RNA–Protein interactions for RNA: ENST00000395060.5

CLIP2-203, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP2, Length 3,141 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-203ENST00000395060 LRP1Q07954 4544 aaKnown RBP7.49□□□□□ -1.21
CLIP2-203ENST00000395060 C10orf95Q9H7T3 257 aa7.49□□□□□ -1.21
CLIP2-203ENST00000395060 KRTAP13-4Q3LI77 160 aa7.48□□□□□ -1.21
CLIP2-203ENST00000395060 KRTAP10-4P60372 401 aaPredicted RBP7.45□□□□□ -1.22
CLIP2-203ENST00000395060 SPINT4Q6UDR6 99 aa7.44□□□□□ -1.22
CLIP2-203ENST00000395060 P0C880 135 aa7.43□□□□□ -1.22
CLIP2-203ENST00000395060 RPS29P62273 56 aaKnown RBP7.41□□□□□ -1.22
CLIP2-203ENST00000395060 HSPG2P98160 4391 aa7.41□□□□□ -1.22
CLIP2-203ENST00000395060 RPL37P61927 97 aaKnown RBP7.41□□□□□ -1.22
CLIP2-203ENST00000395060 KRTAP10-6P60371 365 aaPredicted RBP7.38□□□□□ -1.23
CLIP2-203ENST00000395060 PKHD1L1Q86WI1 4243 aa7.38□□□□□ -1.23
CLIP2-203ENST00000395060 KRTAP10-8P60410 259 aa7.38□□□□□ -1.23
CLIP2-203ENST00000395060 TPRXLQ17RH7 258 aa7.38□□□□□ -1.23
CLIP2-203ENST00000395060 RYR3Q15413 4870 aa7.36□□□□□ -1.23
CLIP2-203ENST00000395060 KRTAP3-3Q9BYR6 98 aa7.35□□□□□ -1.23
CLIP2-203ENST00000395060 Q5VSD8 79 aa7.32□□□□□ -1.24
CLIP2-203ENST00000395060 KRTAP3-2Q9BYR7 98 aa7.29□□□□□ -1.24
CLIP2-203ENST00000395060 S4R3F8 94 aa7.29□□□□□ -1.24
CLIP2-203ENST00000395060 KIAA1109Q2LD37 5005 aa7.28□□□□□ -1.24
CLIP2-203ENST00000395060 LPAP08519 4548 aa7.26□□□□□ -1.25
CLIP2-203ENST00000395060 KRTAP12-2P59991 146 aa7.25□□□□□ -1.25
CLIP2-203ENST00000395060 KRTAP17-1Q9BYP8 105 aa7.25□□□□□ -1.25
CLIP2-203ENST00000395060 FAT3Q8TDW7 4589 aa7.25□□□□□ -1.25
CLIP2-203ENST00000395060 TNXBP22105 4242 aa7.24□□□□□ -1.25
CLIP2-203ENST00000395060 NDUFAF8A1L188 74 aa7.22□□□□□ -1.25
CLIP2-203ENST00000395060 RYR1P21817 5038 aa7.18□□□□□ -1.26
CLIP2-203ENST00000395060 XP32Q5T750 250 aa7.18□□□□□ -1.26
CLIP2-203ENST00000395060 EPPK1P58107 5090 aaKnown RBP7.12□□□□□ -1.27
CLIP2-203ENST00000395060 LRP2P98164 4655 aa7.1□□□□□ -1.27
CLIP2-203ENST00000395060 KRTAP12-1P59990 96 aa7.09□□□□□ -1.27
CLIP2-203ENST00000395060 KRTAP15-1Q3LI76 137 aa7.03□□□□□ -1.28
CLIP2-203ENST00000395060 MT1HL1P0DM35 61 aa7.02□□□□□ -1.29
CLIP2-203ENST00000395060 KRTAP4-5Q9BYR2 181 aa6.97□□□□□ -1.29
CLIP2-203ENST00000395060 ABCA13Q86UQ4 5058 aa6.96□□□□□ -1.3
CLIP2-203ENST00000395060 M0QZ58 72 aa6.95□□□□□ -1.3
CLIP2-203ENST00000395060 R4GN34 69 aa6.88□□□□□ -1.31
CLIP2-203ENST00000395060 LORP23490 312 aaPredicted RBP6.81□□□□□ -1.32
CLIP2-203ENST00000395060 LUZP6Q538Z0 58 aa6.74□□□□□ -1.33
CLIP2-203ENST00000395060 HERC2O95714 4834 aa6.74□□□□□ -1.33
CLIP2-203ENST00000395060 J3QL48 77 aa6.72□□□□□ -1.33
CLIP2-203ENST00000395060 MUC2Q02817 5179 aa6.72□□□□□ -1.33
CLIP2-203ENST00000395060 PLAC4Q8WY50 150 aa6.7□□□□□ -1.34
CLIP2-203ENST00000395060 CAMK2N1Q7Z7J9 78 aa6.63□□□□□ -1.35
CLIP2-203ENST00000395060 KRTAP4-1Q9BYQ7 146 aa6.58□□□□□ -1.36
CLIP2-203ENST00000395060 SEC61BP60468 96 aaKnown RBP6.56□□□□□ -1.36
CLIP2-203ENST00000395060 HERC1Q15751 4861 aa6.54□□□□□ -1.36
CLIP2-203ENST00000395060 MUC17Q685J3 4493 aa6.52□□□□□ -1.37
CLIP2-203ENST00000395060 BIRC6Q9NR09 4857 aa6.43□□□□□ -1.38
CLIP2-203ENST00000395060 RNF213Q63HN8 5207 aa6.43□□□□□ -1.38
CLIP2-203ENST00000395060 PCLOQ9Y6V0 5065 aa6.41□□□□□ -1.38
CLIP2-203ENST00000395060 FAT4Q6V0I7 4981 aa6.38□□□□□ -1.39
CLIP2-203ENST00000395060 KRTAP19-2Q3LHN2 52 aa6.29□□□□□ -1.4
CLIP2-203ENST00000395060 PP632Q6XCG6 107 aa6.29□□□□□ -1.4
CLIP2-203ENST00000395060 UBR4Q5T4S7 5183 aa6.25□□□□□ -1.41
CLIP2-203ENST00000395060 HMCN2Q8NDA2 5059 aa6.25□□□□□ -1.41
CLIP2-203ENST00000395060 TNP1P09430 55 aa6.25□□□□□ -1.41
CLIP2-203ENST00000395060 FLGP20930 4061 aaPredicted RBP6.22□□□□□ -1.41
CLIP2-203ENST00000395060 M0R2T5 61 aa6.09□□□□□ -1.43
CLIP2-203ENST00000395060 LCE2CQ5TA81 110 aa6.02□□□□□ -1.45
CLIP2-203ENST00000395060 LCE3AQ5TA76 89 aa5.98□□□□□ -1.45
CLIP2-203ENST00000395060 SPRR5A0A1B0GTR4 108 aa5.93□□□□□ -1.46
CLIP2-203ENST00000395060 MT1HP80294 61 aa5.9□□□□□ -1.47
CLIP2-203ENST00000395060 KRTAP19-1Q8IUB9 90 aa5.89□□□□□ -1.47
CLIP2-203ENST00000395060 KRTAP10-10P60014 251 aa5.87□□□□□ -1.47
CLIP2-203ENST00000395060 KRTAP23-1A1A580 65 aa5.82□□□□□ -1.48
CLIP2-203ENST00000395060 SPRR2GQ9BYE4 73 aa5.8□□□□□ -1.48
CLIP2-203ENST00000395060 FSIP2Q5CZC0 6907 aa5.8□□□□□ -1.48
CLIP2-203ENST00000395060 MT1FP04733 61 aa5.8□□□□□ -1.48
CLIP2-203ENST00000395060 MT2AP02795 61 aa5.77□□□□□ -1.49
CLIP2-203ENST00000395060 USH2AO75445 5202 aa5.74□□□□□ -1.49
CLIP2-203ENST00000395060 KRTAP9-8Q9BYQ0 159 aa5.72□□□□□ -1.49
CLIP2-203ENST00000395060 KMT2DO14686 5537 aa5.64□□□□□ -1.51
CLIP2-203ENST00000395060 KRTAP12-3P60328 96 aa5.62□□□□□ -1.51
CLIP2-203ENST00000395060 KRTAP8-1Q8IUC2 63 aa5.59□□□□□ -1.51
CLIP2-203ENST00000395060 PRO2289Q9P1D8 64 aa5.59□□□□□ -1.51
CLIP2-203ENST00000395060 KRTAP10-5P60370 271 aa5.59□□□□□ -1.52
CLIP2-203ENST00000395060 KRTAP10-12P60413 245 aa5.59□□□□□ -1.52
CLIP2-203ENST00000395060 MT1XP80297 61 aa5.57□□□□□ -1.52
CLIP2-203ENST00000395060 KRTAP10-7P60409 375 aaPredicted RBP5.57□□□□□ -1.52
CLIP2-203ENST00000395060 MT1BP07438 61 aa5.54□□□□□ -1.52
CLIP2-203ENST00000395060 KRTAP19-8Q3LI54 63 aa5.49□□□□□ -1.53
CLIP2-203ENST00000395060 KRTAP9-3Q9BYQ3 159 aa5.47□□□□□ -1.53
CLIP2-203ENST00000395060 INE1O15225 51 aa5.42□□□□□ -1.54
CLIP2-203ENST00000395060 KRTAP19-5Q3LI72 72 aa5.35□□□□□ -1.55
CLIP2-203ENST00000395060 LCE2BO14633 110 aa5.34□□□□□ -1.55
CLIP2-203ENST00000395060 KRTAP4-8A0A0G2JLE6 195 aa5.29□□□□□ -1.56
CLIP2-203ENST00000395060 KRTAP4-8Q9BYQ9 185 aa5.29□□□□□ -1.56
CLIP2-203ENST00000395060 LCE3CQ5T5A8 94 aa5.25□□□□□ -1.57
CLIP2-203ENST00000395060 LCE2AQ5TA79 106 aaPredicted RBP5.24□□□□□ -1.57
CLIP2-203ENST00000395060 KRTAP4-7Q9BYR0 210 aa5.23□□□□□ -1.57
CLIP2-203ENST00000395060 KRTAP9-6A8MVA2 160 aa5.2□□□□□ -1.58
CLIP2-203ENST00000395060 SSPOA2VEC9 5147 aa5.01□□□□□ -1.61
CLIP2-203ENST00000395060 DSTQ03001 7570 aaKnown RBP4.97□□□□□ -1.61
CLIP2-203ENST00000395060 KRTAP19-7Q3SYF9 63 aa4.95□□□□□ -1.62
CLIP2-203ENST00000395060 CRCT1Q9UGL9 99 aa4.89□□□□□ -1.63
CLIP2-203ENST00000395060 KRTAP2-3P0C7H8 128 aa4.88□□□□□ -1.63
CLIP2-203ENST00000395060 KRTAP2-4Q9BYR9 128 aa4.88□□□□□ -1.63
CLIP2-203ENST00000395060 KRTAP2-1Q9BYU5 128 aa4.88□□□□□ -1.63
CLIP2-203ENST00000395060 MUC12Q9UKN1 5478 aa4.87□□□□□ -1.63
CLIP2-203ENST00000395060 LOC100996750A0A140TA64 210 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms