RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 A8MUN3 132 aa9.29□□□□□ -0.92
CHMP4A-201ENST00000347519 SEC61GP60059 68 aa9.28□□□□□ -0.92
CHMP4A-201ENST00000347519 S4R3F8 94 aa9.24□□□□□ -0.93
CHMP4A-201ENST00000347519 LCA10Q71F78 164 aa9.23□□□□□ -0.93
CHMP4A-201ENST00000347519 KRTAP3-3Q9BYR6 98 aa9.2□□□□□ -0.94
CHMP4A-201ENST00000347519 PRO0628Q9UI54 55 aa9.2□□□□□ -0.94
CHMP4A-201ENST00000347519 ACYP2P14621 99 aa9.19□□□□□ -0.94
CHMP4A-201ENST00000347519 M0R2T5 61 aa9.18□□□□□ -0.94
CHMP4A-201ENST00000347519 V9GYY9 64 aa9.16□□□□□ -0.94
CHMP4A-201ENST00000347519 LCE2DQ5TA82 110 aaPredicted RBP9.12□□□□□ -0.95
CHMP4A-201ENST00000347519 TMEM258P61165 79 aa9.11□□□□□ -0.95
CHMP4A-201ENST00000347519 KRTAP10-6P60371 365 aaPredicted RBP9.08□□□□□ -0.96
CHMP4A-201ENST00000347519 COA5Q86WW8 74 aa9.07□□□□□ -0.96
CHMP4A-201ENST00000347519 ATP5EP56381 51 aaPredicted RBP9.05□□□□□ -0.96
CHMP4A-201ENST00000347519 CSAG1Q6PB30 78 aa9.05□□□□□ -0.96
CHMP4A-201ENST00000347519 LORP23490 312 aaPredicted RBP9.04□□□□□ -0.96
CHMP4A-201ENST00000347519 FSIP2Q5CZC0 6907 aa9.03□□□□□ -0.96
CHMP4A-201ENST00000347519 CHKB-CPT1BH3BT56 60 aa9.02□□□□□ -0.97
CHMP4A-201ENST00000347519 KRTAP9-8Q9BYQ0 159 aa8.99□□□□□ -0.97
CHMP4A-201ENST00000347519 CRCT1Q9UGL9 99 aa8.98□□□□□ -0.97
CHMP4A-201ENST00000347519 MT2AP02795 61 aa8.93□□□□□ -0.98
CHMP4A-201ENST00000347519 SPTSSBQ8NFR3 76 aa8.88□□□□□ -0.99
CHMP4A-201ENST00000347519 MT1FP04733 61 aa8.87□□□□□ -0.99
CHMP4A-201ENST00000347519 SERP1Q9Y6X1 66 aa8.84□□□□□ -0.99
CHMP4A-201ENST00000347519 H0YAA0 97 aa8.8□□□□□ -1
CHMP4A-201ENST00000347519 ADM2Q7Z4H4 148 aa8.8□□□□□ -1
CHMP4A-201ENST00000347519 KRTAP10-10P60014 251 aa8.79□□□□□ -1
CHMP4A-201ENST00000347519 KRTAP3-2Q9BYR7 98 aa8.79□□□□□ -1
CHMP4A-201ENST00000347519 SMIM26A0A096LP01 95 aa8.74□□□□□ -1.01
CHMP4A-201ENST00000347519 P0C880 135 aa8.73□□□□□ -1.01
CHMP4A-201ENST00000347519 PMAIP1Q13794 54 aa8.7□□□□□ -1.02
CHMP4A-201ENST00000347519 KRTAP9-3Q9BYQ3 159 aa8.68□□□□□ -1.02
CHMP4A-201ENST00000347519 BRK1Q8WUW1 75 aa8.59□□□□□ -1.03
CHMP4A-201ENST00000347519 LINC01558Q9Y6Z2 57 aa8.59□□□□□ -1.03
CHMP4A-201ENST00000347519 KRTAP19-1Q8IUB9 90 aa8.58□□□□□ -1.04
CHMP4A-201ENST00000347519 A0A1B0GU69 56 aa8.55□□□□□ -1.04
CHMP4A-201ENST00000347519 CRIPTQ9P021 101 aa8.53□□□□□ -1.04
CHMP4A-201ENST00000347519 LCE2BO14633 110 aa8.52□□□□□ -1.05
CHMP4A-201ENST00000347519 SPRR2GQ9BYE4 73 aa8.51□□□□□ -1.05
CHMP4A-201ENST00000347519 Q1T7F1 81 aa8.48□□□□□ -1.05
CHMP4A-201ENST00000347519 M0QZ58 72 aa8.47□□□□□ -1.05
CHMP4A-201ENST00000347519 KRTAP13-4Q3LI77 160 aa8.46□□□□□ -1.06
CHMP4A-201ENST00000347519 R4GN34 69 aa8.46□□□□□ -1.06
CHMP4A-201ENST00000347519 USH2AO75445 5202 aa8.45□□□□□ -1.06
CHMP4A-201ENST00000347519 PRR15LQ9BU68 103 aa8.44□□□□□ -1.06
CHMP4A-201ENST00000347519 A0A1B0GU33 70 aa8.42□□□□□ -1.06
CHMP4A-201ENST00000347519 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.39□□□□□ -1.07
CHMP4A-201ENST00000347519 PSPHP1O15172 72 aa8.38□□□□□ -1.07
CHMP4A-201ENST00000347519 KRTAP19-8Q3LI54 63 aa8.37□□□□□ -1.07
CHMP4A-201ENST00000347519 SSPOA2VEC9 5147 aa8.37□□□□□ -1.07
CHMP4A-201ENST00000347519 KRTAP9-7A8MTY7 169 aa8.35□□□□□ -1.07
CHMP4A-201ENST00000347519 SPATA8Q6RVD6 105 aa8.35□□□□□ -1.07
CHMP4A-201ENST00000347519 KTN1-AS1Q86SY8 53 aa8.34□□□□□ -1.07
CHMP4A-201ENST00000347519 MT1BP07438 61 aa8.33□□□□□ -1.08
CHMP4A-201ENST00000347519 LINC01554Q52M75 96 aa8.32□□□□□ -1.08
CHMP4A-201ENST00000347519 Q5VV11 94 aa8.32□□□□□ -1.08
CHMP4A-201ENST00000347519 FCGBPQ9Y6R7 5405 aaPredicted RBP8.24□□□□□ -1.09
CHMP4A-201ENST00000347519 H3BS24 57 aa8.23□□□□□ -1.09
CHMP4A-201ENST00000347519 A0A0D9SG42 100 aa8.22□□□□□ -1.09
CHMP4A-201ENST00000347519 A8MU10 97 aa8.2□□□□□ -1.1
CHMP4A-201ENST00000347519 UQCR11O14957 56 aa8.2□□□□□ -1.1
CHMP4A-201ENST00000347519 A6NN06 94 aa8.11□□□□□ -1.11
CHMP4A-201ENST00000347519 MIR22HGQ0VDD5 57 aa8.1□□□□□ -1.11
CHMP4A-201ENST00000347519 PLAC4Q8WY50 150 aa8.1□□□□□ -1.11
CHMP4A-201ENST00000347519 A6NED7 52 aa8.09□□□□□ -1.12
CHMP4A-201ENST00000347519 KRTAP12-1P59990 96 aa8.08□□□□□ -1.12
CHMP4A-201ENST00000347519 KRTAP12-2P59991 146 aa8.05□□□□□ -1.12
CHMP4A-201ENST00000347519 KRTAP19-6Q3LI70 58 aa8.05□□□□□ -1.12
CHMP4A-201ENST00000347519 SPINT4Q6UDR6 99 aa8.03□□□□□ -1.12
CHMP4A-201ENST00000347519 MACF1Q9UPN3 7388 aaKnown RBP8.01□□□□□ -1.13
CHMP4A-201ENST00000347519 SYNE2Q8WXH0 6885 aaKnown RBP7.98□□□□□ -1.13
CHMP4A-201ENST00000347519 MT1XP80297 61 aa7.96□□□□□ -1.14
CHMP4A-201ENST00000347519 KRTAP10-5P60370 271 aa7.95□□□□□ -1.14
CHMP4A-201ENST00000347519 CDC42SE1Q9NRR8 79 aa7.89□□□□□ -1.15
CHMP4A-201ENST00000347519 CAMK2N1Q7Z7J9 78 aa7.87□□□□□ -1.15
CHMP4A-201ENST00000347519 PRO2289Q9P1D8 64 aa7.79□□□□□ -1.16
CHMP4A-201ENST00000347519 KRTAP6-3Q3LI67 103 aa7.74□□□□□ -1.17
CHMP4A-201ENST00000347519 K7ERS5 55 aa7.72□□□□□ -1.17
CHMP4A-201ENST00000347519 C10orf95Q9H7T3 257 aa7.69□□□□□ -1.18
CHMP4A-201ENST00000347519 KRTAP10-7P60409 375 aaPredicted RBP7.63□□□□□ -1.19
CHMP4A-201ENST00000347519 KRTAP10-12P60413 245 aa7.53□□□□□ -1.2
CHMP4A-201ENST00000347519 KMT2DO14686 5537 aa7.5□□□□□ -1.21
CHMP4A-201ENST00000347519 A0A0A0MQY5 61 aa7.5□□□□□ -1.21
CHMP4A-201ENST00000347519 NEBP20929 6669 aa7.49□□□□□ -1.21
CHMP4A-201ENST00000347519 KRTAP4-8A0A0G2JLE6 195 aa7.45□□□□□ -1.22
CHMP4A-201ENST00000347519 KRTAP4-8Q9BYQ9 185 aa7.45□□□□□ -1.22
CHMP4A-201ENST00000347519 MUC12Q9UKN1 5478 aa7.44□□□□□ -1.22
CHMP4A-201ENST00000347519 TNP1P09430 55 aa7.43□□□□□ -1.22
CHMP4A-201ENST00000347519 PRAC1Q96KF2 57 aa7.43□□□□□ -1.22
CHMP4A-201ENST00000347519 ROMO1P60602 79 aa7.42□□□□□ -1.22
CHMP4A-201ENST00000347519 KRTAP5-9P26371 169 aa7.33□□□□□ -1.24
CHMP4A-201ENST00000347519 KRTAP25-1Q3LHN0 102 aa7.33□□□□□ -1.24
CHMP4A-201ENST00000347519 KRTAP20-1Q3LI63 56 aa7.29□□□□□ -1.24
CHMP4A-201ENST00000347519 LCE3AQ5TA76 89 aa7.27□□□□□ -1.25
CHMP4A-201ENST00000347519 KRTAP8-1Q8IUC2 63 aa7.26□□□□□ -1.25
CHMP4A-201ENST00000347519 MDN1Q9NU22 5596 aa7.19□□□□□ -1.26
CHMP4A-201ENST00000347519 KRTAP19-7Q3SYF9 63 aa7.11□□□□□ -1.27
CHMP4A-201ENST00000347519 KRTAP19-5Q3LI72 72 aa7.1□□□□□ -1.27
CHMP4A-201ENST00000347519 SPRR2FQ96RM1 72 aa7.09□□□□□ -1.27
CHMP4A-201ENST00000347519 KRTAP23-1A1A580 65 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms