RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ACYP2P14621 99 aa8.86□□□□□ -0.99
SDC1-203ENST00000403076 FLGP20930 4061 aaPredicted RBP8.81□□□□□ -1
SDC1-203ENST00000403076 LCA10Q71F78 164 aa8.8□□□□□ -1
SDC1-203ENST00000403076 ATP5EP56381 51 aaPredicted RBP8.79□□□□□ -1
SDC1-203ENST00000403076 LCE2AQ5TA79 106 aaPredicted RBP8.78□□□□□ -1
SDC1-203ENST00000403076 CHKB-CPT1BH3BT56 60 aa8.75□□□□□ -1.01
SDC1-203ENST00000403076 SERP1Q9Y6X1 66 aa8.74□□□□□ -1.01
SDC1-203ENST00000403076 CSAG1Q6PB30 78 aa8.73□□□□□ -1.01
SDC1-203ENST00000403076 KRTAP3-3Q9BYR6 98 aa8.7□□□□□ -1.02
SDC1-203ENST00000403076 COA5Q86WW8 74 aa8.69□□□□□ -1.02
SDC1-203ENST00000403076 SPTSSBQ8NFR3 76 aa8.64□□□□□ -1.03
SDC1-203ENST00000403076 KRTAP10-6P60371 365 aaPredicted RBP8.63□□□□□ -1.03
SDC1-203ENST00000403076 SMIM26A0A096LP01 95 aa8.59□□□□□ -1.03
SDC1-203ENST00000403076 LORP23490 312 aaPredicted RBP8.57□□□□□ -1.04
SDC1-203ENST00000403076 KRTAP9-2Q9BYQ4 174 aa8.56□□□□□ -1.04
SDC1-203ENST00000403076 KRTAP9-8Q9BYQ0 159 aa8.49□□□□□ -1.05
SDC1-203ENST00000403076 MT2AP02795 61 aa8.46□□□□□ -1.05
SDC1-203ENST00000403076 H0YAA0 97 aa8.44□□□□□ -1.06
SDC1-203ENST00000403076 KRTAP10-10P60014 251 aa8.44□□□□□ -1.06
SDC1-203ENST00000403076 ADM2Q7Z4H4 148 aa8.43□□□□□ -1.06
SDC1-203ENST00000403076 MT1FP04733 61 aa8.39□□□□□ -1.07
SDC1-203ENST00000403076 SEC61GP60059 68 aa8.34□□□□□ -1.08
SDC1-203ENST00000403076 KRTAP9-6A0A140TA67 174 aa8.33□□□□□ -1.08
SDC1-203ENST00000403076 Q1T7F1 81 aa8.31□□□□□ -1.08
SDC1-203ENST00000403076 KRTAP3-2Q9BYR7 98 aa8.31□□□□□ -1.08
SDC1-203ENST00000403076 PRO0628Q9UI54 55 aa8.31□□□□□ -1.08
SDC1-203ENST00000403076 P0C880 135 aa8.3□□□□□ -1.08
SDC1-203ENST00000403076 V9GYY9 64 aa8.26□□□□□ -1.09
SDC1-203ENST00000403076 A0A1B0GU69 56 aa8.24□□□□□ -1.09
SDC1-203ENST00000403076 LINC01558Q9Y6Z2 57 aa8.24□□□□□ -1.09
SDC1-203ENST00000403076 CRIPTQ9P021 101 aa8.23□□□□□ -1.09
SDC1-203ENST00000403076 KRTAP9-3Q9BYQ3 159 aa8.21□□□□□ -1.1
SDC1-203ENST00000403076 PRR15LQ9BU68 103 aa8.19□□□□□ -1.1
SDC1-203ENST00000403076 R4GN34 69 aa8.18□□□□□ -1.1
SDC1-203ENST00000403076 LCE2DQ5TA82 110 aaPredicted RBP8.16□□□□□ -1.1
SDC1-203ENST00000403076 FSIP2Q5CZC0 6907 aa8.15□□□□□ -1.1
SDC1-203ENST00000403076 M0QZ58 72 aa8.14□□□□□ -1.11
SDC1-203ENST00000403076 BRK1Q8WUW1 75 aa8.11□□□□□ -1.11
SDC1-203ENST00000403076 A0A1B0GU33 70 aa8.1□□□□□ -1.11
SDC1-203ENST00000403076 KRTAP19-1Q8IUB9 90 aa8.1□□□□□ -1.11
SDC1-203ENST00000403076 SPRR2GQ9BYE4 73 aa8.1□□□□□ -1.11
SDC1-203ENST00000403076 LCE2BO14633 110 aa8.04□□□□□ -1.12
SDC1-203ENST00000403076 PSPHP1O15172 72 aa8.04□□□□□ -1.12
SDC1-203ENST00000403076 CRCT1Q9UGL9 99 aa8.04□□□□□ -1.12
SDC1-203ENST00000403076 LINC01554Q52M75 96 aa8.03□□□□□ -1.12
SDC1-203ENST00000403076 Q5VV11 94 aa8□□□□□ -1.13
SDC1-203ENST00000403076 KRTAP13-4Q3LI77 160 aa7.99□□□□□ -1.13
SDC1-203ENST00000403076 SPATA8Q6RVD6 105 aa7.98□□□□□ -1.13
SDC1-203ENST00000403076 KRTAP19-8Q3LI54 63 aa7.94□□□□□ -1.14
SDC1-203ENST00000403076 UQCR11O14957 56 aa7.92□□□□□ -1.14
SDC1-203ENST00000403076 A0A0D9SG42 100 aa7.89□□□□□ -1.15
SDC1-203ENST00000403076 MT1BP07438 61 aa7.87□□□□□ -1.15
SDC1-203ENST00000403076 PLAC4Q8WY50 150 aa7.84□□□□□ -1.15
SDC1-203ENST00000403076 USH2AO75445 5202 aa7.82□□□□□ -1.16
SDC1-203ENST00000403076 A6NED7 52 aa7.81□□□□□ -1.16
SDC1-203ENST00000403076 A8MU10 97 aa7.81□□□□□ -1.16
SDC1-203ENST00000403076 MIR22HGQ0VDD5 57 aa7.81□□□□□ -1.16
SDC1-203ENST00000403076 A6NN06 94 aa7.8□□□□□ -1.16
SDC1-203ENST00000403076 CDC42SE1Q9NRR8 79 aa7.8□□□□□ -1.16
SDC1-203ENST00000403076 PMAIP1Q13794 54 aa7.76□□□□□ -1.17
SDC1-203ENST00000403076 SPINT4Q6UDR6 99 aa7.74□□□□□ -1.17
SDC1-203ENST00000403076 KRTAP12-1P59990 96 aa7.68□□□□□ -1.18
SDC1-203ENST00000403076 KRTAP12-2P59991 146 aa7.64□□□□□ -1.19
SDC1-203ENST00000403076 KRTAP19-6Q3LI70 58 aa7.64□□□□□ -1.19
SDC1-203ENST00000403076 SSPOA2VEC9 5147 aa7.64□□□□□ -1.19
SDC1-203ENST00000403076 CAMK2N1Q7Z7J9 78 aa7.63□□□□□ -1.19
SDC1-203ENST00000403076 KTN1-AS1Q86SY8 53 aa7.61□□□□□ -1.19
SDC1-203ENST00000403076 K7ERS5 55 aa7.57□□□□□ -1.2
SDC1-203ENST00000403076 PRO2289Q9P1D8 64 aa7.57□□□□□ -1.2
SDC1-203ENST00000403076 KRTAP10-5P60370 271 aa7.56□□□□□ -1.2
SDC1-203ENST00000403076 MT1XP80297 61 aa7.52□□□□□ -1.2
SDC1-203ENST00000403076 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.51□□□□□ -1.21
SDC1-203ENST00000403076 KRTAP9-7A8MTY7 169 aa7.47□□□□□ -1.21
SDC1-203ENST00000403076 FCGBPQ9Y6R7 5405 aaPredicted RBP7.44□□□□□ -1.22
SDC1-203ENST00000403076 C10orf95Q9H7T3 257 aa7.29□□□□□ -1.24
SDC1-203ENST00000403076 KRTAP10-7P60409 375 aaPredicted RBP7.22□□□□□ -1.25
SDC1-203ENST00000403076 SYNE2Q8WXH0 6885 aaKnown RBP7.21□□□□□ -1.26
SDC1-203ENST00000403076 MACF1Q9UPN3 7388 aaKnown RBP7.2□□□□□ -1.26
SDC1-203ENST00000403076 TNP1P09430 55 aa7.18□□□□□ -1.26
SDC1-203ENST00000403076 ROMO1P60602 79 aa7.15□□□□□ -1.27
SDC1-203ENST00000403076 KRTAP10-12P60413 245 aa7.14□□□□□ -1.27
SDC1-203ENST00000403076 PRAC1Q96KF2 57 aa7.09□□□□□ -1.27
SDC1-203ENST00000403076 KRTAP25-1Q3LHN0 102 aa7.07□□□□□ -1.28
SDC1-203ENST00000403076 KRTAP4-8A0A0G2JLE6 195 aa7.03□□□□□ -1.28
SDC1-203ENST00000403076 KRTAP4-8Q9BYQ9 185 aa7.03□□□□□ -1.28
SDC1-203ENST00000403076 KRTAP8-1Q8IUC2 63 aa6.97□□□□□ -1.29
SDC1-203ENST00000403076 KRTAP6-3Q3LI67 103 aa6.93□□□□□ -1.3
SDC1-203ENST00000403076 LCE3AQ5TA76 89 aa6.91□□□□□ -1.3
SDC1-203ENST00000403076 KMT2DO14686 5537 aa6.91□□□□□ -1.3
SDC1-203ENST00000403076 KRTAP23-1A1A580 65 aa6.85□□□□□ -1.31
SDC1-203ENST00000403076 SPRR2FQ96RM1 72 aa6.8□□□□□ -1.32
SDC1-203ENST00000403076 NEBP20929 6669 aa6.77□□□□□ -1.32
SDC1-203ENST00000403076 KRTAP5-9P26371 169 aa6.77□□□□□ -1.33
SDC1-203ENST00000403076 PP632Q6XCG6 107 aa6.76□□□□□ -1.33
SDC1-203ENST00000403076 KRTAP19-5Q3LI72 72 aa6.75□□□□□ -1.33
SDC1-203ENST00000403076 MUC12Q9UKN1 5478 aa6.74□□□□□ -1.33
SDC1-203ENST00000403076 KRTAP19-7Q3SYF9 63 aa6.71□□□□□ -1.34
SDC1-203ENST00000403076 KRTAP12-3P60328 96 aa6.66□□□□□ -1.34
SDC1-203ENST00000403076 MT1EP04732 61 aa6.63□□□□□ -1.35
SDC1-203ENST00000403076 MDN1Q9NU22 5596 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms