RNA–Protein interactions for RNA: ENST00000329397.5

PTP4A3-201, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTP4A3, Length 2,785 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-201ENST00000329397 A0A1B0GU33 70 aa9.18□□□□□ -0.94
PTP4A3-201ENST00000329397 HSPG2P98160 4391 aa9.17□□□□□ -0.94
PTP4A3-201ENST00000329397 CRIPTQ9P021 101 aa9.14□□□□□ -0.95
PTP4A3-201ENST00000329397 H1FX-AS1Q4G0G2 97 aa9.13□□□□□ -0.95
PTP4A3-201ENST00000329397 FAT3Q8TDW7 4589 aa9.12□□□□□ -0.95
PTP4A3-201ENST00000329397 LUZP6Q538Z0 58 aa9.09□□□□□ -0.95
PTP4A3-201ENST00000329397 COX6B2Q6YFQ2 88 aa9.09□□□□□ -0.95
PTP4A3-201ENST00000329397 TNXBP22105 4242 aa9.09□□□□□ -0.95
PTP4A3-201ENST00000329397 SPINT4Q6UDR6 99 aa9.06□□□□□ -0.96
PTP4A3-201ENST00000329397 RYR3Q15413 4870 aa9.06□□□□□ -0.96
PTP4A3-201ENST00000329397 KRTAP10-8P60410 259 aa8.98□□□□□ -0.97
PTP4A3-201ENST00000329397 KRTAP15-1Q3LI76 137 aa8.94□□□□□ -0.98
PTP4A3-201ENST00000329397 KRTAP3-3Q9BYR6 98 aa8.94□□□□□ -0.98
PTP4A3-201ENST00000329397 SEC61BP60468 96 aaKnown RBP8.93□□□□□ -0.98
PTP4A3-201ENST00000329397 KRTAP17-1Q9BYP8 105 aa8.93□□□□□ -0.98
PTP4A3-201ENST00000329397 LPAP08519 4548 aa8.92□□□□□ -0.98
PTP4A3-201ENST00000329397 A0A0D9SG42 100 aa8.92□□□□□ -0.98
PTP4A3-201ENST00000329397 KRTAP13-4Q3LI77 160 aa8.91□□□□□ -0.98
PTP4A3-201ENST00000329397 Q5VSD8 79 aa8.9□□□□□ -0.98
PTP4A3-201ENST00000329397 KIAA1109Q2LD37 5005 aa8.9□□□□□ -0.99
PTP4A3-201ENST00000329397 KRTAP10-6P60371 365 aaPredicted RBP8.9□□□□□ -0.99
PTP4A3-201ENST00000329397 XP32Q5T750 250 aa8.88□□□□□ -0.99
PTP4A3-201ENST00000329397 RPL37P61927 97 aaKnown RBP8.87□□□□□ -0.99
PTP4A3-201ENST00000329397 K7ERS5 55 aa8.84□□□□□ -0.99
PTP4A3-201ENST00000329397 RYR1P21817 5038 aa8.83□□□□□ -1
PTP4A3-201ENST00000329397 KRTAP3-2Q9BYR7 98 aa8.81□□□□□ -1
PTP4A3-201ENST00000329397 S4R3F8 94 aa8.8□□□□□ -1
PTP4A3-201ENST00000329397 LRP2P98164 4655 aa8.78□□□□□ -1
PTP4A3-201ENST00000329397 EPPK1P58107 5090 aaKnown RBP8.75□□□□□ -1.01
PTP4A3-201ENST00000329397 J3QL48 77 aa8.71□□□□□ -1.02
PTP4A3-201ENST00000329397 TPRXLQ17RH7 258 aa8.66□□□□□ -1.02
PTP4A3-201ENST00000329397 MT1HL1P0DM35 61 aa8.65□□□□□ -1.02
PTP4A3-201ENST00000329397 C10orf95Q9H7T3 257 aa8.63□□□□□ -1.03
PTP4A3-201ENST00000329397 KRTAP12-2P59991 146 aa8.61□□□□□ -1.03
PTP4A3-201ENST00000329397 ABCA13Q86UQ4 5058 aa8.59□□□□□ -1.03
PTP4A3-201ENST00000329397 KRTAP12-1P59990 96 aa8.48□□□□□ -1.05
PTP4A3-201ENST00000329397 KRTAP4-5Q9BYR2 181 aa8.48□□□□□ -1.05
PTP4A3-201ENST00000329397 M0QZ58 72 aa8.3□□□□□ -1.08
PTP4A3-201ENST00000329397 MUC17Q685J3 4493 aa8.24□□□□□ -1.09
PTP4A3-201ENST00000329397 LORP23490 312 aaPredicted RBP8.23□□□□□ -1.09
PTP4A3-201ENST00000329397 R4GN34 69 aa8.22□□□□□ -1.09
PTP4A3-201ENST00000329397 HERC2O95714 4834 aa8.2□□□□□ -1.1
PTP4A3-201ENST00000329397 MUC2Q02817 5179 aa8.19□□□□□ -1.1
PTP4A3-201ENST00000329397 KRTAP4-1Q9BYQ7 146 aa8.19□□□□□ -1.1
PTP4A3-201ENST00000329397 CAMK2N1Q7Z7J9 78 aa8.06□□□□□ -1.12
PTP4A3-201ENST00000329397 HERC1Q15751 4861 aa7.96□□□□□ -1.14
PTP4A3-201ENST00000329397 KRTAP19-2Q3LHN2 52 aa7.93□□□□□ -1.14
PTP4A3-201ENST00000329397 PLAC4Q8WY50 150 aa7.9□□□□□ -1.14
PTP4A3-201ENST00000329397 BIRC6Q9NR09 4857 aa7.84□□□□□ -1.15
PTP4A3-201ENST00000329397 PCLOQ9Y6V0 5065 aa7.82□□□□□ -1.16
PTP4A3-201ENST00000329397 FLGP20930 4061 aaPredicted RBP7.78□□□□□ -1.16
PTP4A3-201ENST00000329397 FAT4Q6V0I7 4981 aa7.78□□□□□ -1.16
PTP4A3-201ENST00000329397 PRO2289Q9P1D8 64 aa7.72□□□□□ -1.17
PTP4A3-201ENST00000329397 HMCN2Q8NDA2 5059 aa7.67□□□□□ -1.18
PTP4A3-201ENST00000329397 RNF213Q63HN8 5207 aa7.61□□□□□ -1.19
PTP4A3-201ENST00000329397 PP632Q6XCG6 107 aa7.52□□□□□ -1.21
PTP4A3-201ENST00000329397 UBR4Q5T4S7 5183 aa7.5□□□□□ -1.21
PTP4A3-201ENST00000329397 TNP1P09430 55 aa7.46□□□□□ -1.21
PTP4A3-201ENST00000329397 LCE2CQ5TA81 110 aa7.44□□□□□ -1.22
PTP4A3-201ENST00000329397 M0R2T5 61 aa7.37□□□□□ -1.23
PTP4A3-201ENST00000329397 KRTAP19-1Q8IUB9 90 aa7.34□□□□□ -1.23
PTP4A3-201ENST00000329397 SPRR2GQ9BYE4 73 aa7.28□□□□□ -1.24
PTP4A3-201ENST00000329397 MT1HP80294 61 aa7.24□□□□□ -1.25
PTP4A3-201ENST00000329397 INE1O15225 51 aa7.21□□□□□ -1.25
PTP4A3-201ENST00000329397 MT1FP04733 61 aa7.2□□□□□ -1.26
PTP4A3-201ENST00000329397 KRTAP10-10P60014 251 aa7.19□□□□□ -1.26
PTP4A3-201ENST00000329397 LCE3AQ5TA76 89 aa7.17□□□□□ -1.26
PTP4A3-201ENST00000329397 MT2AP02795 61 aa7.16□□□□□ -1.26
PTP4A3-201ENST00000329397 KRTAP23-1A1A580 65 aa7.15□□□□□ -1.26
PTP4A3-201ENST00000329397 SPRR5A0A1B0GTR4 108 aa7.1□□□□□ -1.27
PTP4A3-201ENST00000329397 KRTAP9-8Q9BYQ0 159 aa7.08□□□□□ -1.28
PTP4A3-201ENST00000329397 MT1BP07438 61 aa6.94□□□□□ -1.3
PTP4A3-201ENST00000329397 KRTAP10-5P60370 271 aa6.93□□□□□ -1.3
PTP4A3-201ENST00000329397 MT1XP80297 61 aa6.92□□□□□ -1.3
PTP4A3-201ENST00000329397 KRTAP19-8Q3LI54 63 aa6.91□□□□□ -1.3
PTP4A3-201ENST00000329397 KRTAP8-1Q8IUC2 63 aa6.85□□□□□ -1.31
PTP4A3-201ENST00000329397 KRTAP10-7P60409 375 aaPredicted RBP6.81□□□□□ -1.32
PTP4A3-201ENST00000329397 USH2AO75445 5202 aa6.81□□□□□ -1.32
PTP4A3-201ENST00000329397 KRTAP10-12P60413 245 aa6.8□□□□□ -1.32
PTP4A3-201ENST00000329397 KRTAP12-3P60328 96 aa6.77□□□□□ -1.33
PTP4A3-201ENST00000329397 KMT2DO14686 5537 aa6.75□□□□□ -1.33
PTP4A3-201ENST00000329397 KRTAP9-3Q9BYQ3 159 aa6.75□□□□□ -1.33
PTP4A3-201ENST00000329397 LCE2BO14633 110 aa6.55□□□□□ -1.36
PTP4A3-201ENST00000329397 KRTAP19-5Q3LI72 72 aa6.51□□□□□ -1.37
PTP4A3-201ENST00000329397 LCE2DQ5TA82 110 aaPredicted RBP6.48□□□□□ -1.37
PTP4A3-201ENST00000329397 KRTAP4-8A0A0G2JLE6 195 aa6.46□□□□□ -1.38
PTP4A3-201ENST00000329397 KRTAP4-8Q9BYQ9 185 aa6.46□□□□□ -1.38
PTP4A3-201ENST00000329397 FSIP2Q5CZC0 6907 aa6.4□□□□□ -1.38
PTP4A3-201ENST00000329397 LCE2AQ5TA79 106 aaPredicted RBP6.36□□□□□ -1.39
PTP4A3-201ENST00000329397 LCE3CQ5T5A8 94 aa6.35□□□□□ -1.39
PTP4A3-201ENST00000329397 KRTAP9-6A8MVA2 160 aa6.26□□□□□ -1.41
PTP4A3-201ENST00000329397 KRTAP4-7Q9BYR0 210 aa6.26□□□□□ -1.41
PTP4A3-201ENST00000329397 KRTAP19-7Q3SYF9 63 aa6.17□□□□□ -1.42
PTP4A3-201ENST00000329397 SSPOA2VEC9 5147 aa6.15□□□□□ -1.43
PTP4A3-201ENST00000329397 MT1LQ93083 61 aa5.97□□□□□ -1.45
PTP4A3-201ENST00000329397 MT1EP04732 61 aa5.95□□□□□ -1.46
PTP4A3-201ENST00000329397 KRTAP2-3P0C7H8 128 aa5.89□□□□□ -1.47
PTP4A3-201ENST00000329397 KRTAP2-4Q9BYR9 128 aa5.89□□□□□ -1.47
PTP4A3-201ENST00000329397 KRTAP2-1Q9BYU5 128 aa5.89□□□□□ -1.47
PTP4A3-201ENST00000329397 FCGBPQ9Y6R7 5405 aaPredicted RBP5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms