RNA–Protein interactions for RNA: ENST00000390467.3

TRAV40-201, Transcript of T cell receptor alpha variable 40, humanhuman

APPRIS P1 BASIC

Gene TRAV40, Length 317 nt, Biotype TR V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40-201ENST00000390467 DNAH6Q9C0G6 4158 aa0.4□□□□□ -2.35
TRAV40-201ENST00000390467 CELSR3Q9NYQ7 3312 aa0.39□□□□□ -2.35
TRAV40-201ENST00000390467 C5orf42Q9H799 3197 aa0.39□□□□□ -2.35
TRAV40-201ENST00000390467 DMDP11532 3685 aa0.39□□□□□ -2.35
TRAV40-201ENST00000390467 MYO18BQ8IUG5 2567 aa0.39□□□□□ -2.35
TRAV40-201ENST00000390467 MUC5BQ9HC84 5762 aaPredicted RBP0.39□□□□□ -2.35
TRAV40-201ENST00000390467 PRM1P04553 51 aa0.39□□□□□ -2.35
TRAV40-201ENST00000390467 TNP1P09430 55 aa0.39□□□□□ -2.35
TRAV40-201ENST00000390467 U3KQA8 63 aa0.39□□□□□ -2.35
TRAV40-201ENST00000390467 CSMD1Q96PZ7 3565 aa0.39□□□□□ -2.35
TRAV40-201ENST00000390467 TEP1Q99973 2627 aaKnown RBP0.39□□□□□ -2.35
TRAV40-201ENST00000390467 FAT3Q8TDW7 4589 aa0.39□□□□□ -2.35
TRAV40-201ENST00000390467 ACACBO00763 2458 aa0.39□□□□□ -2.35
TRAV40-201ENST00000390467 HRNRQ86YZ3 2850 aaPredicted RBP0.39□□□□□ -2.35
TRAV40-201ENST00000390467 ADGRG4Q8IZF6 3080 aa0.39□□□□□ -2.35
TRAV40-201ENST00000390467 CACNA1AO00555 2505 aa0.38□□□□□ -2.35
TRAV40-201ENST00000390467 TLN2Q9Y4G6 2542 aa0.38□□□□□ -2.35
TRAV40-201ENST00000390467 FRYLO94915 3013 aa0.38□□□□□ -2.35
TRAV40-201ENST00000390467 APOBP04114 4563 aaKnown RBP0.38□□□□□ -2.35
TRAV40-201ENST00000390467 PKHD1P08F94 4074 aa0.38□□□□□ -2.35
TRAV40-201ENST00000390467 SONP18583 2426 aaKnown RBP0.38□□□□□ -2.35
TRAV40-201ENST00000390467 DNAH1Q9P2D7 4330 aa0.38□□□□□ -2.35
TRAV40-201ENST00000390467 TRRAPQ9Y4A5 3859 aa0.38□□□□□ -2.35
TRAV40-201ENST00000390467 LRP1Q07954 4544 aaKnown RBP0.37□□□□□ -2.35
TRAV40-201ENST00000390467 TEX15Q9BXT5 2789 aa0.37□□□□□ -2.35
TRAV40-201ENST00000390467 LPAP08519 4548 aa0.37□□□□□ -2.35
TRAV40-201ENST00000390467 DOPEY1Q5JWR5 2465 aa0.37□□□□□ -2.35
TRAV40-201ENST00000390467 MXRA5Q9NR99 2828 aa0.37□□□□□ -2.35
TRAV40-201ENST00000390467 H3BNG1 76 aa0.37□□□□□ -2.35
TRAV40-201ENST00000390467 TRIOO75962 3097 aa0.37□□□□□ -2.35
TRAV40-201ENST00000390467 VPS13CQ709C8 3753 aa0.36□□□□□ -2.35
TRAV40-201ENST00000390467 IGSF10Q6WRI0 2623 aa0.36□□□□□ -2.35
TRAV40-201ENST00000390467 SVEP1Q4LDE5 3571 aa0.36□□□□□ -2.35
TRAV40-201ENST00000390467 PLECQ15149 4684 aaKnown RBP0.36□□□□□ -2.35
TRAV40-201ENST00000390467 MKI67P46013 3256 aaKnown RBP0.36□□□□□ -2.35
TRAV40-201ENST00000390467 DNAH10Q8IVF4 4471 aa0.36□□□□□ -2.35
TRAV40-201ENST00000390467 SPART-AS1P0CW21 52 aa0.36□□□□□ -2.35
TRAV40-201ENST00000390467 WDR87Q6ZQQ6 2873 aa0.36□□□□□ -2.35
TRAV40-201ENST00000390467 ITPR2Q14571 2701 aa0.36□□□□□ -2.35
TRAV40-201ENST00000390467 CFAP46Q8IYW2 2715 aa0.36□□□□□ -2.35
TRAV40-201ENST00000390467 HTTP42858 3142 aa0.35□□□□□ -2.35
TRAV40-201ENST00000390467 SZT2Q5T011 3432 aa0.35□□□□□ -2.35
TRAV40-201ENST00000390467 MDN1Q9NU22 5596 aa0.35□□□□□ -2.35
TRAV40-201ENST00000390467 FAT1Q14517 4588 aa0.35□□□□□ -2.35
TRAV40-201ENST00000390467 SPTAN1Q13813 2472 aaKnown RBP0.35□□□□□ -2.35
TRAV40-201ENST00000390467 H3BUX3 64 aa0.35□□□□□ -2.35
TRAV40-201ENST00000390467 DEFB1P60022 68 aa0.35□□□□□ -2.35
TRAV40-201ENST00000390467 COL6A3P12111 3177 aa0.35□□□□□ -2.35
TRAV40-201ENST00000390467 TGP01266 2768 aa0.35□□□□□ -2.35
TRAV40-201ENST00000390467 CMYA5Q8N3K9 4069 aa0.35□□□□□ -2.35
TRAV40-201ENST00000390467 FLNAP21333 2647 aaKnown RBP0.34□□□□□ -2.35
TRAV40-201ENST00000390467 APELAP0DMC3 54 aa0.34□□□□□ -2.36
TRAV40-201ENST00000390467 DEFB110Q30KQ9 67 aa0.34□□□□□ -2.36
TRAV40-201ENST00000390467 KRTAP8-1Q8IUC2 63 aa0.34□□□□□ -2.36
TRAV40-201ENST00000390467 LAMA3Q16787 3333 aa0.34□□□□□ -2.36
TRAV40-201ENST00000390467 LRP1BQ9NZR2 4599 aa0.33□□□□□ -2.36
TRAV40-201ENST00000390467 A0A096LNI7 61 aa0.33□□□□□ -2.36
TRAV40-201ENST00000390467 KRTAP21-1Q3LI58 79 aa0.33□□□□□ -2.36
TRAV40-201ENST00000390467 RHPN1-AS1Q9BWJ2 59 aa0.33□□□□□ -2.36
TRAV40-201ENST00000390467 MAP1AP78559 2803 aaPredicted RBP0.33□□□□□ -2.36
TRAV40-201ENST00000390467 NIPBLQ6KC79 2804 aaeCLIP0.33□□□□□ -2.36
TRAV40-201ENST00000390467 NBEAL1Q6ZS30 2694 aa0.33□□□□□ -2.36
TRAV40-201ENST00000390467 MGAM2Q2M2H8 2515 aa0.33□□□□□ -2.36
TRAV40-201ENST00000390467 DNAH17Q9UFH2 4485 aa0.33□□□□□ -2.36
TRAV40-201ENST00000390467 DNAH5Q8TE73 4624 aa0.32□□□□□ -2.36
TRAV40-201ENST00000390467 MUC3AQ02505 3323 aa0.32□□□□□ -2.36
TRAV40-201ENST00000390467 SYNE1Q8NF91 8797 aaKnown RBP0.32□□□□□ -2.36
TRAV40-201ENST00000390467 LAMA1P25391 3075 aa0.32□□□□□ -2.36
TRAV40-201ENST00000390467 FREM2Q5SZK8 3169 aa0.31□□□□□ -2.36
TRAV40-201ENST00000390467 PHGR1C9JFL3 82 aa0.31□□□□□ -2.36
TRAV40-201ENST00000390467 SMR3BP02814 79 aaPredicted RBP0.31□□□□□ -2.36
TRAV40-201ENST00000390467 MT1AP04731 61 aa0.31□□□□□ -2.36
TRAV40-201ENST00000390467 SPRR2DP22532 72 aa0.31□□□□□ -2.36
TRAV40-201ENST00000390467 DEFB136Q30KP8 78 aa0.31□□□□□ -2.36
TRAV40-201ENST00000390467 BOD1L1Q8NFC6 3051 aa0.31□□□□□ -2.36
TRAV40-201ENST00000390467 STAB2Q8WWQ8 2551 aa0.3□□□□□ -2.36
TRAV40-201ENST00000390467 CSMD2Q7Z408 3487 aa0.3□□□□□ -2.36
TRAV40-201ENST00000390467 HTN1P15515 57 aa0.3□□□□□ -2.36
TRAV40-201ENST00000390467 KRTAP19-5Q3LI72 72 aa0.3□□□□□ -2.36
TRAV40-201ENST00000390467 DEFB124Q8NES8 71 aa0.3□□□□□ -2.36
TRAV40-201ENST00000390467 DYNC1H1Q14204 4646 aaKnown RBP0.3□□□□□ -2.36
TRAV40-201ENST00000390467 CEP350Q5VT06 3117 aa0.29□□□□□ -2.36
TRAV40-201ENST00000390467 MUC5ACP98088 5654 aa0.29□□□□□ -2.36
TRAV40-201ENST00000390467 DCHS1Q96JQ0 3298 aa0.29□□□□□ -2.36
TRAV40-201ENST00000390467 CEP295Q9C0D2 2601 aa0.29□□□□□ -2.36
TRAV40-201ENST00000390467 STATHP02808 62 aa0.29□□□□□ -2.36
TRAV40-201ENST00000390467 SPRR2BP35325 72 aa0.29□□□□□ -2.36
TRAV40-201ENST00000390467 KRTAP6-2Q3LI66 62 aa0.29□□□□□ -2.36
TRAV40-201ENST00000390467 KMT2DO14686 5537 aa0.29□□□□□ -2.36
TRAV40-201ENST00000390467 MUC17Q685J3 4493 aa0.29□□□□□ -2.36
TRAV40-201ENST00000390467 CENPEQ02224 2701 aa0.28□□□□□ -2.36
TRAV40-201ENST00000390467 XIRP2A4UGR9 3374 aa0.28□□□□□ -2.36
TRAV40-201ENST00000390467 LAMA2P24043 3122 aaKnown RBP0.28□□□□□ -2.37
TRAV40-201ENST00000390467 WDFY4Q6ZS81 3184 aa0.28□□□□□ -2.37
TRAV40-201ENST00000390467 TLN1Q9Y490 2541 aaKnown RBP0.27□□□□□ -2.37
TRAV40-201ENST00000390467 SPRR2AP35326 72 aa0.27□□□□□ -2.37
TRAV40-201ENST00000390467 USP34Q70CQ2 3546 aa0.27□□□□□ -2.37
TRAV40-201ENST00000390467 SRCAPQ6ZRS2 3230 aa0.26□□□□□ -2.37
TRAV40-201ENST00000390467 COX14Q96I36 57 aa0.26□□□□□ -2.37
TRAV40-201ENST00000390467 FAT4Q6V0I7 4981 aa0.26□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms