RNA–Protein interactions for RNA: ENST00000348495.10

SSBP4-202, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SSBP4, Length 1,721 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-202ENST00000348495 LCA10Q71F78 164 aa13.18□□□□□ -0.3
SSBP4-202ENST00000348495 ATP5EP56381 51 aaPredicted RBP13.16□□□□□ -0.3
SSBP4-202ENST00000348495 LCE2AQ5TA79 106 aaPredicted RBP13.14□□□□□ -0.31
SSBP4-202ENST00000348495 KRTAP3-3Q9BYR6 98 aa13.13□□□□□ -0.31
SSBP4-202ENST00000348495 M0R2T5 61 aa13.05□□□□□ -0.32
SSBP4-202ENST00000348495 COA5Q86WW8 74 aa13.05□□□□□ -0.32
SSBP4-202ENST00000348495 CHKB-CPT1BH3BT56 60 aa12.98□□□□□ -0.33
SSBP4-202ENST00000348495 CSAG1Q6PB30 78 aa12.98□□□□□ -0.33
SSBP4-202ENST00000348495 RPS28P62857 69 aaKnown RBP12.92□□□□□ -0.34
SSBP4-202ENST00000348495 KRTAP10-6P60371 365 aaPredicted RBP12.87□□□□□ -0.35
SSBP4-202ENST00000348495 SPTSSBQ8NFR3 76 aa12.85□□□□□ -0.35
SSBP4-202ENST00000348495 LORP23490 312 aaPredicted RBP12.83□□□□□ -0.36
SSBP4-202ENST00000348495 SERP1Q9Y6X1 66 aa12.81□□□□□ -0.36
SSBP4-202ENST00000348495 KRTAP9-8Q9BYQ0 159 aa12.75□□□□□ -0.37
SSBP4-202ENST00000348495 H0YAA0 97 aa12.69□□□□□ -0.38
SSBP4-202ENST00000348495 MT2AP02795 61 aa12.66□□□□□ -0.38
SSBP4-202ENST00000348495 MT1FP04733 61 aa12.57□□□□□ -0.4
SSBP4-202ENST00000348495 ADM2Q7Z4H4 148 aa12.57□□□□□ -0.4
SSBP4-202ENST00000348495 KRTAP3-2Q9BYR7 98 aa12.55□□□□□ -0.4
SSBP4-202ENST00000348495 KRTAP9-2Q9BYQ4 174 aa12.54□□□□□ -0.4
SSBP4-202ENST00000348495 KRTAP10-10P60014 251 aa12.48□□□□□ -0.41
SSBP4-202ENST00000348495 P0C880 135 aa12.45□□□□□ -0.42
SSBP4-202ENST00000348495 LINC01558Q9Y6Z2 57 aa12.4□□□□□ -0.42
SSBP4-202ENST00000348495 SMIM26A0A096LP01 95 aa12.4□□□□□ -0.43
SSBP4-202ENST00000348495 SEC61GP60059 68 aa12.37□□□□□ -0.43
SSBP4-202ENST00000348495 A0A1B0GU69 56 aa12.33□□□□□ -0.44
SSBP4-202ENST00000348495 KRTAP9-3Q9BYQ3 159 aa12.31□□□□□ -0.44
SSBP4-202ENST00000348495 Q1T7F1 81 aa12.3□□□□□ -0.44
SSBP4-202ENST00000348495 CRIPTQ9P021 101 aa12.29□□□□□ -0.44
SSBP4-202ENST00000348495 V9GYY9 64 aa12.25□□□□□ -0.45
SSBP4-202ENST00000348495 PRR15LQ9BU68 103 aa12.22□□□□□ -0.45
SSBP4-202ENST00000348495 LCE2DQ5TA82 110 aaPredicted RBP12.2□□□□□ -0.46
SSBP4-202ENST00000348495 KRTAP19-1Q8IUB9 90 aa12.19□□□□□ -0.46
SSBP4-202ENST00000348495 SPRR2GQ9BYE4 73 aa12.17□□□□□ -0.46
SSBP4-202ENST00000348495 R4GN34 69 aa12.14□□□□□ -0.47
SSBP4-202ENST00000348495 A0A1B0GU33 70 aa12.12□□□□□ -0.47
SSBP4-202ENST00000348495 M0QZ58 72 aa12.11□□□□□ -0.47
SSBP4-202ENST00000348495 PSPHP1O15172 72 aa12.07□□□□□ -0.48
SSBP4-202ENST00000348495 KRTAP13-4Q3LI77 160 aa12.06□□□□□ -0.48
SSBP4-202ENST00000348495 KRTAP9-6A0A140TA67 174 aa12.06□□□□□ -0.48
SSBP4-202ENST00000348495 PRO0628Q9UI54 55 aa12.04□□□□□ -0.48
SSBP4-202ENST00000348495 LCE2BO14633 110 aa12.03□□□□□ -0.48
SSBP4-202ENST00000348495 FSIP2Q5CZC0 6907 aa12.03□□□□□ -0.48
SSBP4-202ENST00000348495 Q5VV11 94 aa12□□□□□ -0.49
SSBP4-202ENST00000348495 SPATA8Q6RVD6 105 aa11.94□□□□□ -0.5
SSBP4-202ENST00000348495 KRTAP19-8Q3LI54 63 aa11.94□□□□□ -0.5
SSBP4-202ENST00000348495 UQCR11O14957 56 aa11.87□□□□□ -0.51
SSBP4-202ENST00000348495 LINC01554Q52M75 96 aa11.86□□□□□ -0.51
SSBP4-202ENST00000348495 CRCT1Q9UGL9 99 aa11.86□□□□□ -0.51
SSBP4-202ENST00000348495 MT1BP07438 61 aa11.81□□□□□ -0.52
SSBP4-202ENST00000348495 USH2AO75445 5202 aa11.76□□□□□ -0.53
SSBP4-202ENST00000348495 A0A0D9SG42 100 aa11.72□□□□□ -0.53
SSBP4-202ENST00000348495 A6NN06 94 aa11.72□□□□□ -0.53
SSBP4-202ENST00000348495 A8MU10 97 aa11.71□□□□□ -0.54
SSBP4-202ENST00000348495 MIR22HGQ0VDD5 57 aa11.7□□□□□ -0.54
SSBP4-202ENST00000348495 A6NED7 52 aa11.69□□□□□ -0.54
SSBP4-202ENST00000348495 BRK1Q8WUW1 75 aa11.67□□□□□ -0.54
SSBP4-202ENST00000348495 PLAC4Q8WY50 150 aa11.6□□□□□ -0.55
SSBP4-202ENST00000348495 KRTAP12-1P59990 96 aa11.57□□□□□ -0.56
SSBP4-202ENST00000348495 KRTAP12-2P59991 146 aa11.51□□□□□ -0.57
SSBP4-202ENST00000348495 SPINT4Q6UDR6 99 aa11.48□□□□□ -0.57
SSBP4-202ENST00000348495 SSPOA2VEC9 5147 aa11.46□□□□□ -0.58
SSBP4-202ENST00000348495 CDC42SE1Q9NRR8 79 aa11.44□□□□□ -0.58
SSBP4-202ENST00000348495 KRTAP19-6Q3LI70 58 aa11.43□□□□□ -0.58
SSBP4-202ENST00000348495 MT1XP80297 61 aa11.32□□□□□ -0.6
SSBP4-202ENST00000348495 KRTAP10-5P60370 271 aa11.3□□□□□ -0.6
SSBP4-202ENST00000348495 CAMK2N1Q7Z7J9 78 aa11.3□□□□□ -0.6
SSBP4-202ENST00000348495 PMAIP1Q13794 54 aa11.26□□□□□ -0.61
SSBP4-202ENST00000348495 K7ERS5 55 aa11.22□□□□□ -0.61
SSBP4-202ENST00000348495 PRO2289Q9P1D8 64 aa11.21□□□□□ -0.61
SSBP4-202ENST00000348495 FCGBPQ9Y6R7 5405 aaPredicted RBP11.12□□□□□ -0.63
SSBP4-202ENST00000348495 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.05□□□□□ -0.64
SSBP4-202ENST00000348495 KTN1-AS1Q86SY8 53 aa11□□□□□ -0.65
SSBP4-202ENST00000348495 C10orf95Q9H7T3 257 aa10.98□□□□□ -0.65
SSBP4-202ENST00000348495 KRTAP9-7A8MTY7 169 aa10.87□□□□□ -0.67
SSBP4-202ENST00000348495 KRTAP10-7P60409 375 aaPredicted RBP10.82□□□□□ -0.68
SSBP4-202ENST00000348495 MACF1Q9UPN3 7388 aaKnown RBP10.81□□□□□ -0.68
SSBP4-202ENST00000348495 KRTAP10-12P60413 245 aa10.75□□□□□ -0.69
SSBP4-202ENST00000348495 ROMO1P60602 79 aa10.72□□□□□ -0.69
SSBP4-202ENST00000348495 TNP1P09430 55 aa10.69□□□□□ -0.7
SSBP4-202ENST00000348495 SYNE2Q8WXH0 6885 aaKnown RBP10.68□□□□□ -0.7
SSBP4-202ENST00000348495 KRTAP25-1Q3LHN0 102 aa10.6□□□□□ -0.71
SSBP4-202ENST00000348495 KRTAP4-8A0A0G2JLE6 195 aa10.52□□□□□ -0.73
SSBP4-202ENST00000348495 KRTAP4-8Q9BYQ9 185 aa10.52□□□□□ -0.73
SSBP4-202ENST00000348495 KMT2DO14686 5537 aa10.43□□□□□ -0.74
SSBP4-202ENST00000348495 LCE3AQ5TA76 89 aa10.36□□□□□ -0.75
SSBP4-202ENST00000348495 KRTAP6-3Q3LI67 103 aa10.34□□□□□ -0.75
SSBP4-202ENST00000348495 KRTAP8-1Q8IUC2 63 aa10.33□□□□□ -0.76
SSBP4-202ENST00000348495 KRTAP23-1A1A580 65 aa10.27□□□□□ -0.76
SSBP4-202ENST00000348495 PRAC1Q96KF2 57 aa10.17□□□□□ -0.78
SSBP4-202ENST00000348495 KRTAP5-9P26371 169 aa10.16□□□□□ -0.78
SSBP4-202ENST00000348495 PP632Q6XCG6 107 aa10.12□□□□□ -0.79
SSBP4-202ENST00000348495 KRTAP19-7Q3SYF9 63 aa10.11□□□□□ -0.79
SSBP4-202ENST00000348495 KRTAP19-5Q3LI72 72 aa10.09□□□□□ -0.79
SSBP4-202ENST00000348495 SPRR2FQ96RM1 72 aa10.05□□□□□ -0.8
SSBP4-202ENST00000348495 MUC12Q9UKN1 5478 aa9.99□□□□□ -0.81
SSBP4-202ENST00000348495 KRTAP12-3P60328 96 aa9.96□□□□□ -0.82
SSBP4-202ENST00000348495 MT1EP04732 61 aa9.95□□□□□ -0.82
SSBP4-202ENST00000348495 NEBP20929 6669 aa9.94□□□□□ -0.82
SSBP4-202ENST00000348495 MDN1Q9NU22 5596 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 328.7 ms