RNA–Protein interactions for RNA: ENST00000372330.3

MMP9-201, Transcript of matrix metallopeptidase 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MMP9, Length 2,336 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP9-201ENST00000372330 FAT1Q14517 4588 aa9.69□□□□□ -0.86
MMP9-201ENST00000372330 APOBP04114 4563 aaKnown RBP9.67□□□□□ -0.86
MMP9-201ENST00000372330 KRTAP10-4P60372 401 aaPredicted RBP9.57□□□□□ -0.88
MMP9-201ENST00000372330 KRTAP10-6P60371 365 aaPredicted RBP9.56□□□□□ -0.88
MMP9-201ENST00000372330 C10orf95Q9H7T3 257 aa9.56□□□□□ -0.88
MMP9-201ENST00000372330 PKHD1L1Q86WI1 4243 aa9.54□□□□□ -0.88
MMP9-201ENST00000372330 A0A0D9SG42 100 aa9.52□□□□□ -0.89
MMP9-201ENST00000372330 KRTAP13-4Q3LI77 160 aa9.51□□□□□ -0.89
MMP9-201ENST00000372330 A0A0A0MQY5 61 aa9.5□□□□□ -0.89
MMP9-201ENST00000372330 C9orf92A6NGG3 77 aa9.48□□□□□ -0.89
MMP9-201ENST00000372330 RYR3Q15413 4870 aa9.47□□□□□ -0.89
MMP9-201ENST00000372330 S4R3F8 94 aa9.43□□□□□ -0.9
MMP9-201ENST00000372330 KRTAP3-2Q9BYR7 98 aa9.42□□□□□ -0.9
MMP9-201ENST00000372330 KRTAP3-3Q9BYR6 98 aa9.38□□□□□ -0.91
MMP9-201ENST00000372330 HSPG2P98160 4391 aa9.36□□□□□ -0.91
MMP9-201ENST00000372330 LRP1Q07954 4544 aaKnown RBP9.35□□□□□ -0.91
MMP9-201ENST00000372330 XP32Q5T750 250 aa9.31□□□□□ -0.92
MMP9-201ENST00000372330 KRTAP12-2P59991 146 aa9.3□□□□□ -0.92
MMP9-201ENST00000372330 Q5VSD8 79 aa9.29□□□□□ -0.92
MMP9-201ENST00000372330 DMBT1Q9UGM3 2413 aaPredicted RBP9.27□□□□□ -0.93
MMP9-201ENST00000372330 RYR1P21817 5038 aa9.27□□□□□ -0.93
MMP9-201ENST00000372330 TNXBP22105 4242 aa9.26□□□□□ -0.93
MMP9-201ENST00000372330 FAT3Q8TDW7 4589 aa9.25□□□□□ -0.93
MMP9-201ENST00000372330 KRTAP17-1Q9BYP8 105 aa9.24□□□□□ -0.93
MMP9-201ENST00000372330 KRTAP12-1P59990 96 aa9.22□□□□□ -0.93
MMP9-201ENST00000372330 LUZP6Q538Z0 58 aa9.22□□□□□ -0.93
MMP9-201ENST00000372330 KRTAP10-8P60410 259 aa9.21□□□□□ -0.94
MMP9-201ENST00000372330 KIAA1109Q2LD37 5005 aa9.19□□□□□ -0.94
MMP9-201ENST00000372330 EPPK1P58107 5090 aaKnown RBP9.14□□□□□ -0.95
MMP9-201ENST00000372330 MYCBP2O75592 4640 aa9.08□□□□□ -0.96
MMP9-201ENST00000372330 M0QZ58 72 aa9.08□□□□□ -0.96
MMP9-201ENST00000372330 PLAC4Q8WY50 150 aa9.03□□□□□ -0.96
MMP9-201ENST00000372330 MT1HL1P0DM35 61 aa8.99□□□□□ -0.97
MMP9-201ENST00000372330 KRTAP4-5Q9BYR2 181 aa8.87□□□□□ -0.99
MMP9-201ENST00000372330 LPAP08519 4548 aa8.79□□□□□ -1
MMP9-201ENST00000372330 LRP2P98164 4655 aa8.77□□□□□ -1.01
MMP9-201ENST00000372330 ABCA13Q86UQ4 5058 aa8.74□□□□□ -1.01
MMP9-201ENST00000372330 PP632Q6XCG6 107 aa8.69□□□□□ -1.02
MMP9-201ENST00000372330 R4GN34 69 aa8.62□□□□□ -1.03
MMP9-201ENST00000372330 HERC2O95714 4834 aa8.58□□□□□ -1.04
MMP9-201ENST00000372330 SEC61BP60468 96 aaKnown RBP8.58□□□□□ -1.04
MMP9-201ENST00000372330 BIRC6Q9NR09 4857 aa8.54□□□□□ -1.04
MMP9-201ENST00000372330 J3QL48 77 aa8.53□□□□□ -1.04
MMP9-201ENST00000372330 MUC17Q685J3 4493 aa8.37□□□□□ -1.07
MMP9-201ENST00000372330 KRTAP4-1Q9BYQ7 146 aa8.34□□□□□ -1.08
MMP9-201ENST00000372330 SPRR5A0A1B0GTR4 108 aa8.31□□□□□ -1.08
MMP9-201ENST00000372330 CAMK2N1Q7Z7J9 78 aa8.31□□□□□ -1.08
MMP9-201ENST00000372330 PCLOQ9Y6V0 5065 aa8.26□□□□□ -1.09
MMP9-201ENST00000372330 KRTAP23-1A1A580 65 aa8.25□□□□□ -1.09
MMP9-201ENST00000372330 LORP23490 312 aaPredicted RBP8.23□□□□□ -1.09
MMP9-201ENST00000372330 PRO2289Q9P1D8 64 aa8.19□□□□□ -1.1
MMP9-201ENST00000372330 HERC1Q15751 4861 aa8.19□□□□□ -1.1
MMP9-201ENST00000372330 KRTAP19-2Q3LHN2 52 aa8.15□□□□□ -1.1
MMP9-201ENST00000372330 MUC2Q02817 5179 aa8.12□□□□□ -1.11
MMP9-201ENST00000372330 TNP1P09430 55 aa8.09□□□□□ -1.11
MMP9-201ENST00000372330 HMCN2Q8NDA2 5059 aa8.08□□□□□ -1.12
MMP9-201ENST00000372330 INE1O15225 51 aa7.99□□□□□ -1.13
MMP9-201ENST00000372330 FLGP20930 4061 aaPredicted RBP7.92□□□□□ -1.14
MMP9-201ENST00000372330 FAT4Q6V0I7 4981 aa7.75□□□□□ -1.17
MMP9-201ENST00000372330 UBR4Q5T4S7 5183 aa7.74□□□□□ -1.17
MMP9-201ENST00000372330 LCE2CQ5TA81 110 aa7.73□□□□□ -1.17
MMP9-201ENST00000372330 RNF213Q63HN8 5207 aa7.72□□□□□ -1.17
MMP9-201ENST00000372330 MT1HP80294 61 aa7.55□□□□□ -1.2
MMP9-201ENST00000372330 M0R2T5 61 aa7.53□□□□□ -1.2
MMP9-201ENST00000372330 SPRR2GQ9BYE4 73 aa7.5□□□□□ -1.21
MMP9-201ENST00000372330 LCE3AQ5TA76 89 aa7.47□□□□□ -1.21
MMP9-201ENST00000372330 KRTAP19-1Q8IUB9 90 aa7.45□□□□□ -1.22
MMP9-201ENST00000372330 KRTAP8-1Q8IUC2 63 aa7.38□□□□□ -1.23
MMP9-201ENST00000372330 MT1FP04733 61 aa7.35□□□□□ -1.23
MMP9-201ENST00000372330 MT2AP02795 61 aa7.33□□□□□ -1.24
MMP9-201ENST00000372330 KRTAP9-8Q9BYQ0 159 aa7.32□□□□□ -1.24
MMP9-201ENST00000372330 KRTAP10-10P60014 251 aa7.31□□□□□ -1.24
MMP9-201ENST00000372330 KRTAP19-8Q3LI54 63 aa7.17□□□□□ -1.26
MMP9-201ENST00000372330 KRTAP10-12P60413 245 aa7.15□□□□□ -1.27
MMP9-201ENST00000372330 KRTAP12-3P60328 96 aa7.13□□□□□ -1.27
MMP9-201ENST00000372330 MT1BP07438 61 aa7.07□□□□□ -1.28
MMP9-201ENST00000372330 KRTAP9-3Q9BYQ3 159 aa7.03□□□□□ -1.28
MMP9-201ENST00000372330 KRTAP10-5P60370 271 aa7.01□□□□□ -1.29
MMP9-201ENST00000372330 MT1XP80297 61 aa7□□□□□ -1.29
MMP9-201ENST00000372330 LCE2AQ5TA79 106 aaPredicted RBP6.96□□□□□ -1.3
MMP9-201ENST00000372330 LCE2BO14633 110 aa6.82□□□□□ -1.32
MMP9-201ENST00000372330 KRTAP10-7P60409 375 aaPredicted RBP6.79□□□□□ -1.32
MMP9-201ENST00000372330 LCE3CQ5T5A8 94 aa6.77□□□□□ -1.33
MMP9-201ENST00000372330 USH2AO75445 5202 aa6.72□□□□□ -1.33
MMP9-201ENST00000372330 KRTAP2-3P0C7H8 128 aa6.65□□□□□ -1.35
MMP9-201ENST00000372330 KRTAP2-4Q9BYR9 128 aa6.65□□□□□ -1.35
MMP9-201ENST00000372330 KRTAP2-1Q9BYU5 128 aa6.65□□□□□ -1.35
MMP9-201ENST00000372330 KRTAP19-5Q3LI72 72 aa6.54□□□□□ -1.36
MMP9-201ENST00000372330 KMT2DO14686 5537 aa6.54□□□□□ -1.36
MMP9-201ENST00000372330 KRTAP9-6A8MVA2 160 aa6.5□□□□□ -1.37
MMP9-201ENST00000372330 KRTAP4-8A0A0G2JLE6 195 aa6.44□□□□□ -1.38
MMP9-201ENST00000372330 KRTAP4-8Q9BYQ9 185 aa6.44□□□□□ -1.38
MMP9-201ENST00000372330 KRTAP19-4Q3LI73 84 aa6.37□□□□□ -1.39
MMP9-201ENST00000372330 SSPOA2VEC9 5147 aa6.36□□□□□ -1.39
MMP9-201ENST00000372330 FSIP2Q5CZC0 6907 aa6.29□□□□□ -1.4
MMP9-201ENST00000372330 KRTAP19-7Q3SYF9 63 aa6.24□□□□□ -1.41
MMP9-201ENST00000372330 KRTAP19-6Q3LI70 58 aa6.22□□□□□ -1.41
MMP9-201ENST00000372330 LCE2DQ5TA82 110 aaPredicted RBP6.19□□□□□ -1.42
MMP9-201ENST00000372330 KRTAP4-7Q9BYR0 210 aa6.13□□□□□ -1.43
MMP9-201ENST00000372330 MT1EP04732 61 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms