RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 FAM236AA0A1B0GUQ0 79 aa10.06□□□□□ -0.8
CLN3-207ENST00000395653 FAM236BA0A1B0GV22 79 aa10.06□□□□□ -0.8
CLN3-207ENST00000395653 SMIM20Q8N5G0 67 aa10.04□□□□□ -0.8
CLN3-207ENST00000395653 SSPOA2VEC9 5147 aa10.03□□□□□ -0.8
CLN3-207ENST00000395653 TRAV7A0A075B6U4 112 aa9.99□□□□□ -0.81
CLN3-207ENST00000395653 NDUFC1O43677 76 aa9.97□□□□□ -0.81
CLN3-207ENST00000395653 DMAC1Q96GE9 116 aa9.9□□□□□ -0.82
CLN3-207ENST00000395653 KRTAP19-1Q8IUB9 90 aa9.87□□□□□ -0.83
CLN3-207ENST00000395653 H0YAA0 97 aa9.84□□□□□ -0.83
CLN3-207ENST00000395653 SPRR2GQ9BYE4 73 aa9.81□□□□□ -0.84
CLN3-207ENST00000395653 KRTAP19-6Q3LI70 58 aa9.79□□□□□ -0.84
CLN3-207ENST00000395653 SERP2Q8N6R1 65 aa9.77□□□□□ -0.85
CLN3-207ENST00000395653 CRIPTQ9P021 101 aa9.77□□□□□ -0.85
CLN3-207ENST00000395653 SNURFQ9Y675 71 aa9.74□□□□□ -0.85
CLN3-207ENST00000395653 FCGBPQ9Y6R7 5405 aaPredicted RBP9.72□□□□□ -0.85
CLN3-207ENST00000395653 ACYP2P14621 99 aa9.71□□□□□ -0.86
CLN3-207ENST00000395653 KRTAP19-8Q3LI54 63 aa9.7□□□□□ -0.86
CLN3-207ENST00000395653 ADM2Q7Z4H4 148 aa9.7□□□□□ -0.86
CLN3-207ENST00000395653 C20orf197Q8N268 126 aa9.7□□□□□ -0.86
CLN3-207ENST00000395653 Q5VV11 94 aa9.66□□□□□ -0.86
CLN3-207ENST00000395653 MT1BP07438 61 aa9.65□□□□□ -0.86
CLN3-207ENST00000395653 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.62□□□□□ -0.87
CLN3-207ENST00000395653 SPANXA2-OT1Q8N9U9 137 aa9.62□□□□□ -0.87
CLN3-207ENST00000395653 SPTSSBQ8NFR3 76 aa9.55□□□□□ -0.88
CLN3-207ENST00000395653 COX7CP15954 63 aa9.54□□□□□ -0.88
CLN3-207ENST00000395653 CHKB-CPT1BH3BT56 60 aa9.52□□□□□ -0.89
CLN3-207ENST00000395653 P0C880 135 aa9.51□□□□□ -0.89
CLN3-207ENST00000395653 KRTAP3-2Q9BYR7 98 aa9.49□□□□□ -0.89
CLN3-207ENST00000395653 R4GN34 69 aa9.45□□□□□ -0.9
CLN3-207ENST00000395653 A6NN06 94 aa9.43□□□□□ -0.9
CLN3-207ENST00000395653 KRTAP9-7A8MTY7 169 aa9.41□□□□□ -0.9
CLN3-207ENST00000395653 MACF1Q9UPN3 7388 aaKnown RBP9.41□□□□□ -0.9
CLN3-207ENST00000395653 M0QZ58 72 aa9.38□□□□□ -0.91
CLN3-207ENST00000395653 KRTAP10-5P60370 271 aa9.38□□□□□ -0.91
CLN3-207ENST00000395653 H7BZZ5 65 aa9.34□□□□□ -0.91
CLN3-207ENST00000395653 ANAPC13Q9BS18 74 aa9.34□□□□□ -0.91
CLN3-207ENST00000395653 CYSTM1Q9H1C7 97 aa9.32□□□□□ -0.92
CLN3-207ENST00000395653 COA5Q86WW8 74 aa9.31□□□□□ -0.92
CLN3-207ENST00000395653 PLAC4Q8WY50 150 aa9.25□□□□□ -0.93
CLN3-207ENST00000395653 SYNE2Q8WXH0 6885 aaKnown RBP9.25□□□□□ -0.93
CLN3-207ENST00000395653 LINC01554Q52M75 96 aa9.21□□□□□ -0.94
CLN3-207ENST00000395653 PRO2289Q9P1D8 64 aa9.14□□□□□ -0.95
CLN3-207ENST00000395653 CCDC179H3BU77 68 aa9.14□□□□□ -0.95
CLN3-207ENST00000395653 MT1XP80297 61 aa9.12□□□□□ -0.95
CLN3-207ENST00000395653 KRTAP6-3Q3LI67 103 aa9.1□□□□□ -0.95
CLN3-207ENST00000395653 SEC61GP60059 68 aa9.05□□□□□ -0.96
CLN3-207ENST00000395653 SERP1Q9Y6X1 66 aa9.03□□□□□ -0.96
CLN3-207ENST00000395653 KRTAP13-4Q3LI77 160 aa9□□□□□ -0.97
CLN3-207ENST00000395653 ATP5EP56381 51 aaPredicted RBP8.98□□□□□ -0.97
CLN3-207ENST00000395653 KRTAP12-2P59991 146 aa8.87□□□□□ -0.99
CLN3-207ENST00000395653 A0A1B0GU33 70 aa8.86□□□□□ -0.99
CLN3-207ENST00000395653 TMEM258P61165 79 aa8.84□□□□□ -0.99
CLN3-207ENST00000395653 A0A1B0GU69 56 aa8.83□□□□□ -1
CLN3-207ENST00000395653 KRTAP5-9P26371 169 aa8.82□□□□□ -1
CLN3-207ENST00000395653 SPATA8Q6RVD6 105 aa8.8□□□□□ -1
CLN3-207ENST00000395653 A0A0D9SG42 100 aa8.74□□□□□ -1.01
CLN3-207ENST00000395653 KMT2DO14686 5537 aa8.73□□□□□ -1.01
CLN3-207ENST00000395653 CAMK2N1Q7Z7J9 78 aa8.72□□□□□ -1.01
CLN3-207ENST00000395653 KRTAP10-7P60409 375 aaPredicted RBP8.7□□□□□ -1.02
CLN3-207ENST00000395653 MUC12Q9UKN1 5478 aa8.7□□□□□ -1.02
CLN3-207ENST00000395653 KRTAP10-12P60413 245 aa8.68□□□□□ -1.02
CLN3-207ENST00000395653 PRR15LQ9BU68 103 aa8.67□□□□□ -1.02
CLN3-207ENST00000395653 KRTAP8-1Q8IUC2 63 aa8.66□□□□□ -1.02
CLN3-207ENST00000395653 LINC01558Q9Y6Z2 57 aa8.64□□□□□ -1.03
CLN3-207ENST00000395653 NEBP20929 6669 aa8.63□□□□□ -1.03
CLN3-207ENST00000395653 SMIM26A0A096LP01 95 aa8.63□□□□□ -1.03
CLN3-207ENST00000395653 KRTAP4-8A0A0G2JLE6 195 aa8.62□□□□□ -1.03
CLN3-207ENST00000395653 SPINT4Q6UDR6 99 aa8.62□□□□□ -1.03
CLN3-207ENST00000395653 KRTAP4-8Q9BYQ9 185 aa8.62□□□□□ -1.03
CLN3-207ENST00000395653 KRTAP12-1P59990 96 aa8.61□□□□□ -1.03
CLN3-207ENST00000395653 SPRR2FQ96RM1 72 aa8.6□□□□□ -1.03
CLN3-207ENST00000395653 A8MU10 97 aa8.52□□□□□ -1.05
CLN3-207ENST00000395653 MDN1Q9NU22 5596 aa8.5□□□□□ -1.05
CLN3-207ENST00000395653 SPRR2EP22531 72 aa8.4□□□□□ -1.06
CLN3-207ENST00000395653 SPRR2BP35325 72 aa8.4□□□□□ -1.06
CLN3-207ENST00000395653 SPRR2AP35326 72 aa8.4□□□□□ -1.06
CLN3-207ENST00000395653 UQCR11O14957 56 aa8.38□□□□□ -1.07
CLN3-207ENST00000395653 LCE1AQ5T7P2 110 aa8.34□□□□□ -1.07
CLN3-207ENST00000395653 V9GYY9 64 aa8.32□□□□□ -1.08
CLN3-207ENST00000395653 KRTAP20-1Q3LI63 56 aa8.28□□□□□ -1.08
CLN3-207ENST00000395653 Q1T7F1 81 aa8.27□□□□□ -1.09
CLN3-207ENST00000395653 PCP4P48539 62 aa8.23□□□□□ -1.09
CLN3-207ENST00000395653 MIR22HGQ0VDD5 57 aa8.2□□□□□ -1.1
CLN3-207ENST00000395653 PSPHP1O15172 72 aa8.2□□□□□ -1.1
CLN3-207ENST00000395653 C10orf95Q9H7T3 257 aa8.2□□□□□ -1.1
CLN3-207ENST00000395653 KRTAP2-3P0C7H8 128 aa8.15□□□□□ -1.1
CLN3-207ENST00000395653 KRTAP19-7Q3SYF9 63 aa8.15□□□□□ -1.1
CLN3-207ENST00000395653 KRTAP2-4Q9BYR9 128 aa8.15□□□□□ -1.1
CLN3-207ENST00000395653 TNP1P09430 55 aa8.13□□□□□ -1.11
CLN3-207ENST00000395653 SPRR2DP22532 72 aa8.12□□□□□ -1.11
CLN3-207ENST00000395653 RPS28P62857 69 aaKnown RBP8.09□□□□□ -1.11
CLN3-207ENST00000395653 MT1EP04732 61 aa8.06□□□□□ -1.12
CLN3-207ENST00000395653 K7ERS5 55 aa8.01□□□□□ -1.13
CLN3-207ENST00000395653 KRTAP19-5Q3LI72 72 aa8□□□□□ -1.13
CLN3-207ENST00000395653 LCE3AQ5TA76 89 aa7.97□□□□□ -1.13
CLN3-207ENST00000395653 A6NED7 52 aa7.95□□□□□ -1.14
CLN3-207ENST00000395653 KRTAP19-3Q7Z4W3 81 aa7.95□□□□□ -1.14
CLN3-207ENST00000395653 LCE5AQ5TCM9 118 aa7.93□□□□□ -1.14
CLN3-207ENST00000395653 KRTAP2-2Q9BYT5 123 aa7.91□□□□□ -1.14
CLN3-207ENST00000395653 KRTAP2-1Q9BYU5 128 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms