RNA–Protein interactions for RNA: ENST00000376709.8

VSX1-202, Transcript of visual system homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VSX1, Length 2,192 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-202ENST00000376709 ABCA13Q86UQ4 5058 aa10.54□□□□□ -0.72
VSX1-202ENST00000376709 SPATA8Q6RVD6 105 aa10.52□□□□□ -0.72
VSX1-202ENST00000376709 MIR22HGQ0VDD5 57 aa10.51□□□□□ -0.73
VSX1-202ENST00000376709 KTN1-AS1Q86SY8 53 aa10.48□□□□□ -0.73
VSX1-202ENST00000376709 BIRC6Q9NR09 4857 aa10.4□□□□□ -0.74
VSX1-202ENST00000376709 TPRXLQ17RH7 258 aa10.39□□□□□ -0.75
VSX1-202ENST00000376709 HERC2O95714 4834 aa10.39□□□□□ -0.75
VSX1-202ENST00000376709 LPAP08519 4548 aa10.34□□□□□ -0.75
VSX1-202ENST00000376709 LRP2P98164 4655 aa10.34□□□□□ -0.75
VSX1-202ENST00000376709 A0A1B0GU33 70 aa10.29□□□□□ -0.76
VSX1-202ENST00000376709 H0YAA0 97 aa10.28□□□□□ -0.76
VSX1-202ENST00000376709 J3QL48 77 aa10.27□□□□□ -0.77
VSX1-202ENST00000376709 S4R3F8 94 aa10.27□□□□□ -0.77
VSX1-202ENST00000376709 H1FX-AS1Q4G0G2 97 aa10.26□□□□□ -0.77
VSX1-202ENST00000376709 KRTAP3-3Q9BYR6 98 aa10.26□□□□□ -0.77
VSX1-202ENST00000376709 RBM12B-AS1Q9P1G2 102 aa10.14□□□□□ -0.79
VSX1-202ENST00000376709 ADM2Q7Z4H4 148 aa10.14□□□□□ -0.79
VSX1-202ENST00000376709 PRAC1Q96KF2 57 aa10.12□□□□□ -0.79
VSX1-202ENST00000376709 KRTAP10-6P60371 365 aaPredicted RBP10.07□□□□□ -0.8
VSX1-202ENST00000376709 PCLOQ9Y6V0 5065 aa10.06□□□□□ -0.8
VSX1-202ENST00000376709 SEC61BP60468 96 aaKnown RBP10.03□□□□□ -0.8
VSX1-202ENST00000376709 KRTAP3-2Q9BYR7 98 aa10.02□□□□□ -0.81
VSX1-202ENST00000376709 CSAG1Q6PB30 78 aa9.96□□□□□ -0.82
VSX1-202ENST00000376709 P0C880 135 aa9.94□□□□□ -0.82
VSX1-202ENST00000376709 MUC17Q685J3 4493 aa9.93□□□□□ -0.82
VSX1-202ENST00000376709 KRTAP13-4Q3LI77 160 aa9.93□□□□□ -0.82
VSX1-202ENST00000376709 HERC1Q15751 4861 aa9.93□□□□□ -0.82
VSX1-202ENST00000376709 K7ERS5 55 aa9.92□□□□□ -0.82
VSX1-202ENST00000376709 KRTAP4-1Q9BYQ7 146 aa9.88□□□□□ -0.83
VSX1-202ENST00000376709 A0A0D9SG42 100 aa9.85□□□□□ -0.83
VSX1-202ENST00000376709 HMCN2Q8NDA2 5059 aa9.82□□□□□ -0.84
VSX1-202ENST00000376709 MUC2Q02817 5179 aa9.71□□□□□ -0.85
VSX1-202ENST00000376709 M0QZ58 72 aa9.66□□□□□ -0.86
VSX1-202ENST00000376709 LINC01554Q52M75 96 aa9.65□□□□□ -0.86
VSX1-202ENST00000376709 KRTAP19-2Q3LHN2 52 aa9.63□□□□□ -0.87
VSX1-202ENST00000376709 KRTAP25-1Q3LHN0 102 aa9.6□□□□□ -0.87
VSX1-202ENST00000376709 ROMO1P60602 79 aa9.59□□□□□ -0.87
VSX1-202ENST00000376709 KRTAP12-2P59991 146 aa9.58□□□□□ -0.88
VSX1-202ENST00000376709 CRIPTQ9P021 101 aa9.57□□□□□ -0.88
VSX1-202ENST00000376709 SPINT4Q6UDR6 99 aa9.56□□□□□ -0.88
VSX1-202ENST00000376709 KRTAP12-1P59990 96 aa9.54□□□□□ -0.88
VSX1-202ENST00000376709 R4GN34 69 aa9.53□□□□□ -0.88
VSX1-202ENST00000376709 FLGP20930 4061 aaPredicted RBP9.49□□□□□ -0.89
VSX1-202ENST00000376709 UBR4Q5T4S7 5183 aa9.41□□□□□ -0.9
VSX1-202ENST00000376709 LORP23490 312 aaPredicted RBP9.4□□□□□ -0.9
VSX1-202ENST00000376709 RNF213Q63HN8 5207 aa9.4□□□□□ -0.9
VSX1-202ENST00000376709 C10orf95Q9H7T3 257 aa9.29□□□□□ -0.92
VSX1-202ENST00000376709 LCE2CQ5TA81 110 aa9.26□□□□□ -0.93
VSX1-202ENST00000376709 FAT4Q6V0I7 4981 aa9.25□□□□□ -0.93
VSX1-202ENST00000376709 MT1HP80294 61 aa9.05□□□□□ -0.96
VSX1-202ENST00000376709 M0R2T5 61 aa9.03□□□□□ -0.96
VSX1-202ENST00000376709 CAMK2N1Q7Z7J9 78 aa9.01□□□□□ -0.97
VSX1-202ENST00000376709 H3BS24 57 aa8.96□□□□□ -0.98
VSX1-202ENST00000376709 SPRR2GQ9BYE4 73 aa8.8□□□□□ -1
VSX1-202ENST00000376709 MT2AP02795 61 aa8.78□□□□□ -1
VSX1-202ENST00000376709 MT1FP04733 61 aa8.76□□□□□ -1.01
VSX1-202ENST00000376709 KRTAP9-8Q9BYQ0 159 aa8.76□□□□□ -1.01
VSX1-202ENST00000376709 KRTAP19-1Q8IUB9 90 aa8.76□□□□□ -1.01
VSX1-202ENST00000376709 KRTAP10-10P60014 251 aa8.74□□□□□ -1.01
VSX1-202ENST00000376709 PLAC4Q8WY50 150 aa8.71□□□□□ -1.02
VSX1-202ENST00000376709 KRTAP15-1Q3LI76 137 aa8.69□□□□□ -1.02
VSX1-202ENST00000376709 PP632Q6XCG6 107 aa8.63□□□□□ -1.03
VSX1-202ENST00000376709 TNP1P09430 55 aa8.62□□□□□ -1.03
VSX1-202ENST00000376709 KRTAP19-8Q3LI54 63 aa8.45□□□□□ -1.06
VSX1-202ENST00000376709 KRTAP9-3Q9BYQ3 159 aa8.42□□□□□ -1.06
VSX1-202ENST00000376709 KRTAP23-1A1A580 65 aa8.41□□□□□ -1.06
VSX1-202ENST00000376709 LCE2AQ5TA79 106 aaPredicted RBP8.39□□□□□ -1.07
VSX1-202ENST00000376709 NDUFAF8A1L188 74 aa8.38□□□□□ -1.07
VSX1-202ENST00000376709 MT1BP07438 61 aa8.35□□□□□ -1.07
VSX1-202ENST00000376709 KRTAP10-5P60370 271 aa8.22□□□□□ -1.09
VSX1-202ENST00000376709 MT1XP80297 61 aa8.22□□□□□ -1.09
VSX1-202ENST00000376709 LCE3AQ5TA76 89 aa8.17□□□□□ -1.1
VSX1-202ENST00000376709 LCE2BO14633 110 aa8.17□□□□□ -1.1
VSX1-202ENST00000376709 USH2AO75445 5202 aa8.06□□□□□ -1.12
VSX1-202ENST00000376709 PRO2289Q9P1D8 64 aa8.05□□□□□ -1.12
VSX1-202ENST00000376709 KRTAP10-12P60413 245 aa8□□□□□ -1.13
VSX1-202ENST00000376709 LUZP6Q538Z0 58 aa7.97□□□□□ -1.13
VSX1-202ENST00000376709 KRTAP10-7P60409 375 aaPredicted RBP7.96□□□□□ -1.14
VSX1-202ENST00000376709 KRTAP8-1Q8IUC2 63 aa7.96□□□□□ -1.14
VSX1-202ENST00000376709 SPRR5A0A1B0GTR4 108 aa7.91□□□□□ -1.14
VSX1-202ENST00000376709 KRTAP12-3P60328 96 aa7.81□□□□□ -1.16
VSX1-202ENST00000376709 SSPOA2VEC9 5147 aa7.71□□□□□ -1.17
VSX1-202ENST00000376709 KMT2DO14686 5537 aa7.65□□□□□ -1.18
VSX1-202ENST00000376709 KRTAP19-5Q3LI72 72 aa7.59□□□□□ -1.2
VSX1-202ENST00000376709 FSIP2Q5CZC0 6907 aa7.54□□□□□ -1.2
VSX1-202ENST00000376709 KRTAP4-8A0A0G2JLE6 195 aa7.53□□□□□ -1.2
VSX1-202ENST00000376709 KRTAP4-8Q9BYQ9 185 aa7.53□□□□□ -1.2
VSX1-202ENST00000376709 A0A0A0MQY5 61 aa7.52□□□□□ -1.21
VSX1-202ENST00000376709 KRTAP19-6Q3LI70 58 aa7.49□□□□□ -1.21
VSX1-202ENST00000376709 LCE2DQ5TA82 110 aaPredicted RBP7.43□□□□□ -1.22
VSX1-202ENST00000376709 LCE3CQ5T5A8 94 aa7.33□□□□□ -1.24
VSX1-202ENST00000376709 KRTAP19-7Q3SYF9 63 aa7.32□□□□□ -1.24
VSX1-202ENST00000376709 FCGBPQ9Y6R7 5405 aaPredicted RBP7.29□□□□□ -1.24
VSX1-202ENST00000376709 MT1EP04732 61 aa7.15□□□□□ -1.27
VSX1-202ENST00000376709 MT1LQ93083 61 aa7.09□□□□□ -1.27
VSX1-202ENST00000376709 KRTAP19-4Q3LI73 84 aa7.07□□□□□ -1.28
VSX1-202ENST00000376709 KRTAP4-7Q9BYR0 210 aa7.05□□□□□ -1.28
VSX1-202ENST00000376709 KRTAP9-2Q9BYQ4 174 aa7.02□□□□□ -1.29
VSX1-202ENST00000376709 KRTAP9-6A8MVA2 160 aa7.01□□□□□ -1.29
VSX1-202ENST00000376709 MUC12Q9UKN1 5478 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 117 ms