RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 A8MUN3 132 aa7.87□□□□□ -1.15
CLN3-203ENST00000357806 USH2AO75445 5202 aa7.87□□□□□ -1.15
CLN3-203ENST00000357806 KRTAP3-3Q9BYR6 98 aa7.87□□□□□ -1.15
CLN3-203ENST00000357806 SVIPQ8NHG7 77 aa7.85□□□□□ -1.15
CLN3-203ENST00000357806 ANAPC13Q9BS18 74 aa7.85□□□□□ -1.15
CLN3-203ENST00000357806 SMIM20Q8N5G0 67 aa7.82□□□□□ -1.16
CLN3-203ENST00000357806 NDUFC1O43677 76 aa7.79□□□□□ -1.16
CLN3-203ENST00000357806 TRAV7A0A075B6U4 112 aa7.77□□□□□ -1.17
CLN3-203ENST00000357806 SSPOA2VEC9 5147 aa7.76□□□□□ -1.17
CLN3-203ENST00000357806 SERP2Q8N6R1 65 aa7.76□□□□□ -1.17
CLN3-203ENST00000357806 KRTAP19-1Q8IUB9 90 aa7.75□□□□□ -1.17
CLN3-203ENST00000357806 COX7CP15954 63 aa7.71□□□□□ -1.18
CLN3-203ENST00000357806 DMAC1Q96GE9 116 aa7.71□□□□□ -1.18
CLN3-203ENST00000357806 H0YAA0 97 aa7.68□□□□□ -1.18
CLN3-203ENST00000357806 CCDC179H3BU77 68 aa7.66□□□□□ -1.18
CLN3-203ENST00000357806 KRTAP19-6Q3LI70 58 aa7.66□□□□□ -1.18
CLN3-203ENST00000357806 SPRR2GQ9BYE4 73 aa7.66□□□□□ -1.18
CLN3-203ENST00000357806 C20orf197Q8N268 126 aa7.64□□□□□ -1.19
CLN3-203ENST00000357806 CRIPTQ9P021 101 aa7.63□□□□□ -1.19
CLN3-203ENST00000357806 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.61□□□□□ -1.19
CLN3-203ENST00000357806 SNURFQ9Y675 71 aa7.59□□□□□ -1.19
CLN3-203ENST00000357806 Q5VV11 94 aa7.58□□□□□ -1.2
CLN3-203ENST00000357806 ADM2Q7Z4H4 148 aa7.58□□□□□ -1.2
CLN3-203ENST00000357806 FCGBPQ9Y6R7 5405 aaPredicted RBP7.58□□□□□ -1.2
CLN3-203ENST00000357806 ACYP2P14621 99 aa7.56□□□□□ -1.2
CLN3-203ENST00000357806 KRTAP19-8Q3LI54 63 aa7.56□□□□□ -1.2
CLN3-203ENST00000357806 MT1BP07438 61 aa7.54□□□□□ -1.2
CLN3-203ENST00000357806 KRTAP9-7A8MTY7 169 aa7.52□□□□□ -1.21
CLN3-203ENST00000357806 RPS28P62857 69 aaKnown RBP7.52□□□□□ -1.21
CLN3-203ENST00000357806 CYSTM1Q9H1C7 97 aa7.5□□□□□ -1.21
CLN3-203ENST00000357806 SPANXA2-OT1Q8N9U9 137 aa7.48□□□□□ -1.21
CLN3-203ENST00000357806 SPTSSBQ8NFR3 76 aa7.46□□□□□ -1.22
CLN3-203ENST00000357806 TMEM258P61165 79 aa7.45□□□□□ -1.22
CLN3-203ENST00000357806 CHKB-CPT1BH3BT56 60 aa7.44□□□□□ -1.22
CLN3-203ENST00000357806 H7BZZ5 65 aa7.44□□□□□ -1.22
CLN3-203ENST00000357806 P0C880 135 aa7.42□□□□□ -1.22
CLN3-203ENST00000357806 A6NN06 94 aa7.4□□□□□ -1.22
CLN3-203ENST00000357806 R4GN34 69 aa7.4□□□□□ -1.22
CLN3-203ENST00000357806 KRTAP3-2Q9BYR7 98 aa7.37□□□□□ -1.23
CLN3-203ENST00000357806 MACF1Q9UPN3 7388 aaKnown RBP7.37□□□□□ -1.23
CLN3-203ENST00000357806 M0QZ58 72 aa7.34□□□□□ -1.23
CLN3-203ENST00000357806 KRTAP10-5P60370 271 aa7.33□□□□□ -1.24
CLN3-203ENST00000357806 ATP5EP56381 51 aaPredicted RBP7.3□□□□□ -1.24
CLN3-203ENST00000357806 SYNE2Q8WXH0 6885 aaKnown RBP7.26□□□□□ -1.25
CLN3-203ENST00000357806 COA5Q86WW8 74 aa7.24□□□□□ -1.25
CLN3-203ENST00000357806 PLAC4Q8WY50 150 aa7.24□□□□□ -1.25
CLN3-203ENST00000357806 SERP1Q9Y6X1 66 aa7.22□□□□□ -1.25
CLN3-203ENST00000357806 LINC01554Q52M75 96 aa7.21□□□□□ -1.26
CLN3-203ENST00000357806 PRO2289Q9P1D8 64 aa7.18□□□□□ -1.26
CLN3-203ENST00000357806 KRTAP6-3Q3LI67 103 aa7.13□□□□□ -1.27
CLN3-203ENST00000357806 SMIM26A0A096LP01 95 aa7.11□□□□□ -1.27
CLN3-203ENST00000357806 MT1XP80297 61 aa7.11□□□□□ -1.27
CLN3-203ENST00000357806 SEC61GP60059 68 aa7.07□□□□□ -1.28
CLN3-203ENST00000357806 KRTAP13-4Q3LI77 160 aa7.01□□□□□ -1.29
CLN3-203ENST00000357806 PRO0628Q9UI54 55 aa6.98□□□□□ -1.29
CLN3-203ENST00000357806 KRTAP12-2P59991 146 aa6.93□□□□□ -1.3
CLN3-203ENST00000357806 KRTAP5-9P26371 169 aa6.91□□□□□ -1.3
CLN3-203ENST00000357806 A0A1B0GU33 70 aa6.9□□□□□ -1.31
CLN3-203ENST00000357806 A0A1B0GU69 56 aa6.89□□□□□ -1.31
CLN3-203ENST00000357806 SPATA8Q6RVD6 105 aa6.85□□□□□ -1.31
CLN3-203ENST00000357806 KMT2DO14686 5537 aa6.85□□□□□ -1.31
CLN3-203ENST00000357806 Q1T7F1 81 aa6.85□□□□□ -1.31
CLN3-203ENST00000357806 A0A0D9SG42 100 aa6.83□□□□□ -1.32
CLN3-203ENST00000357806 CAMK2N1Q7Z7J9 78 aa6.83□□□□□ -1.32
CLN3-203ENST00000357806 V9GYY9 64 aa6.83□□□□□ -1.32
CLN3-203ENST00000357806 MUC12Q9UKN1 5478 aa6.8□□□□□ -1.32
CLN3-203ENST00000357806 KRTAP8-1Q8IUC2 63 aa6.8□□□□□ -1.32
CLN3-203ENST00000357806 LINC01558Q9Y6Z2 57 aa6.8□□□□□ -1.32
CLN3-203ENST00000357806 NEBP20929 6669 aa6.8□□□□□ -1.32
CLN3-203ENST00000357806 KRTAP10-7P60409 375 aaPredicted RBP6.79□□□□□ -1.32
CLN3-203ENST00000357806 KRTAP10-12P60413 245 aa6.77□□□□□ -1.33
CLN3-203ENST00000357806 SPRR2FQ96RM1 72 aa6.76□□□□□ -1.33
CLN3-203ENST00000357806 PRR15LQ9BU68 103 aa6.76□□□□□ -1.33
CLN3-203ENST00000357806 KRTAP4-8A0A0G2JLE6 195 aa6.73□□□□□ -1.33
CLN3-203ENST00000357806 SPINT4Q6UDR6 99 aa6.73□□□□□ -1.33
CLN3-203ENST00000357806 KRTAP4-8Q9BYQ9 185 aa6.73□□□□□ -1.33
CLN3-203ENST00000357806 PSPHP1O15172 72 aa6.73□□□□□ -1.33
CLN3-203ENST00000357806 BRK1Q8WUW1 75 aa6.72□□□□□ -1.33
CLN3-203ENST00000357806 KRTAP12-1P59990 96 aa6.7□□□□□ -1.34
CLN3-203ENST00000357806 A8MU10 97 aa6.63□□□□□ -1.35
CLN3-203ENST00000357806 SPRR2EP22531 72 aa6.61□□□□□ -1.35
CLN3-203ENST00000357806 SPRR2BP35325 72 aa6.61□□□□□ -1.35
CLN3-203ENST00000357806 SPRR2AP35326 72 aa6.61□□□□□ -1.35
CLN3-203ENST00000357806 MDN1Q9NU22 5596 aa6.61□□□□□ -1.35
CLN3-203ENST00000357806 KRTAP20-1Q3LI63 56 aa6.59□□□□□ -1.36
CLN3-203ENST00000357806 A6NED7 52 aa6.53□□□□□ -1.36
CLN3-203ENST00000357806 UQCR11O14957 56 aa6.53□□□□□ -1.36
CLN3-203ENST00000357806 LCE1AQ5T7P2 110 aa6.53□□□□□ -1.36
CLN3-203ENST00000357806 PMAIP1Q13794 54 aa6.52□□□□□ -1.37
CLN3-203ENST00000357806 MIR22HGQ0VDD5 57 aa6.46□□□□□ -1.38
CLN3-203ENST00000357806 CDC42SE1Q9NRR8 79 aa6.44□□□□□ -1.38
CLN3-203ENST00000357806 KRTAP2-3P0C7H8 128 aa6.4□□□□□ -1.39
CLN3-203ENST00000357806 KRTAP2-4Q9BYR9 128 aa6.4□□□□□ -1.39
CLN3-203ENST00000357806 SPRR2DP22532 72 aa6.39□□□□□ -1.39
CLN3-203ENST00000357806 KTN1-AS1Q86SY8 53 aa6.37□□□□□ -1.39
CLN3-203ENST00000357806 C10orf95Q9H7T3 257 aa6.37□□□□□ -1.39
CLN3-203ENST00000357806 TNP1P09430 55 aa6.35□□□□□ -1.39
CLN3-203ENST00000357806 KRTAP19-7Q3SYF9 63 aa6.35□□□□□ -1.39
CLN3-203ENST00000357806 MT1EP04732 61 aa6.3□□□□□ -1.4
CLN3-203ENST00000357806 K7ERS5 55 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms