RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 CSMD2Q7Z408 3487 aa3.85□□□□□ -1.79
LIMCH1-202ENST00000381753 KRTAP9-6A0A140TA67 174 aa3.85□□□□□ -1.79
LIMCH1-202ENST00000381753 KRTAP9-2Q9BYQ4 174 aa3.84□□□□□ -1.8
LIMCH1-202ENST00000381753 DNHD1Q96M86 4753 aa3.83□□□□□ -1.8
LIMCH1-202ENST00000381753 KRTAP4-1Q9BYQ7 146 aa3.81□□□□□ -1.8
LIMCH1-202ENST00000381753 LAMA5O15230 3695 aa3.81□□□□□ -1.8
LIMCH1-202ENST00000381753 TRRAPQ9Y4A5 3859 aa3.81□□□□□ -1.8
LIMCH1-202ENST00000381753 DNAH11Q96DT5 4516 aa3.8□□□□□ -1.8
LIMCH1-202ENST00000381753 LCE3AQ5TA76 89 aa3.8□□□□□ -1.8
LIMCH1-202ENST00000381753 KRTAP10-5P60370 271 aa3.79□□□□□ -1.8
LIMCH1-202ENST00000381753 LCE2BO14633 110 aa3.77□□□□□ -1.81
LIMCH1-202ENST00000381753 SMG1Q96Q15 3661 aaKnown RBP3.76□□□□□ -1.81
LIMCH1-202ENST00000381753 PLECQ15149 4684 aaKnown RBP3.76□□□□□ -1.81
LIMCH1-202ENST00000381753 DNAH5Q8TE73 4624 aa3.74□□□□□ -1.81
LIMCH1-202ENST00000381753 DNAH9Q9NYC9 4486 aa3.74□□□□□ -1.81
LIMCH1-202ENST00000381753 MT1FP04733 61 aa3.74□□□□□ -1.81
LIMCH1-202ENST00000381753 SPRR5A0A1B0GTR4 108 aa3.73□□□□□ -1.81
LIMCH1-202ENST00000381753 SVEP1Q4LDE5 3571 aa3.71□□□□□ -1.81
LIMCH1-202ENST00000381753 KRTAP23-1A1A580 65 aa3.68□□□□□ -1.82
LIMCH1-202ENST00000381753 BSNQ9UPA5 3926 aa3.68□□□□□ -1.82
LIMCH1-202ENST00000381753 KRTAP19-1Q8IUB9 90 aa3.67□□□□□ -1.82
LIMCH1-202ENST00000381753 KRTAP3-3Q9BYR6 98 aa3.67□□□□□ -1.82
LIMCH1-202ENST00000381753 KRTAP12-4P60329 112 aa3.64□□□□□ -1.83
LIMCH1-202ENST00000381753 DNAH10Q8IVF4 4471 aa3.64□□□□□ -1.83
LIMCH1-202ENST00000381753 RYR1P21817 5038 aa3.62□□□□□ -1.83
LIMCH1-202ENST00000381753 LCE2CQ5TA81 110 aa3.61□□□□□ -1.83
LIMCH1-202ENST00000381753 KRTAP3-2Q9BYR7 98 aa3.61□□□□□ -1.83
LIMCH1-202ENST00000381753 SPENQ96T58 3664 aaKnown RBP3.61□□□□□ -1.83
LIMCH1-202ENST00000381753 BIRC6Q9NR09 4857 aa3.61□□□□□ -1.83
LIMCH1-202ENST00000381753 AKAP9Q99996 3911 aa3.6□□□□□ -1.83
LIMCH1-202ENST00000381753 KRTAP20-1Q3LI63 56 aa3.59□□□□□ -1.83
LIMCH1-202ENST00000381753 LCE2DQ5TA82 110 aaPredicted RBP3.59□□□□□ -1.83
LIMCH1-202ENST00000381753 SPRR2GQ9BYE4 73 aa3.58□□□□□ -1.84
LIMCH1-202ENST00000381753 DYNC1H1Q14204 4646 aaKnown RBP3.56□□□□□ -1.84
LIMCH1-202ENST00000381753 KRTAP9-7A8MTY7 169 aa3.55□□□□□ -1.84
LIMCH1-202ENST00000381753 FAT2Q9NYQ8 4349 aa3.54□□□□□ -1.84
LIMCH1-202ENST00000381753 KRTAP19-5Q3LI72 72 aa3.53□□□□□ -1.84
LIMCH1-202ENST00000381753 DNAH2Q9P225 4427 aa3.53□□□□□ -1.84
LIMCH1-202ENST00000381753 RYR3Q15413 4870 aa3.52□□□□□ -1.85
LIMCH1-202ENST00000381753 HERC2O95714 4834 aa3.51□□□□□ -1.85
LIMCH1-202ENST00000381753 DNAH17Q9UFH2 4485 aa3.51□□□□□ -1.85
LIMCH1-202ENST00000381753 LRP1BQ9NZR2 4599 aa3.48□□□□□ -1.85
LIMCH1-202ENST00000381753 MT4P47944 62 aa3.47□□□□□ -1.85
LIMCH1-202ENST00000381753 LCE3BQ5TA77 95 aa3.44□□□□□ -1.86
LIMCH1-202ENST00000381753 HERC1Q15751 4861 aa3.43□□□□□ -1.86
LIMCH1-202ENST00000381753 DYNC2H1Q8NCM8 4307 aaKnown RBP3.43□□□□□ -1.86
LIMCH1-202ENST00000381753 SACSQ9NZJ4 4579 aa3.42□□□□□ -1.86
LIMCH1-202ENST00000381753 PKHD1L1Q86WI1 4243 aa3.38□□□□□ -1.87
LIMCH1-202ENST00000381753 FAT1Q14517 4588 aa3.38□□□□□ -1.87
LIMCH1-202ENST00000381753 VPS13DQ5THJ4 4388 aa3.37□□□□□ -1.87
LIMCH1-202ENST00000381753 CSMD3Q7Z407 3707 aa3.35□□□□□ -1.87
LIMCH1-202ENST00000381753 FAT3Q8TDW7 4589 aa3.35□□□□□ -1.87
LIMCH1-202ENST00000381753 PRKDCP78527 4128 aaKnown RBP3.34□□□□□ -1.87
LIMCH1-202ENST00000381753 KRTAP19-8Q3LI54 63 aa3.33□□□□□ -1.88
LIMCH1-202ENST00000381753 ANK2Q01484 3957 aa3.33□□□□□ -1.88
LIMCH1-202ENST00000381753 PCLOQ9Y6V0 5065 aa3.33□□□□□ -1.88
LIMCH1-202ENST00000381753 MT1GP13640 62 aa3.32□□□□□ -1.88
LIMCH1-202ENST00000381753 KRTAP9-8Q9BYQ0 159 aa3.32□□□□□ -1.88
LIMCH1-202ENST00000381753 VPS13CQ709C8 3753 aa3.32□□□□□ -1.88
LIMCH1-202ENST00000381753 KRTAP19-4Q3LI73 84 aa3.32□□□□□ -1.88
LIMCH1-202ENST00000381753 LCE3CQ5T5A8 94 aa3.3□□□□□ -1.88
LIMCH1-202ENST00000381753 KRTAP9-3Q9BYQ3 159 aa3.3□□□□□ -1.88
LIMCH1-202ENST00000381753 KRTAP2-3P0C7H8 128 aa3.3□□□□□ -1.88
LIMCH1-202ENST00000381753 KRTAP2-4Q9BYR9 128 aa3.3□□□□□ -1.88
LIMCH1-202ENST00000381753 VPS13BQ7Z7G8 4022 aa3.29□□□□□ -1.88
LIMCH1-202ENST00000381753 STARD9Q9P2P6 4700 aa3.28□□□□□ -1.88
LIMCH1-202ENST00000381753 DNAH3Q8TD57 4116 aa3.28□□□□□ -1.88
LIMCH1-202ENST00000381753 FRAS1Q86XX4 4008 aa3.27□□□□□ -1.89
LIMCH1-202ENST00000381753 LRP1Q07954 4544 aaKnown RBP3.27□□□□□ -1.89
LIMCH1-202ENST00000381753 APOBP04114 4563 aaKnown RBP3.25□□□□□ -1.89
LIMCH1-202ENST00000381753 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.25□□□□□ -1.89
LIMCH1-202ENST00000381753 KIAA1109Q2LD37 5005 aa3.25□□□□□ -1.89
LIMCH1-202ENST00000381753 KRTAP19-6Q3LI70 58 aa3.25□□□□□ -1.89
LIMCH1-202ENST00000381753 RYR2Q92736 4967 aa3.24□□□□□ -1.89
LIMCH1-202ENST00000381753 EPPK1P58107 5090 aaKnown RBP3.23□□□□□ -1.89
LIMCH1-202ENST00000381753 KRTAP4-8A0A0G2JLE6 195 aa3.23□□□□□ -1.89
LIMCH1-202ENST00000381753 KRTAP4-8Q9BYQ9 185 aa3.23□□□□□ -1.89
LIMCH1-202ENST00000381753 DNAH8Q96JB1 4490 aa3.23□□□□□ -1.89
LIMCH1-202ENST00000381753 MT1BP07438 61 aa3.22□□□□□ -1.89
LIMCH1-202ENST00000381753 KRTAP6-3Q3LI67 103 aa3.22□□□□□ -1.89
LIMCH1-202ENST00000381753 ZNF469Q96JG9 3925 aaPredicted RBP3.22□□□□□ -1.89
LIMCH1-202ENST00000381753 DNAH6Q9C0G6 4158 aa3.21□□□□□ -1.9
LIMCH1-202ENST00000381753 MT1XP80297 61 aa3.2□□□□□ -1.9
LIMCH1-202ENST00000381753 KRTAP19-3Q7Z4W3 81 aa3.2□□□□□ -1.9
LIMCH1-202ENST00000381753 DNAH7Q8WXX0 4024 aa3.17□□□□□ -1.9
LIMCH1-202ENST00000381753 SYNE2Q8WXH0 6885 aaKnown RBP3.16□□□□□ -1.9
LIMCH1-202ENST00000381753 PKD1P98161 4303 aa3.16□□□□□ -1.9
LIMCH1-202ENST00000381753 KRTAP2-2Q9BYT5 123 aa3.14□□□□□ -1.91
LIMCH1-202ENST00000381753 KRTAP2-1Q9BYU5 128 aa3.14□□□□□ -1.91
LIMCH1-202ENST00000381753 HSPG2P98160 4391 aa3.14□□□□□ -1.91
LIMCH1-202ENST00000381753 MYCBP2O75592 4640 aa3.12□□□□□ -1.91
LIMCH1-202ENST00000381753 LCE2AQ5TA79 106 aaPredicted RBP3.11□□□□□ -1.91
LIMCH1-202ENST00000381753 LCE1BQ5T7P3 118 aa3.11□□□□□ -1.91
LIMCH1-202ENST00000381753 KMT2AQ03164 3969 aa3.1□□□□□ -1.91
LIMCH1-202ENST00000381753 LCE1DQ5T752 114 aa3.09□□□□□ -1.92
LIMCH1-202ENST00000381753 LYSTQ99698 3801 aa3.07□□□□□ -1.92
LIMCH1-202ENST00000381753 LRP2P98164 4655 aa3.07□□□□□ -1.92
LIMCH1-202ENST00000381753 KMT2CQ8NEZ4 4911 aaKnown RBP3.06□□□□□ -1.92
LIMCH1-202ENST00000381753 LCE5AQ5TCM9 118 aa3.04□□□□□ -1.92
LIMCH1-202ENST00000381753 KRTAP4-9Q9BYQ8 210 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms