RNA–Protein interactions for RNA: ENST00000336873.9

HPS4-201, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HPS4, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-201ENST00000336873 FAT3Q8TDW7 4589 aa4.42□□□□□ -1.7
HPS4-201ENST00000336873 COX6B2Q6YFQ2 88 aa4.39□□□□□ -1.71
HPS4-201ENST00000336873 H1FX-AS1Q4G0G2 97 aa4.38□□□□□ -1.71
HPS4-201ENST00000336873 P0C880 135 aa4.37□□□□□ -1.71
HPS4-201ENST00000336873 S4R3F8 94 aa4.37□□□□□ -1.71
HPS4-201ENST00000336873 A0A1B0GVY2 172 aa4.36□□□□□ -1.71
HPS4-201ENST00000336873 H0YAA0 97 aa4.36□□□□□ -1.71
HPS4-201ENST00000336873 DYNC1H1Q14204 4646 aaKnown RBP4.35□□□□□ -1.71
HPS4-201ENST00000336873 RPS29P62273 56 aaKnown RBP4.35□□□□□ -1.71
HPS4-201ENST00000336873 LRP1Q07954 4544 aaKnown RBP4.35□□□□□ -1.71
HPS4-201ENST00000336873 TNXBP22105 4242 aa4.35□□□□□ -1.71
HPS4-201ENST00000336873 KRTAP3-1Q9BYR8 98 aa4.32□□□□□ -1.72
HPS4-201ENST00000336873 RPL37P61927 97 aaKnown RBP4.3□□□□□ -1.72
HPS4-201ENST00000336873 C10orf95Q9H7T3 257 aa4.3□□□□□ -1.72
HPS4-201ENST00000336873 KMT2CQ8NEZ4 4911 aaKnown RBP4.3□□□□□ -1.72
HPS4-201ENST00000336873 KIAA1109Q2LD37 5005 aa4.28□□□□□ -1.72
HPS4-201ENST00000336873 XP32Q5T750 250 aa4.28□□□□□ -1.72
HPS4-201ENST00000336873 KRTAP10-8P60410 259 aa4.28□□□□□ -1.72
HPS4-201ENST00000336873 R4GN34 69 aa4.26□□□□□ -1.73
HPS4-201ENST00000336873 M0QZ58 72 aa4.25□□□□□ -1.73
HPS4-201ENST00000336873 RYR1P21817 5038 aa4.24□□□□□ -1.73
HPS4-201ENST00000336873 SEC61BP60468 96 aaKnown RBP4.2□□□□□ -1.74
HPS4-201ENST00000336873 CAMK2N1Q7Z7J9 78 aa4.19□□□□□ -1.74
HPS4-201ENST00000336873 KRTAP13-4Q3LI77 160 aa4.17□□□□□ -1.74
HPS4-201ENST00000336873 RYR3Q15413 4870 aa4.16□□□□□ -1.74
HPS4-201ENST00000336873 RYR2Q92736 4967 aa4.16□□□□□ -1.74
HPS4-201ENST00000336873 ABCA13Q86UQ4 5058 aa4.16□□□□□ -1.74
HPS4-201ENST00000336873 M0R2T5 61 aa4.15□□□□□ -1.75
HPS4-201ENST00000336873 KRTAP10-4P60372 401 aaPredicted RBP4.15□□□□□ -1.75
HPS4-201ENST00000336873 LRP2P98164 4655 aa4.13□□□□□ -1.75
HPS4-201ENST00000336873 KRTAP4-5Q9BYR2 181 aa4.13□□□□□ -1.75
HPS4-201ENST00000336873 TPRXLQ17RH7 258 aa4.1□□□□□ -1.75
HPS4-201ENST00000336873 KRTAP12-2P59991 146 aa4.1□□□□□ -1.75
HPS4-201ENST00000336873 KRTAP10-6P60371 365 aaPredicted RBP4.09□□□□□ -1.76
HPS4-201ENST00000336873 KRTAP3-3Q9BYR6 98 aa4.06□□□□□ -1.76
HPS4-201ENST00000336873 EPPK1P58107 5090 aaKnown RBP4.06□□□□□ -1.76
HPS4-201ENST00000336873 KRTAP15-1Q3LI76 137 aa4.05□□□□□ -1.76
HPS4-201ENST00000336873 KRTAP17-1Q9BYP8 105 aa4.05□□□□□ -1.76
HPS4-201ENST00000336873 MT1HL1P0DM35 61 aa4.04□□□□□ -1.76
HPS4-201ENST00000336873 MUC2Q02817 5179 aa4.02□□□□□ -1.77
HPS4-201ENST00000336873 KRTAP3-2Q9BYR7 98 aa4□□□□□ -1.77
HPS4-201ENST00000336873 PLAC4Q8WY50 150 aa3.99□□□□□ -1.77
HPS4-201ENST00000336873 KRTAP12-1P59990 96 aa3.98□□□□□ -1.77
HPS4-201ENST00000336873 MUC17Q685J3 4493 aa3.93□□□□□ -1.78
HPS4-201ENST00000336873 LORP23490 312 aaPredicted RBP3.93□□□□□ -1.78
HPS4-201ENST00000336873 PCLOQ9Y6V0 5065 aa3.88□□□□□ -1.79
HPS4-201ENST00000336873 HERC2O95714 4834 aa3.87□□□□□ -1.79
HPS4-201ENST00000336873 KRTAP4-1Q9BYQ7 146 aa3.84□□□□□ -1.79
HPS4-201ENST00000336873 RNF213Q63HN8 5207 aa3.83□□□□□ -1.8
HPS4-201ENST00000336873 FAT4Q6V0I7 4981 aa3.83□□□□□ -1.8
HPS4-201ENST00000336873 FLGP20930 4061 aaPredicted RBP3.8□□□□□ -1.8
HPS4-201ENST00000336873 KRTAP10-10P60014 251 aa3.78□□□□□ -1.8
HPS4-201ENST00000336873 TNP1P09430 55 aa3.78□□□□□ -1.8
HPS4-201ENST00000336873 HERC1Q15751 4861 aa3.77□□□□□ -1.81
HPS4-201ENST00000336873 PP632Q6XCG6 107 aa3.75□□□□□ -1.81
HPS4-201ENST00000336873 FSIP2Q5CZC0 6907 aa3.69□□□□□ -1.82
HPS4-201ENST00000336873 UBR4Q5T4S7 5183 aa3.66□□□□□ -1.82
HPS4-201ENST00000336873 BIRC6Q9NR09 4857 aa3.65□□□□□ -1.83
HPS4-201ENST00000336873 PRO2289Q9P1D8 64 aa3.63□□□□□ -1.83
HPS4-201ENST00000336873 HMCN2Q8NDA2 5059 aa3.57□□□□□ -1.84
HPS4-201ENST00000336873 KRTAP19-2Q3LHN2 52 aa3.55□□□□□ -1.84
HPS4-201ENST00000336873 LCE2DQ5TA82 110 aaPredicted RBP3.51□□□□□ -1.85
HPS4-201ENST00000336873 OBSCNQ5VST9 7968 aa3.51□□□□□ -1.85
HPS4-201ENST00000336873 USH2AO75445 5202 aa3.48□□□□□ -1.85
HPS4-201ENST00000336873 INE1O15225 51 aa3.47□□□□□ -1.85
HPS4-201ENST00000336873 LCE3AQ5TA76 89 aa3.47□□□□□ -1.85
HPS4-201ENST00000336873 MT1HP80294 61 aa3.42□□□□□ -1.86
HPS4-201ENST00000336873 MT1FP04733 61 aa3.42□□□□□ -1.86
HPS4-201ENST00000336873 MT2AP02795 61 aa3.39□□□□□ -1.87
HPS4-201ENST00000336873 KRTAP23-1A1A580 65 aa3.38□□□□□ -1.87
HPS4-201ENST00000336873 KMT2DO14686 5537 aa3.37□□□□□ -1.87
HPS4-201ENST00000336873 KRTAP19-1Q8IUB9 90 aa3.37□□□□□ -1.87
HPS4-201ENST00000336873 KRTAP10-12P60413 245 aa3.34□□□□□ -1.87
HPS4-201ENST00000336873 LCE2CQ5TA81 110 aa3.34□□□□□ -1.88
HPS4-201ENST00000336873 DSTQ03001 7570 aaKnown RBP3.32□□□□□ -1.88
HPS4-201ENST00000336873 KRTAP12-3P60328 96 aa3.32□□□□□ -1.88
HPS4-201ENST00000336873 SPRR2GQ9BYE4 73 aa3.3□□□□□ -1.88
HPS4-201ENST00000336873 SYNE1Q8NF91 8797 aaKnown RBP3.29□□□□□ -1.88
HPS4-201ENST00000336873 SPRR5A0A1B0GTR4 108 aa3.28□□□□□ -1.88
HPS4-201ENST00000336873 CRCT1Q9UGL9 99 aa3.26□□□□□ -1.89
HPS4-201ENST00000336873 KRTAP10-7P60409 375 aaPredicted RBP3.25□□□□□ -1.89
HPS4-201ENST00000336873 LCE2AQ5TA79 106 aaPredicted RBP3.24□□□□□ -1.89
HPS4-201ENST00000336873 KRTAP9-8Q9BYQ0 159 aa3.24□□□□□ -1.89
HPS4-201ENST00000336873 LCE2BO14633 110 aa3.21□□□□□ -1.9
HPS4-201ENST00000336873 FCGBPQ9Y6R7 5405 aaPredicted RBP3.2□□□□□ -1.9
HPS4-201ENST00000336873 KRTAP4-8A0A0G2JLE6 195 aa3.2□□□□□ -1.9
HPS4-201ENST00000336873 KRTAP4-8Q9BYQ9 185 aa3.2□□□□□ -1.9
HPS4-201ENST00000336873 MT1BP07438 61 aa3.18□□□□□ -1.9
HPS4-201ENST00000336873 MT1XP80297 61 aa3.18□□□□□ -1.9
HPS4-201ENST00000336873 KRTAP10-5P60370 271 aa3.17□□□□□ -1.9
HPS4-201ENST00000336873 KRTAP19-5Q3LI72 72 aa3.15□□□□□ -1.91
HPS4-201ENST00000336873 KRTAP19-8Q3LI54 63 aa3.12□□□□□ -1.91
HPS4-201ENST00000336873 KRTAP8-1Q8IUC2 63 aa3.11□□□□□ -1.91
HPS4-201ENST00000336873 KRTAP4-7Q9BYR0 210 aa3.09□□□□□ -1.91
HPS4-201ENST00000336873 KRTAP9-3Q9BYQ3 159 aa3.09□□□□□ -1.92
HPS4-201ENST00000336873 MUC12Q9UKN1 5478 aa3.01□□□□□ -1.93
HPS4-201ENST00000336873 SYNE2Q8WXH0 6885 aaKnown RBP3□□□□□ -1.93
HPS4-201ENST00000336873 LCE3CQ5T5A8 94 aa2.99□□□□□ -1.93
HPS4-201ENST00000336873 KRTAP9-6A8MVA2 160 aa2.92□□□□□ -1.94
HPS4-201ENST00000336873 SSPOA2VEC9 5147 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms