RNA–Protein interactions for RNA: ENST00000357475.8

SSBP3-202, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best) BASIC

Gene SSBP3, Length 1,533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-202ENST00000357475 LORP23490 312 aaPredicted RBP12.21□□□□□ -0.46
SSBP3-202ENST00000357475 NDUFC1O43677 76 aa12.19□□□□□ -0.46
SSBP3-202ENST00000357475 ACYP2P14621 99 aa12.1□□□□□ -0.47
SSBP3-202ENST00000357475 KRTAP9-8Q9BYQ0 159 aa12.09□□□□□ -0.47
SSBP3-202ENST00000357475 CSAG1Q6PB30 78 aa12.05□□□□□ -0.48
SSBP3-202ENST00000357475 MT2AP02795 61 aa12□□□□□ -0.49
SSBP3-202ENST00000357475 MT1FP04733 61 aa11.93□□□□□ -0.5
SSBP3-202ENST00000357475 PCP4P48539 62 aa11.93□□□□□ -0.5
SSBP3-202ENST00000357475 COA5Q86WW8 74 aa11.9□□□□□ -0.5
SSBP3-202ENST00000357475 CHKB-CPT1BH3BT56 60 aa11.89□□□□□ -0.51
SSBP3-202ENST00000357475 KRTAP9-2Q9BYQ4 174 aa11.86□□□□□ -0.51
SSBP3-202ENST00000357475 TMEM258P61165 79 aa11.83□□□□□ -0.52
SSBP3-202ENST00000357475 KRTAP10-10P60014 251 aa11.82□□□□□ -0.52
SSBP3-202ENST00000357475 ATP5EP56381 51 aaPredicted RBP11.78□□□□□ -0.52
SSBP3-202ENST00000357475 SPTSSBQ8NFR3 76 aa11.72□□□□□ -0.53
SSBP3-202ENST00000357475 H0YAA0 97 aa11.7□□□□□ -0.54
SSBP3-202ENST00000357475 ADM2Q7Z4H4 148 aa11.7□□□□□ -0.54
SSBP3-202ENST00000357475 KRTAP9-3Q9BYQ3 159 aa11.67□□□□□ -0.54
SSBP3-202ENST00000357475 KRTAP3-2Q9BYR7 98 aa11.62□□□□□ -0.55
SSBP3-202ENST00000357475 LCE2DQ5TA82 110 aaPredicted RBP11.6□□□□□ -0.55
SSBP3-202ENST00000357475 P0C880 135 aa11.58□□□□□ -0.56
SSBP3-202ENST00000357475 KRTAP9-6A0A140TA67 174 aa11.57□□□□□ -0.56
SSBP3-202ENST00000357475 LCE2BO14633 110 aa11.49□□□□□ -0.57
SSBP3-202ENST00000357475 KRTAP19-1Q8IUB9 90 aa11.47□□□□□ -0.57
SSBP3-202ENST00000357475 SERP1Q9Y6X1 66 aa11.47□□□□□ -0.57
SSBP3-202ENST00000357475 SPRR2GQ9BYE4 73 aa11.39□□□□□ -0.59
SSBP3-202ENST00000357475 USH2AO75445 5202 aa11.38□□□□□ -0.59
SSBP3-202ENST00000357475 CRIPTQ9P021 101 aa11.38□□□□□ -0.59
SSBP3-202ENST00000357475 FSIP2Q5CZC0 6907 aa11.28□□□□□ -0.6
SSBP3-202ENST00000357475 SEC61GP60059 68 aa11.27□□□□□ -0.61
SSBP3-202ENST00000357475 R4GN34 69 aa11.27□□□□□ -0.61
SSBP3-202ENST00000357475 M0QZ58 72 aa11.26□□□□□ -0.61
SSBP3-202ENST00000357475 A0A1B0GU69 56 aa11.24□□□□□ -0.61
SSBP3-202ENST00000357475 LINC01558Q9Y6Z2 57 aa11.21□□□□□ -0.61
SSBP3-202ENST00000357475 KRTAP19-8Q3LI54 63 aa11.19□□□□□ -0.62
SSBP3-202ENST00000357475 KRTAP13-4Q3LI77 160 aa11.18□□□□□ -0.62
SSBP3-202ENST00000357475 SSPOA2VEC9 5147 aa11.16□□□□□ -0.62
SSBP3-202ENST00000357475 MT1BP07438 61 aa11.15□□□□□ -0.62
SSBP3-202ENST00000357475 RPS28P62857 69 aaKnown RBP11.13□□□□□ -0.63
SSBP3-202ENST00000357475 CRCT1Q9UGL9 99 aa11.13□□□□□ -0.63
SSBP3-202ENST00000357475 Q5VV11 94 aa11.09□□□□□ -0.63
SSBP3-202ENST00000357475 A0A1B0GU33 70 aa11.09□□□□□ -0.63
SSBP3-202ENST00000357475 LINC01554Q52M75 96 aa11.09□□□□□ -0.63
SSBP3-202ENST00000357475 SMIM26A0A096LP01 95 aa11.07□□□□□ -0.64
SSBP3-202ENST00000357475 PRR15LQ9BU68 103 aa11.04□□□□□ -0.64
SSBP3-202ENST00000357475 SPATA8Q6RVD6 105 aa11.03□□□□□ -0.64
SSBP3-202ENST00000357475 Q1T7F1 81 aa11.01□□□□□ -0.65
SSBP3-202ENST00000357475 V9GYY9 64 aa10.95□□□□□ -0.66
SSBP3-202ENST00000357475 PSPHP1O15172 72 aa10.93□□□□□ -0.66
SSBP3-202ENST00000357475 A0A0D9SG42 100 aa10.86□□□□□ -0.67
SSBP3-202ENST00000357475 KRTAP19-6Q3LI70 58 aa10.86□□□□□ -0.67
SSBP3-202ENST00000357475 PLAC4Q8WY50 150 aa10.82□□□□□ -0.68
SSBP3-202ENST00000357475 A8MU10 97 aa10.8□□□□□ -0.68
SSBP3-202ENST00000357475 A6NN06 94 aa10.77□□□□□ -0.69
SSBP3-202ENST00000357475 UQCR11O14957 56 aa10.74□□□□□ -0.69
SSBP3-202ENST00000357475 FCGBPQ9Y6R7 5405 aaPredicted RBP10.72□□□□□ -0.69
SSBP3-202ENST00000357475 KRTAP10-5P60370 271 aa10.68□□□□□ -0.7
SSBP3-202ENST00000357475 KRTAP12-1P59990 96 aa10.67□□□□□ -0.7
SSBP3-202ENST00000357475 MT1XP80297 61 aa10.64□□□□□ -0.71
SSBP3-202ENST00000357475 KRTAP12-2P59991 146 aa10.63□□□□□ -0.71
SSBP3-202ENST00000357475 SPINT4Q6UDR6 99 aa10.63□□□□□ -0.71
SSBP3-202ENST00000357475 MIR22HGQ0VDD5 57 aa10.61□□□□□ -0.71
SSBP3-202ENST00000357475 A6NED7 52 aa10.53□□□□□ -0.72
SSBP3-202ENST00000357475 CAMK2N1Q7Z7J9 78 aa10.48□□□□□ -0.73
SSBP3-202ENST00000357475 PRO2289Q9P1D8 64 aa10.47□□□□□ -0.73
SSBP3-202ENST00000357475 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.39□□□□□ -0.75
SSBP3-202ENST00000357475 KRTAP9-7A8MTY7 169 aa10.37□□□□□ -0.75
SSBP3-202ENST00000357475 MACF1Q9UPN3 7388 aaKnown RBP10.3□□□□□ -0.76
SSBP3-202ENST00000357475 CDC42SE1Q9NRR8 79 aa10.24□□□□□ -0.77
SSBP3-202ENST00000357475 KRTAP10-7P60409 375 aaPredicted RBP10.21□□□□□ -0.78
SSBP3-202ENST00000357475 C10orf95Q9H7T3 257 aa10.15□□□□□ -0.78
SSBP3-202ENST00000357475 K7ERS5 55 aa10.14□□□□□ -0.79
SSBP3-202ENST00000357475 KMT2DO14686 5537 aa10.1□□□□□ -0.79
SSBP3-202ENST00000357475 KRTAP10-12P60413 245 aa10.07□□□□□ -0.8
SSBP3-202ENST00000357475 SYNE2Q8WXH0 6885 aaKnown RBP10.03□□□□□ -0.8
SSBP3-202ENST00000357475 KRTAP4-8A0A0G2JLE6 195 aa9.99□□□□□ -0.81
SSBP3-202ENST00000357475 KRTAP4-8Q9BYQ9 185 aa9.99□□□□□ -0.81
SSBP3-202ENST00000357475 BRK1Q8WUW1 75 aa9.98□□□□□ -0.81
SSBP3-202ENST00000357475 TNP1P09430 55 aa9.85□□□□□ -0.83
SSBP3-202ENST00000357475 KRTAP8-1Q8IUC2 63 aa9.8□□□□□ -0.84
SSBP3-202ENST00000357475 KRTAP6-3Q3LI67 103 aa9.77□□□□□ -0.85
SSBP3-202ENST00000357475 ROMO1P60602 79 aa9.71□□□□□ -0.86
SSBP3-202ENST00000357475 KRTAP5-9P26371 169 aa9.67□□□□□ -0.86
SSBP3-202ENST00000357475 KRTAP25-1Q3LHN0 102 aa9.66□□□□□ -0.86
SSBP3-202ENST00000357475 LCE3AQ5TA76 89 aa9.66□□□□□ -0.86
SSBP3-202ENST00000357475 SPRR2FQ96RM1 72 aa9.61□□□□□ -0.87
SSBP3-202ENST00000357475 MUC12Q9UKN1 5478 aa9.58□□□□□ -0.88
SSBP3-202ENST00000357475 KRTAP19-7Q3SYF9 63 aa9.51□□□□□ -0.89
SSBP3-202ENST00000357475 KRTAP19-5Q3LI72 72 aa9.47□□□□□ -0.89
SSBP3-202ENST00000357475 PMAIP1Q13794 54 aa9.39□□□□□ -0.91
SSBP3-202ENST00000357475 PRO0628Q9UI54 55 aa9.39□□□□□ -0.91
SSBP3-202ENST00000357475 MDN1Q9NU22 5596 aa9.39□□□□□ -0.91
SSBP3-202ENST00000357475 MT1EP04732 61 aa9.36□□□□□ -0.91
SSBP3-202ENST00000357475 NEBP20929 6669 aa9.35□□□□□ -0.91
SSBP3-202ENST00000357475 KRTAP23-1A1A580 65 aa9.31□□□□□ -0.92
SSBP3-202ENST00000357475 LCE1AQ5T7P2 110 aa9.28□□□□□ -0.92
SSBP3-202ENST00000357475 SPRR2EP22531 72 aa9.27□□□□□ -0.93
SSBP3-202ENST00000357475 SPRR2BP35325 72 aa9.27□□□□□ -0.93
SSBP3-202ENST00000357475 SPRR2AP35326 72 aa9.27□□□□□ -0.93
SSBP3-202ENST00000357475 KRTAP12-3P60328 96 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms