RNA–Protein interactions for RNA: ENST00000349225.2

RLIM-202, Transcript of ring finger protein, LIM domain interacting, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RLIM, Length 3,478 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RLIM-202ENST00000349225 PKHD1L1Q86WI1 4243 aa7.42□□□□□ -1.22
RLIM-202ENST00000349225 KRTAP3-3Q9BYR6 98 aa7.4□□□□□ -1.22
RLIM-202ENST00000349225 KRTAP3-2Q9BYR7 98 aa7.39□□□□□ -1.23
RLIM-202ENST00000349225 RPS29P62273 56 aaKnown RBP7.35□□□□□ -1.23
RLIM-202ENST00000349225 KRTAP12-2P59991 146 aa7.29□□□□□ -1.24
RLIM-202ENST00000349225 RYR2Q92736 4967 aa7.27□□□□□ -1.25
RLIM-202ENST00000349225 S4R3F8 94 aa7.26□□□□□ -1.25
RLIM-202ENST00000349225 FAT1Q14517 4588 aa7.25□□□□□ -1.25
RLIM-202ENST00000349225 APOBP04114 4563 aaKnown RBP7.24□□□□□ -1.25
RLIM-202ENST00000349225 HSPG2P98160 4391 aa7.24□□□□□ -1.25
RLIM-202ENST00000349225 DYNC1H1Q14204 4646 aaKnown RBP7.2□□□□□ -1.26
RLIM-202ENST00000349225 KRTAP10-8P60410 259 aa7.2□□□□□ -1.26
RLIM-202ENST00000349225 KRTAP12-1P59990 96 aa7.17□□□□□ -1.26
RLIM-202ENST00000349225 SMR3BP02814 79 aaPredicted RBP7.16□□□□□ -1.26
RLIM-202ENST00000349225 LRP1Q07954 4544 aaKnown RBP7.15□□□□□ -1.26
RLIM-202ENST00000349225 XP32Q5T750 250 aa7.14□□□□□ -1.27
RLIM-202ENST00000349225 FAT3Q8TDW7 4589 aa7.11□□□□□ -1.27
RLIM-202ENST00000349225 TNXBP22105 4242 aa7.09□□□□□ -1.27
RLIM-202ENST00000349225 KRTAP10-4P60372 401 aaPredicted RBP7.09□□□□□ -1.27
RLIM-202ENST00000349225 KMT2CQ8NEZ4 4911 aaKnown RBP7.09□□□□□ -1.27
RLIM-202ENST00000349225 MYCBP2O75592 4640 aa7.07□□□□□ -1.28
RLIM-202ENST00000349225 A0A1B0GVY2 172 aa7.05□□□□□ -1.28
RLIM-202ENST00000349225 LPAP08519 4548 aa7.03□□□□□ -1.28
RLIM-202ENST00000349225 RYR3Q15413 4870 aa7□□□□□ -1.29
RLIM-202ENST00000349225 A0A0A0MQY5 61 aa7□□□□□ -1.29
RLIM-202ENST00000349225 M0QZ58 72 aa6.83□□□□□ -1.32
RLIM-202ENST00000349225 PLAC4Q8WY50 150 aa6.83□□□□□ -1.32
RLIM-202ENST00000349225 RYR1P21817 5038 aa6.81□□□□□ -1.32
RLIM-202ENST00000349225 LUZP6Q538Z0 58 aa6.81□□□□□ -1.32
RLIM-202ENST00000349225 LRP2P98164 4655 aa6.76□□□□□ -1.33
RLIM-202ENST00000349225 KRTAP17-1Q9BYP8 105 aa6.69□□□□□ -1.34
RLIM-202ENST00000349225 LORP23490 312 aaPredicted RBP6.67□□□□□ -1.34
RLIM-202ENST00000349225 EPPK1P58107 5090 aaKnown RBP6.66□□□□□ -1.34
RLIM-202ENST00000349225 R4GN34 69 aa6.61□□□□□ -1.35
RLIM-202ENST00000349225 Q5VSD8 79 aa6.47□□□□□ -1.37
RLIM-202ENST00000349225 KIAA1109Q2LD37 5005 aa6.47□□□□□ -1.37
RLIM-202ENST00000349225 MT1HL1P0DM35 61 aa6.47□□□□□ -1.37
RLIM-202ENST00000349225 HERC2O95714 4834 aa6.44□□□□□ -1.38
RLIM-202ENST00000349225 ABCA13Q86UQ4 5058 aa6.44□□□□□ -1.38
RLIM-202ENST00000349225 MUC17Q685J3 4493 aa6.42□□□□□ -1.38
RLIM-202ENST00000349225 PP632Q6XCG6 107 aa6.42□□□□□ -1.38
RLIM-202ENST00000349225 BIRC6Q9NR09 4857 aa6.37□□□□□ -1.39
RLIM-202ENST00000349225 SPRR5A0A1B0GTR4 108 aa6.34□□□□□ -1.39
RLIM-202ENST00000349225 CAMK2N1Q7Z7J9 78 aa6.31□□□□□ -1.4
RLIM-202ENST00000349225 KRTAP4-1Q9BYQ7 146 aa6.27□□□□□ -1.41
RLIM-202ENST00000349225 KRTAP4-5Q9BYR2 181 aa6.23□□□□□ -1.41
RLIM-202ENST00000349225 KRTAP19-2Q3LHN2 52 aa6.21□□□□□ -1.42
RLIM-202ENST00000349225 MUC2Q02817 5179 aa6.16□□□□□ -1.42
RLIM-202ENST00000349225 TNP1P09430 55 aa6.12□□□□□ -1.43
RLIM-202ENST00000349225 KRTAP23-1A1A580 65 aa6.09□□□□□ -1.43
RLIM-202ENST00000349225 FLGP20930 4061 aaPredicted RBP6.08□□□□□ -1.44
RLIM-202ENST00000349225 PCLOQ9Y6V0 5065 aa6.04□□□□□ -1.44
RLIM-202ENST00000349225 SEC61BP60468 96 aaKnown RBP6.03□□□□□ -1.44
RLIM-202ENST00000349225 PRO2289Q9P1D8 64 aa6.01□□□□□ -1.45
RLIM-202ENST00000349225 HMCN2Q8NDA2 5059 aa5.99□□□□□ -1.45
RLIM-202ENST00000349225 HERC1Q15751 4861 aa5.91□□□□□ -1.46
RLIM-202ENST00000349225 LCE3AQ5TA76 89 aa5.89□□□□□ -1.47
RLIM-202ENST00000349225 INE1O15225 51 aa5.8□□□□□ -1.48
RLIM-202ENST00000349225 FAT4Q6V0I7 4981 aa5.78□□□□□ -1.48
RLIM-202ENST00000349225 KRTAP19-1Q8IUB9 90 aa5.76□□□□□ -1.49
RLIM-202ENST00000349225 SPRR2GQ9BYE4 73 aa5.73□□□□□ -1.49
RLIM-202ENST00000349225 KRTAP8-1Q8IUC2 63 aa5.67□□□□□ -1.5
RLIM-202ENST00000349225 LCE2CQ5TA81 110 aa5.63□□□□□ -1.51
RLIM-202ENST00000349225 J3QL48 77 aa5.62□□□□□ -1.51
RLIM-202ENST00000349225 UBR4Q5T4S7 5183 aa5.62□□□□□ -1.51
RLIM-202ENST00000349225 KRTAP10-12P60413 245 aa5.61□□□□□ -1.51
RLIM-202ENST00000349225 RNF213Q63HN8 5207 aa5.56□□□□□ -1.52
RLIM-202ENST00000349225 KRTAP12-3P60328 96 aa5.52□□□□□ -1.53
RLIM-202ENST00000349225 KRTAP10-5P60370 271 aa5.49□□□□□ -1.53
RLIM-202ENST00000349225 MT1FP04733 61 aa5.47□□□□□ -1.53
RLIM-202ENST00000349225 MT1XP80297 61 aa5.46□□□□□ -1.53
RLIM-202ENST00000349225 MT2AP02795 61 aa5.41□□□□□ -1.54
RLIM-202ENST00000349225 KRTAP10-7P60409 375 aaPredicted RBP5.4□□□□□ -1.55
RLIM-202ENST00000349225 MT1BP07438 61 aa5.39□□□□□ -1.55
RLIM-202ENST00000349225 KRTAP19-8Q3LI54 63 aa5.38□□□□□ -1.55
RLIM-202ENST00000349225 KRTAP10-10P60014 251 aa5.36□□□□□ -1.55
RLIM-202ENST00000349225 MT1HP80294 61 aa5.36□□□□□ -1.55
RLIM-202ENST00000349225 KRTAP9-8Q9BYQ0 159 aa5.35□□□□□ -1.55
RLIM-202ENST00000349225 M0R2T5 61 aa5.33□□□□□ -1.56
RLIM-202ENST00000349225 KRTAP9-6A8MVA2 160 aa5.26□□□□□ -1.57
RLIM-202ENST00000349225 KMT2DO14686 5537 aa5.25□□□□□ -1.57
RLIM-202ENST00000349225 LCE3CQ5T5A8 94 aa5.24□□□□□ -1.57
RLIM-202ENST00000349225 KRTAP19-5Q3LI72 72 aa5.2□□□□□ -1.58
RLIM-202ENST00000349225 LCE2AQ5TA79 106 aaPredicted RBP5.2□□□□□ -1.58
RLIM-202ENST00000349225 KRTAP2-3P0C7H8 128 aa5.12□□□□□ -1.59
RLIM-202ENST00000349225 KRTAP2-4Q9BYR9 128 aa5.12□□□□□ -1.59
RLIM-202ENST00000349225 KRTAP2-1Q9BYU5 128 aa5.12□□□□□ -1.59
RLIM-202ENST00000349225 KRTAP9-3Q9BYQ3 159 aa5.08□□□□□ -1.6
RLIM-202ENST00000349225 USH2AO75445 5202 aa5.04□□□□□ -1.6
RLIM-202ENST00000349225 KRTAP4-7Q9BYR0 210 aa5.04□□□□□ -1.6
RLIM-202ENST00000349225 KRTAP4-8A0A0G2JLE6 195 aa5□□□□□ -1.61
RLIM-202ENST00000349225 KRTAP4-8Q9BYQ9 185 aa5□□□□□ -1.61
RLIM-202ENST00000349225 KRTAP19-7Q3SYF9 63 aa4.88□□□□□ -1.63
RLIM-202ENST00000349225 LCE2BO14633 110 aa4.86□□□□□ -1.63
RLIM-202ENST00000349225 MT1LQ93083 61 aa4.73□□□□□ -1.65
RLIM-202ENST00000349225 SSPOA2VEC9 5147 aa4.72□□□□□ -1.65
RLIM-202ENST00000349225 LOC100996750A0A140TA64 210 aa4.67□□□□□ -1.66
RLIM-202ENST00000349225 LCE2DQ5TA82 110 aaPredicted RBP4.67□□□□□ -1.66
RLIM-202ENST00000349225 MT1EP04732 61 aa4.65□□□□□ -1.66
RLIM-202ENST00000349225 KRTAP12-4P60329 112 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms