RNA–Protein interactions for RNA: ENST00000397901.7

CHMP1A-201, Transcript of charged multivesicular body protein 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP1A, Length 2,483 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-201ENST00000397901 COX6B2Q6YFQ2 88 aa8.48□□□□□ -1.05
CHMP1A-201ENST00000397901 RYR3Q15413 4870 aa8.42□□□□□ -1.06
CHMP1A-201ENST00000397901 TPRXLQ17RH7 258 aa8.42□□□□□ -1.06
CHMP1A-201ENST00000397901 NDUFAF8A1L188 74 aa8.41□□□□□ -1.06
CHMP1A-201ENST00000397901 RPL37P61927 97 aaKnown RBP8.39□□□□□ -1.07
CHMP1A-201ENST00000397901 KRTAP15-1Q3LI76 137 aa8.39□□□□□ -1.07
CHMP1A-201ENST00000397901 HSPG2P98160 4391 aa8.38□□□□□ -1.07
CHMP1A-201ENST00000397901 TNXBP22105 4242 aa8.35□□□□□ -1.07
CHMP1A-201ENST00000397901 LRP1Q07954 4544 aaKnown RBP8.31□□□□□ -1.08
CHMP1A-201ENST00000397901 FAT3Q8TDW7 4589 aa8.29□□□□□ -1.08
CHMP1A-201ENST00000397901 RYR1P21817 5038 aa8.27□□□□□ -1.09
CHMP1A-201ENST00000397901 C10orf95Q9H7T3 257 aa8.26□□□□□ -1.09
CHMP1A-201ENST00000397901 Q5VSD8 79 aa8.24□□□□□ -1.09
CHMP1A-201ENST00000397901 DMBT1Q9UGM3 2413 aaPredicted RBP8.23□□□□□ -1.09
CHMP1A-201ENST00000397901 KRTAP10-8P60410 259 aa8.23□□□□□ -1.09
CHMP1A-201ENST00000397901 A0A0D9SG42 100 aa8.22□□□□□ -1.09
CHMP1A-201ENST00000397901 KRTAP10-6P60371 365 aaPredicted RBP8.21□□□□□ -1.1
CHMP1A-201ENST00000397901 KRTAP13-4Q3LI77 160 aa8.2□□□□□ -1.1
CHMP1A-201ENST00000397901 KRTAP17-1Q9BYP8 105 aa8.18□□□□□ -1.1
CHMP1A-201ENST00000397901 KRTAP3-3Q9BYR6 98 aa8.17□□□□□ -1.1
CHMP1A-201ENST00000397901 EPPK1P58107 5090 aaKnown RBP8.16□□□□□ -1.1
CHMP1A-201ENST00000397901 A0A0A0MQY5 61 aa8.15□□□□□ -1.1
CHMP1A-201ENST00000397901 MYCBP2O75592 4640 aa8.15□□□□□ -1.11
CHMP1A-201ENST00000397901 KIAA1109Q2LD37 5005 aa8.11□□□□□ -1.11
CHMP1A-201ENST00000397901 S4R3F8 94 aa8.1□□□□□ -1.11
CHMP1A-201ENST00000397901 KRTAP3-2Q9BYR7 98 aa8.09□□□□□ -1.11
CHMP1A-201ENST00000397901 XP32Q5T750 250 aa8.06□□□□□ -1.12
CHMP1A-201ENST00000397901 MT1HL1P0DM35 61 aa8.02□□□□□ -1.13
CHMP1A-201ENST00000397901 KRTAP12-2P59991 146 aa8.01□□□□□ -1.13
CHMP1A-201ENST00000397901 KRTAP12-1P59990 96 aa7.92□□□□□ -1.14
CHMP1A-201ENST00000397901 LPAP08519 4548 aa7.89□□□□□ -1.15
CHMP1A-201ENST00000397901 LUZP6Q538Z0 58 aa7.89□□□□□ -1.15
CHMP1A-201ENST00000397901 KRTAP4-5Q9BYR2 181 aa7.8□□□□□ -1.16
CHMP1A-201ENST00000397901 LRP2P98164 4655 aa7.8□□□□□ -1.16
CHMP1A-201ENST00000397901 BIRC6Q9NR09 4857 aa7.77□□□□□ -1.16
CHMP1A-201ENST00000397901 ABCA13Q86UQ4 5058 aa7.76□□□□□ -1.17
CHMP1A-201ENST00000397901 M0QZ58 72 aa7.73□□□□□ -1.17
CHMP1A-201ENST00000397901 PLAC4Q8WY50 150 aa7.73□□□□□ -1.17
CHMP1A-201ENST00000397901 PCLOQ9Y6V0 5065 aa7.64□□□□□ -1.19
CHMP1A-201ENST00000397901 HERC2O95714 4834 aa7.59□□□□□ -1.19
CHMP1A-201ENST00000397901 R4GN34 69 aa7.52□□□□□ -1.21
CHMP1A-201ENST00000397901 MUC17Q685J3 4493 aa7.51□□□□□ -1.21
CHMP1A-201ENST00000397901 J3QL48 77 aa7.5□□□□□ -1.21
CHMP1A-201ENST00000397901 SEC61BP60468 96 aaKnown RBP7.45□□□□□ -1.22
CHMP1A-201ENST00000397901 LORP23490 312 aaPredicted RBP7.44□□□□□ -1.22
CHMP1A-201ENST00000397901 KRTAP4-1Q9BYQ7 146 aa7.39□□□□□ -1.23
CHMP1A-201ENST00000397901 PP632Q6XCG6 107 aa7.38□□□□□ -1.23
CHMP1A-201ENST00000397901 HERC1Q15751 4861 aa7.36□□□□□ -1.23
CHMP1A-201ENST00000397901 KRTAP19-2Q3LHN2 52 aa7.26□□□□□ -1.25
CHMP1A-201ENST00000397901 HMCN2Q8NDA2 5059 aa7.18□□□□□ -1.26
CHMP1A-201ENST00000397901 MUC2Q02817 5179 aa7.18□□□□□ -1.26
CHMP1A-201ENST00000397901 CAMK2N1Q7Z7J9 78 aa7.18□□□□□ -1.26
CHMP1A-201ENST00000397901 FLGP20930 4061 aaPredicted RBP7.17□□□□□ -1.26
CHMP1A-201ENST00000397901 SPRR5A0A1B0GTR4 108 aa7.1□□□□□ -1.27
CHMP1A-201ENST00000397901 KRTAP23-1A1A580 65 aa6.99□□□□□ -1.29
CHMP1A-201ENST00000397901 PRO2289Q9P1D8 64 aa6.98□□□□□ -1.29
CHMP1A-201ENST00000397901 UBR4Q5T4S7 5183 aa6.98□□□□□ -1.29
CHMP1A-201ENST00000397901 RNF213Q63HN8 5207 aa6.93□□□□□ -1.3
CHMP1A-201ENST00000397901 TNP1P09430 55 aa6.92□□□□□ -1.3
CHMP1A-201ENST00000397901 LCE2CQ5TA81 110 aa6.91□□□□□ -1.3
CHMP1A-201ENST00000397901 FAT4Q6V0I7 4981 aa6.83□□□□□ -1.32
CHMP1A-201ENST00000397901 INE1O15225 51 aa6.79□□□□□ -1.32
CHMP1A-201ENST00000397901 MT1HP80294 61 aa6.72□□□□□ -1.33
CHMP1A-201ENST00000397901 M0R2T5 61 aa6.65□□□□□ -1.35
CHMP1A-201ENST00000397901 KRTAP19-1Q8IUB9 90 aa6.65□□□□□ -1.35
CHMP1A-201ENST00000397901 SPRR2GQ9BYE4 73 aa6.65□□□□□ -1.35
CHMP1A-201ENST00000397901 MT2AP02795 61 aa6.56□□□□□ -1.36
CHMP1A-201ENST00000397901 MT1FP04733 61 aa6.54□□□□□ -1.36
CHMP1A-201ENST00000397901 LCE3AQ5TA76 89 aa6.54□□□□□ -1.36
CHMP1A-201ENST00000397901 KRTAP9-8Q9BYQ0 159 aa6.54□□□□□ -1.36
CHMP1A-201ENST00000397901 KRTAP10-10P60014 251 aa6.5□□□□□ -1.37
CHMP1A-201ENST00000397901 KRTAP19-8Q3LI54 63 aa6.37□□□□□ -1.39
CHMP1A-201ENST00000397901 KRTAP8-1Q8IUC2 63 aa6.31□□□□□ -1.4
CHMP1A-201ENST00000397901 MT1BP07438 61 aa6.29□□□□□ -1.4
CHMP1A-201ENST00000397901 KRTAP10-5P60370 271 aa6.29□□□□□ -1.4
CHMP1A-201ENST00000397901 KRTAP9-3Q9BYQ3 159 aa6.28□□□□□ -1.4
CHMP1A-201ENST00000397901 MT1XP80297 61 aa6.27□□□□□ -1.4
CHMP1A-201ENST00000397901 KRTAP10-12P60413 245 aa6.21□□□□□ -1.41
CHMP1A-201ENST00000397901 KRTAP12-3P60328 96 aa6.2□□□□□ -1.42
CHMP1A-201ENST00000397901 KRTAP10-7P60409 375 aaPredicted RBP6.15□□□□□ -1.42
CHMP1A-201ENST00000397901 LCE2AQ5TA79 106 aaPredicted RBP6.14□□□□□ -1.43
CHMP1A-201ENST00000397901 LCE2BO14633 110 aa6.06□□□□□ -1.44
CHMP1A-201ENST00000397901 FSIP2Q5CZC0 6907 aa6.06□□□□□ -1.44
CHMP1A-201ENST00000397901 KRTAP19-5Q3LI72 72 aa5.91□□□□□ -1.46
CHMP1A-201ENST00000397901 USH2AO75445 5202 aa5.91□□□□□ -1.46
CHMP1A-201ENST00000397901 KMT2DO14686 5537 aa5.88□□□□□ -1.47
CHMP1A-201ENST00000397901 LCE3CQ5T5A8 94 aa5.83□□□□□ -1.48
CHMP1A-201ENST00000397901 KRTAP4-8A0A0G2JLE6 195 aa5.76□□□□□ -1.49
CHMP1A-201ENST00000397901 KRTAP4-8Q9BYQ9 185 aa5.76□□□□□ -1.49
CHMP1A-201ENST00000397901 KRTAP9-2Q9BYQ4 174 aa5.74□□□□□ -1.49
CHMP1A-201ENST00000397901 KRTAP2-3P0C7H8 128 aa5.68□□□□□ -1.5
CHMP1A-201ENST00000397901 KRTAP2-4Q9BYR9 128 aa5.68□□□□□ -1.5
CHMP1A-201ENST00000397901 KRTAP2-1Q9BYU5 128 aa5.68□□□□□ -1.5
CHMP1A-201ENST00000397901 KRTAP9-6A8MVA2 160 aa5.68□□□□□ -1.5
CHMP1A-201ENST00000397901 SSPOA2VEC9 5147 aa5.67□□□□□ -1.5
CHMP1A-201ENST00000397901 LCE2DQ5TA82 110 aaPredicted RBP5.63□□□□□ -1.51
CHMP1A-201ENST00000397901 KRTAP4-7Q9BYR0 210 aa5.6□□□□□ -1.51
CHMP1A-201ENST00000397901 KRTAP19-7Q3SYF9 63 aa5.58□□□□□ -1.52
CHMP1A-201ENST00000397901 KRTAP19-6Q3LI70 58 aa5.53□□□□□ -1.52
CHMP1A-201ENST00000397901 CRCT1Q9UGL9 99 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms