
HERC3-203ENST00000407637 KRTAP19-8Q3LI54 63 aa4.69□□□□□ -1.66
HERC3-203ENST00000407637 MT2AP02795 61 aa4.68□□□□□ -1.66
HERC3-203ENST00000407637 MT1BP07438 61 aa4.67□□□□□ -1.66
HERC3-203ENST00000407637 KRTAP9-6A8MVA2 160 aa4.65□□□□□ -1.66
HERC3-203ENST00000407637 KRTAP19-5Q3LI72 72 aa4.61□□□□□ -1.67
HERC3-203ENST00000407637 KRTAP2-3P0C7H8 128 aa4.61□□□□□ -1.67
HERC3-203ENST00000407637 KRTAP2-4Q9BYR9 128 aa4.61□□□□□ -1.67
HERC3-203ENST00000407637 KRTAP2-1Q9BYU5 128 aa4.61□□□□□ -1.67
HERC3-203ENST00000407637 MT1HP80294 61 aa4.59□□□□□ -1.67
HERC3-203ENST00000407637 KRTAP9-8Q9BYQ0 159 aa4.57□□□□□ -1.68
HERC3-203ENST00000407637 KMT2DO14686 5537 aa4.52□□□□□ -1.69
HERC3-203ENST00000407637 KRTAP4-7Q9BYR0 210 aa4.43□□□□□ -1.7
HERC3-203ENST00000407637 KRTAP9-4Q9BYQ2 154 aa4.36□□□□□ -1.71
HERC3-203ENST00000407637 KRTAP4-8A0A0G2JLE6 195 aa4.34□□□□□ -1.72
HERC3-203ENST00000407637 KRTAP4-8Q9BYQ9 185 aa4.34□□□□□ -1.72
HERC3-203ENST00000407637 KRTAP9-3Q9BYQ3 159 aa4.33□□□□□ -1.72
HERC3-203ENST00000407637 USH2AO75445 5202 aa4.32□□□□□ -1.72
HERC3-203ENST00000407637 FSIP2Q5CZC0 6907 aa4.32□□□□□ -1.72
HERC3-203ENST00000407637 KRTAP9-6A0A140TA67 174 aa4.32□□□□□ -1.72
HERC3-203ENST00000407637 KRTAP9-7A8MTY7 169 aa4.32□□□□□ -1.72
HERC3-203ENST00000407637 LCE4AQ5TA78 99 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms